mRNA_H-paniculata_contig1567.3291.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1567.3291.1 vs. uniprot
Match: A0A6H5KGH1_9PHAE (SSD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGH1_9PHAE) HSP 1 Score: 104 bits (259), Expect = 2.140e-24 Identity = 46/72 (63.89%), Postives = 60/72 (83.33%), Query Frame = 1
Query: 1 CLQKFSHAIETRMSGFFSKLGRGVGINPGRTLILALIGCLIGMSGFSVIENESRGDKLWLPTGTRAQDDWVS 216
CLQK SHAIE+RM FFS+LG V I+PG+T++LAL+G LIG SGF+ +E ESRGDKLW+P+GTRA +D+ +
Sbjct: 15 CLQKMSHAIESRMHAFFSRLGELVAIHPGKTVLLALVGVLIGASGFTTLEQESRGDKLWVPSGTRASEDYAT 86
BLAST of mRNA_H-paniculata_contig1567.3291.1 vs. uniprot
Match: UPI00106B5848 (patched domain-containing protein 3-like n=2 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B5848) HSP 1 Score: 64.3 bits (155), Expect = 2.560e-10 Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 1
Query: 4 LQKFSHAIETRMSGFFSKLGRGVGINPGRTLILALIGCLIGMSGFSVIENESRGDKLWLPTGTRAQDD--WV 213
LQK S I + F +LGR VG +P T++++L+ C M+GF E ESRG+KLW+P ++AQDD WV
Sbjct: 18 LQKISRIITGTLENIFYRLGRTVGGSPWITILVSLLLCGACMAGFLRFEQESRGEKLWVPQDSKAQDDKEWV 89
BLAST of mRNA_H-paniculata_contig1567.3291.1 vs. uniprot
Match: UPI001F043BCF (patched domain-containing protein 3-like n=3 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F043BCF) HSP 1 Score: 57.0 bits (136), Expect = 9.700e-8 Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 1
Query: 4 LQKFSHAIETRMSGFFSKLGRGVGINPGRTLILALIGCLIGMSGFSVIENESRGDKLWLPTGTRAQDD--WV 213
LQKFS+ I + F ++G+ VG +P TL + LI C ++G E E RG+KLW+P ++AQDD WV
Sbjct: 16 LQKFSNVITGFLEITFYRIGKTVGASPWVTLGITLIVCGACLAGLLRFEQEFRGEKLWVPQDSQAQDDKKWV 87
BLAST of mRNA_H-paniculata_contig1567.3291.1 vs. uniprot
Match: A0A7S0GZW5_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GZW5_MICPS) HSP 1 Score: 55.8 bits (133), Expect = 2.480e-7 Identity = 28/71 (39.44%), Postives = 45/71 (63.38%), Query Frame = 1
Query: 4 LQKFSHAIETRMSGFFSKLGRGVGINPGRTLILALIGCLIGMSGFSV--IENESRGDKLWLPTGTRAQDDW 210
L++F+ I ++GFF K+G + +P + LI + L+ SG + + NE+RGDKLW+P T+AQDD+
Sbjct: 65 LERFADRINGAITGFFFKVGFSIAHSPRKWLIGTFLVFLVFASGVAYPGLTNENRGDKLWVPADTQAQDDF 135
BLAST of mRNA_H-paniculata_contig1567.3291.1 vs. uniprot
Match: B7FU33_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FU33_PHATC) HSP 1 Score: 54.7 bits (130), Expect = 5.930e-7 Identity = 25/69 (36.23%), Postives = 42/69 (60.87%), Query Frame = 1
Query: 1 CLQKFSHAIETRMSGFFSKLGRGVGINPGRTLILALIGCLIGMSGFSVIENESRGDKLWLPTGTRAQDD 207
C + + I+ + GFF LG VG P +T+ +A++ ++ +GF E ESRG++LW+P TRA+ +
Sbjct: 29 CTENCGNKIDGGIQGFFYSLGAFVGSKPRQTIGMAILFTVVCGAGFVRFETESRGEELWVPQDTRAEQE 97
BLAST of mRNA_H-paniculata_contig1567.3291.1 vs. uniprot
Match: A0A813CPV7_9DINO (Ptchd3 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CPV7_9DINO) HSP 1 Score: 51.2 bits (121), Expect = 1.070e-5 Identity = 26/66 (39.39%), Postives = 43/66 (65.15%), Query Frame = 1
Query: 25 IETRMSGFFSKLGRGVGINPGRTLILALIGCLIGMSGFSVIENESRGDKLWLPTGTRA--QDDWVS 216
IE + FF K+GR VG +P ++L+ +++ + GFS++ NE+R +K W+PTG A +D+VS
Sbjct: 351 IERVLESFFEKVGRVVGTHPIKSLVGSVLFVVACGGGFSMLTNETRPEKQWVPTGAIALEHNDYVS 416
BLAST of mRNA_H-paniculata_contig1567.3291.1 vs. uniprot
Match: A0A812L909_9DINO (Ptchd3 protein n=5 Tax=Symbiodinium TaxID=2949 RepID=A0A812L909_9DINO) HSP 1 Score: 49.7 bits (117), Expect = 3.710e-5 Identity = 23/58 (39.66%), Postives = 38/58 (65.52%), Query Frame = 1
Query: 25 IETRMSGFFSKLGRGVGINPGRTLILALIGCLIGMSGFSVIENESRGDKLWLPTGTRA 198
IE + FF K+GR VG +P ++L+ +++ + GFS++ NE+R +K W+PTG A
Sbjct: 38 IERVLESFFEKVGRVVGTHPIKSLVGSVLFVVACGGGFSMLTNETRPEKQWVPTGAIA 95
BLAST of mRNA_H-paniculata_contig1567.3291.1 vs. uniprot
Match: A0A096P8T2_OSTTA (Sterol-sensing domain n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A096P8T2_OSTTA) HSP 1 Score: 49.3 bits (116), Expect = 5.080e-5 Identity = 28/75 (37.33%), Postives = 42/75 (56.00%), Query Frame = 1
Query: 1 CLQKFSHAIETRMSGFFSK----LGRGVGINPGRTLILALIGCLI--GMSGFSVIENESRGDKLWLPTGTRAQDD 207
C K ++ + +GFF K LGR P + ++ C+I G G+ ++NE+RGD+LW+PT T AQDD
Sbjct: 48 CGDKLANGV----NGFFGKKFYALGRASASRPWTMIACTVVLCVIFSGGVGYPGLKNENRGDRLWVPTDTPAQDD 118 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1567.3291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1567.3291.1 >prot_H-paniculata_contig1567.3291.1 ID=prot_H-paniculata_contig1567.3291.1|Name=mRNA_H-paniculata_contig1567.3291.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp CLQKFSHAIETRMSGFFSKLGRGVGINPGRTLILALIGCLIGMSGFSVIEback to top mRNA from alignment at H-paniculata_contig1567:3414..3632+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1567.3291.1 ID=mRNA_H-paniculata_contig1567.3291.1|Name=mRNA_H-paniculata_contig1567.3291.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at H-paniculata_contig1567:3414..3632+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1567:3414..3632+ >mRNA_H-paniculata_contig1567.3291.1 ID=mRNA_H-paniculata_contig1567.3291.1|Name=mRNA_H-paniculata_contig1567.3291.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig1567:3414..3632+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |