mRNA_H-paniculata_contig15672.3293.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15672.3293.1
Unique NamemRNA_H-paniculata_contig15672.3293.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15672.3293.1 vs. uniprot
Match: D7FRF5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRF5_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.740e-20
Identity = 41/55 (74.55%), Postives = 49/55 (89.09%), Query Frame = 1
Query:    1 VKNKLELGRYERAEDVAEDIRLIWSNCILYNSPDSEFGVLASTLRRKFEERYAKV 165
            V+ KLE GRYERAEDVA D+RLIWSNCILYNSP SEFG+LA+ L +KFEER+++V
Sbjct:   55 VRTKLEEGRYERAEDVARDVRLIWSNCILYNSPGSEFGLLAAGLAKKFEERFSRV 109          
BLAST of mRNA_H-paniculata_contig15672.3293.1 vs. uniprot
Match: A0A7S2PE54_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PE54_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 6.790e-13
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    1 VKNKLELGRYERAEDVAEDIRLIWSNCILYNSPDSEFGVLASTLRRKFEERYAKV 165
            VK KLE  +YE A + AEDIRLIWSNC+ YN   S+F +LA  L RKFE+R+ KV
Sbjct:   60 VKRKLESTQYETANECAEDIRLIWSNCMTYNQEGSDFYLLAQALSRKFEDRFRKV 114          
BLAST of mRNA_H-paniculata_contig15672.3293.1 vs. uniprot
Match: A0A7R9VVT0_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VVT0_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 5.790e-12
Identity = 27/55 (49.09%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    1 VKNKLELGRYERAEDVAEDIRLIWSNCILYNSPDSEFGVLASTLRRKFEERYAKV 165
            VK K+E G+Y    D AED+RLIW NC+ YN+  S+F +LA  + +KFE+++AK+
Sbjct:   54 VKRKIETGKYGAIHDAAEDVRLIWKNCMQYNADGSDFFILAQNMSKKFEDKFAKL 108          
BLAST of mRNA_H-paniculata_contig15672.3293.1 vs. uniprot
Match: A0A448ZMK4_9STRA (Bromo domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZMK4_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 6.830e-12
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    1 VKNKLELGRYERAEDVAEDIRLIWSNCILYNSPDSEFGVLASTLRRKFEERYAKV 165
            +K +LE G Y  A  VAEDIRL+W NC+ YN+  S+F +LA +  R+FE+RY K+
Sbjct:   57 IKRRLERGHYSTAHQVAEDIRLVWRNCMTYNADGSDFWLLAKSYARRFEDRYRKI 111          
BLAST of mRNA_H-paniculata_contig15672.3293.1 vs. uniprot
Match: A0A1E7EX32_9STRA (Bromodomain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EX32_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 8.500e-12
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    1 VKNKLELGRYERAEDVAEDIRLIWSNCILYNSPDSEFGVLASTLRRKFEERYAKV 165
            +K ++E G Y  A  VAED+RL+W NC+ YN   S+F +LA +  R+FE+RY KV
Sbjct:   15 IKRRIERGAYLNAHLVAEDVRLVWKNCMTYNLEGSDFWLLAKSYARRFEDRYRKV 69          
BLAST of mRNA_H-paniculata_contig15672.3293.1 vs. uniprot
Match: A0A7S2MY29_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MY29_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.090e-11
Identity = 27/55 (49.09%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    1 VKNKLELGRYERAEDVAEDIRLIWSNCILYNSPDSEFGVLASTLRRKFEERYAKV 165
            VK K+E G+Y    D AED+RLIW NC+ YN+  S+F +LA  + RKFE+++ K+
Sbjct:   52 VKRKIESGKYGTIHDAAEDVRLIWKNCMQYNADGSDFYILAKNMSRKFEDKFTKL 106          
BLAST of mRNA_H-paniculata_contig15672.3293.1 vs. uniprot
Match: B8BSQ7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BSQ7_THAPS)

HSP 1 Score: 65.1 bits (157), Expect = 2.110e-11
Identity = 27/55 (49.09%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    1 VKNKLELGRYERAEDVAEDIRLIWSNCILYNSPDSEFGVLASTLRRKFEERYAKV 165
            VK KL   +Y+   D A+D+RLIW NC+ YN+  S+F +LA T+ +KFEE++AK+
Sbjct:   51 VKKKLNESKYKSIHDAADDVRLIWKNCMTYNADGSDFYLLAQTMAKKFEEKFAKL 105          
BLAST of mRNA_H-paniculata_contig15672.3293.1 vs. uniprot
Match: A0A1E7FVJ2_9STRA (Bromodomain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVJ2_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.990e-11
Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    1 VKNKLELGRYERAEDVAEDIRLIWSNCILYNSPDSEFGVLASTLRRKFEERYAKV 165
            VK  +   +Y+   D A+DIRL+W+NC+ YN   S+F +LA  L +KFEE+Y+K+
Sbjct:   29 VKRNISARKYKSIPDAADDIRLVWANCMTYNQDGSDFFLLAKNLGKKFEEKYSKI 83          
BLAST of mRNA_H-paniculata_contig15672.3293.1 vs. uniprot
Match: A0A448YXV5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YXV5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 6.040e-10
Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    1 VKNKLELGRYERAEDVAEDIRLIWSNCILYNSPDSEFGVLASTLRRKFEERYAKV 165
            VK  +   +Y+   + AEDIRL+W+NC+ YN   S+F +LA  L ++FEE+YAK+
Sbjct:   55 VKRNINSRKYKSIPEAAEDIRLVWTNCMTYNQDGSDFYILAKNLSKRFEEKYAKL 109          
BLAST of mRNA_H-paniculata_contig15672.3293.1 vs. uniprot
Match: A0A7S2WIF9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WIF9_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 6.260e-10
Identity = 23/55 (41.82%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    1 VKNKLELGRYERAEDVAEDIRLIWSNCILYNSPDSEFGVLASTLRRKFEERYAKV 165
            VK  +E  +Y+   + AED+RLIW NC+ YN+  S+F +LA  + +KFE++++K+
Sbjct:   54 VKRNIETSKYKTIHEAAEDVRLIWKNCMTYNADGSDFYILAQNMSKKFEDKFSKL 108          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15672.3293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRF5_ECTSI1.740e-2074.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2PE54_9STRA6.790e-1360.00Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7R9VVT0_9STRA5.790e-1249.09Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A448ZMK4_9STRA6.830e-1250.91Bromo domain-containing protein n=1 Tax=Pseudo-nit... [more]
A0A1E7EX32_9STRA8.500e-1249.09Bromodomain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S2MY29_9STRA1.090e-1149.09Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
B8BSQ7_THAPS2.110e-1149.09Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A1E7FVJ2_9STRA3.990e-1145.45Bromodomain-containing protein (Fragment) n=1 Tax=... [more]
A0A448YXV5_9STRA6.040e-1045.45Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2WIF9_9STRA6.260e-1041.82Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15672contigH-paniculata_contig15672:5736..5900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue2e-16
Seed eggNOG ortholog2880.D7FRF5
KEGG koko:K11724
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.acetylation-dependent protein binding
EggNOG OGsCOG5076@1,KOG1474@2759
Ec32 ortholog descriptionBromodomain and extraterminal protein
Ec32 orthologEc-08_000760.1
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001,ko03036
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929251.2231882-CDS-H-paniculata_contig15672:5735..59001622929251.2231882-CDS-H-paniculata_contig15672:5735..5900Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15672 5736..5900 +
1691480787.7175534-CDS-H-paniculata_contig15672:5735..59001691480787.7175534-CDS-H-paniculata_contig15672:5735..5900Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15672 5736..5900 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15672.3293.1prot_H-paniculata_contig15672.3293.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15672 5736..5900 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15672.3293.1

>prot_H-paniculata_contig15672.3293.1 ID=prot_H-paniculata_contig15672.3293.1|Name=mRNA_H-paniculata_contig15672.3293.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
VKNKLELGRYERAEDVAEDIRLIWSNCILYNSPDSEFGVLASTLRRKFEE
RYAKV
back to top

mRNA from alignment at H-paniculata_contig15672:5736..5900+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15672.3293.1 ID=mRNA_H-paniculata_contig15672.3293.1|Name=mRNA_H-paniculata_contig15672.3293.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at H-paniculata_contig15672:5736..5900+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAAAAAACAAACTGGAGCTGGGTAGGTACGAGCGAGCAGAAGACGTCGC GGAGGATATCCGACTAATATGGAGCAACTGCATTCTCTACAACTCGCCCG ACTCCGAGTTCGGCGTTTTGGCGTCCACCCTGCGCCGAAAGTTTGAAGAG CGATACGCCAAGGTA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig15672:5736..5900+

>mRNA_H-paniculata_contig15672.3293.1 ID=mRNA_H-paniculata_contig15672.3293.1|Name=mRNA_H-paniculata_contig15672.3293.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig15672:5736..5900+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAAAAAACAAACTGGAGCTGGGTAGGTACGAGCGAGCAGAAGACGTCGC
GGAGGATATCCGACTAATATGGAGCAACTGCATTCTCTACAACTCGCCCG
ACTCCGAGTTCGGCGTTTTGGCGTCCACCCTGCGCCGAAAGTTTGAAGAG
CGATACGCCAAGGTAGTAAAAAACAAACTGGAGCTGGGTAGGTACGAGCG
AGCAGAAGACGTCGCGGAGGATATCCGACTAATATGGAGCAACTGCATTC
TCTACAACTCGCCCGACTCCGAGTTCGGCGTTTTGGCGTCCACCCTGCGC
CGAAAGTTTGAAGAGCGATACGCCAAGGTA
back to top