mRNA_H-paniculata_contig1567.3291.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1567.3291.1
Unique NamemRNA_H-paniculata_contig1567.3291.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1567.3291.1 vs. uniprot
Match: A0A6H5KGH1_9PHAE (SSD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGH1_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 2.140e-24
Identity = 46/72 (63.89%), Postives = 60/72 (83.33%), Query Frame = 1
Query:    1 CLQKFSHAIETRMSGFFSKLGRGVGINPGRTLILALIGCLIGMSGFSVIENESRGDKLWLPTGTRAQDDWVS 216
            CLQK SHAIE+RM  FFS+LG  V I+PG+T++LAL+G LIG SGF+ +E ESRGDKLW+P+GTRA +D+ +
Sbjct:   15 CLQKMSHAIESRMHAFFSRLGELVAIHPGKTVLLALVGVLIGASGFTTLEQESRGDKLWVPSGTRASEDYAT 86          
BLAST of mRNA_H-paniculata_contig1567.3291.1 vs. uniprot
Match: UPI00106B5848 (patched domain-containing protein 3-like n=2 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B5848)

HSP 1 Score: 64.3 bits (155), Expect = 2.560e-10
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    4 LQKFSHAIETRMSGFFSKLGRGVGINPGRTLILALIGCLIGMSGFSVIENESRGDKLWLPTGTRAQDD--WV 213
            LQK S  I   +   F +LGR VG +P  T++++L+ C   M+GF   E ESRG+KLW+P  ++AQDD  WV
Sbjct:   18 LQKISRIITGTLENIFYRLGRTVGGSPWITILVSLLLCGACMAGFLRFEQESRGEKLWVPQDSKAQDDKEWV 89          
BLAST of mRNA_H-paniculata_contig1567.3291.1 vs. uniprot
Match: UPI001F043BCF (patched domain-containing protein 3-like n=3 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F043BCF)

HSP 1 Score: 57.0 bits (136), Expect = 9.700e-8
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 1
Query:    4 LQKFSHAIETRMSGFFSKLGRGVGINPGRTLILALIGCLIGMSGFSVIENESRGDKLWLPTGTRAQDD--WV 213
            LQKFS+ I   +   F ++G+ VG +P  TL + LI C   ++G    E E RG+KLW+P  ++AQDD  WV
Sbjct:   16 LQKFSNVITGFLEITFYRIGKTVGASPWVTLGITLIVCGACLAGLLRFEQEFRGEKLWVPQDSQAQDDKKWV 87          
BLAST of mRNA_H-paniculata_contig1567.3291.1 vs. uniprot
Match: A0A7S0GZW5_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GZW5_MICPS)

HSP 1 Score: 55.8 bits (133), Expect = 2.480e-7
Identity = 28/71 (39.44%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    4 LQKFSHAIETRMSGFFSKLGRGVGINPGRTLILALIGCLIGMSGFSV--IENESRGDKLWLPTGTRAQDDW 210
            L++F+  I   ++GFF K+G  +  +P + LI   +  L+  SG +   + NE+RGDKLW+P  T+AQDD+
Sbjct:   65 LERFADRINGAITGFFFKVGFSIAHSPRKWLIGTFLVFLVFASGVAYPGLTNENRGDKLWVPADTQAQDDF 135          
BLAST of mRNA_H-paniculata_contig1567.3291.1 vs. uniprot
Match: B7FU33_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FU33_PHATC)

HSP 1 Score: 54.7 bits (130), Expect = 5.930e-7
Identity = 25/69 (36.23%), Postives = 42/69 (60.87%), Query Frame = 1
Query:    1 CLQKFSHAIETRMSGFFSKLGRGVGINPGRTLILALIGCLIGMSGFSVIENESRGDKLWLPTGTRAQDD 207
            C +   + I+  + GFF  LG  VG  P +T+ +A++  ++  +GF   E ESRG++LW+P  TRA+ +
Sbjct:   29 CTENCGNKIDGGIQGFFYSLGAFVGSKPRQTIGMAILFTVVCGAGFVRFETESRGEELWVPQDTRAEQE 97          
BLAST of mRNA_H-paniculata_contig1567.3291.1 vs. uniprot
Match: A0A813CPV7_9DINO (Ptchd3 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CPV7_9DINO)

HSP 1 Score: 51.2 bits (121), Expect = 1.070e-5
Identity = 26/66 (39.39%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   25 IETRMSGFFSKLGRGVGINPGRTLILALIGCLIGMSGFSVIENESRGDKLWLPTGTRA--QDDWVS 216
            IE  +  FF K+GR VG +P ++L+ +++  +    GFS++ NE+R +K W+PTG  A   +D+VS
Sbjct:  351 IERVLESFFEKVGRVVGTHPIKSLVGSVLFVVACGGGFSMLTNETRPEKQWVPTGAIALEHNDYVS 416          
BLAST of mRNA_H-paniculata_contig1567.3291.1 vs. uniprot
Match: A0A812L909_9DINO (Ptchd3 protein n=5 Tax=Symbiodinium TaxID=2949 RepID=A0A812L909_9DINO)

HSP 1 Score: 49.7 bits (117), Expect = 3.710e-5
Identity = 23/58 (39.66%), Postives = 38/58 (65.52%), Query Frame = 1
Query:   25 IETRMSGFFSKLGRGVGINPGRTLILALIGCLIGMSGFSVIENESRGDKLWLPTGTRA 198
            IE  +  FF K+GR VG +P ++L+ +++  +    GFS++ NE+R +K W+PTG  A
Sbjct:   38 IERVLESFFEKVGRVVGTHPIKSLVGSVLFVVACGGGFSMLTNETRPEKQWVPTGAIA 95          
BLAST of mRNA_H-paniculata_contig1567.3291.1 vs. uniprot
Match: A0A096P8T2_OSTTA (Sterol-sensing domain n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A096P8T2_OSTTA)

HSP 1 Score: 49.3 bits (116), Expect = 5.080e-5
Identity = 28/75 (37.33%), Postives = 42/75 (56.00%), Query Frame = 1
Query:    1 CLQKFSHAIETRMSGFFSK----LGRGVGINPGRTLILALIGCLI--GMSGFSVIENESRGDKLWLPTGTRAQDD 207
            C  K ++ +    +GFF K    LGR     P   +   ++ C+I  G  G+  ++NE+RGD+LW+PT T AQDD
Sbjct:   48 CGDKLANGV----NGFFGKKFYALGRASASRPWTMIACTVVLCVIFSGGVGYPGLKNENRGDRLWVPTDTPAQDD 118          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1567.3291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KGH1_9PHAE2.140e-2463.89SSD domain-containing protein n=2 Tax=Ectocarpus T... [more]
UPI00106B58482.560e-1045.83patched domain-containing protein 3-like n=2 Tax=D... [more]
UPI001F043BCF9.700e-843.06patched domain-containing protein 3-like n=3 Tax=X... [more]
A0A7S0GZW5_MICPS2.480e-739.44Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
B7FU33_PHATC5.930e-736.23Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A813CPV7_9DINO1.070e-539.39Ptchd3 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A812L909_9DINO3.710e-539.66Ptchd3 protein n=5 Tax=Symbiodinium TaxID=2949 Rep... [more]
A0A096P8T2_OSTTA5.080e-537.33Sterol-sensing domain n=2 Tax=Ostreococcus tauri T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1567contigH-paniculata_contig1567:3414..3632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue6.4e-18
Seed eggNOG ortholog2880.D7FVR4
Preferred namePTCHD3
KEGG koko:K12385
KEGG TC2.A.6.6
KEGG Pathwayko04142,ko04979,map04142,map04979
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.cellular response to sterol depletion
EggNOG OGsKOG1933@1,KOG1933@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929251.0396733-CDS-H-paniculata_contig1567:3413..36321622929251.0396733-CDS-H-paniculata_contig1567:3413..3632Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1567 3414..3632 +
1691480787.6572106-CDS-H-paniculata_contig1567:3413..36321691480787.6572106-CDS-H-paniculata_contig1567:3413..3632Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1567 3414..3632 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1567.3291.1prot_H-paniculata_contig1567.3291.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1567 3414..3632 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1567.3291.1

>prot_H-paniculata_contig1567.3291.1 ID=prot_H-paniculata_contig1567.3291.1|Name=mRNA_H-paniculata_contig1567.3291.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
CLQKFSHAIETRMSGFFSKLGRGVGINPGRTLILALIGCLIGMSGFSVIE
NESRGDKLWLPTGTRAQDDWVSS
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mRNA from alignment at H-paniculata_contig1567:3414..3632+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1567.3291.1 ID=mRNA_H-paniculata_contig1567.3291.1|Name=mRNA_H-paniculata_contig1567.3291.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at H-paniculata_contig1567:3414..3632+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTTGCAAAAGTTCTCGCACGCGATCGAGACGAGAATGTCAGGCTTTTT CTCGAAGCTCGGACGAGGGGTTGGCATCAACCCGGGTCGGACGCTGATTC TGGCGTTAATCGGCTGCTTGATCGGAATGTCCGGGTTTTCGGTGATCGAG AACGAGTCTAGAGGAGATAAGCTCTGGCTGCCCACGGGGACTCGTGCACA AGATGATTGGGTAAGTTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig1567:3414..3632+

>mRNA_H-paniculata_contig1567.3291.1 ID=mRNA_H-paniculata_contig1567.3291.1|Name=mRNA_H-paniculata_contig1567.3291.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig1567:3414..3632+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTTGCAAAAGTTCTCGCACGCGATCGAGACGAGAATGTCAGGCTTTTT
CTCGAAGCTCGGACGAGGGGTTGGCATCAACCCGGGTCGGACGCTGATTC
TGGCGTTAATCGGCTGCTTGATCGGAATGTCCGGGTTTTCGGTGATCGAG
AACGAGTCTAGAGGAGATAAGCTCTGGCTGCCCACGGGGACTCGTGCACA
AGATGATTGGGTAAGTTCGTGCTTGCAAAAGTTCTCGCACGCGATCGAGA
CGAGAATGTCAGGCTTTTTCTCGAAGCTCGGACGAGGGGTTGGCATCAAC
CCGGGTCGGACGCTGATTCTGGCGTTAATCGGCTGCTTGATCGGAATGTC
CGGGTTTTCGGTGATCGAGAACGAGTCTAGAGGAGATAAGCTCTGGCTGC
CCACGGGGACTCGTGCACAAGATGATTGGGTAAGTTCG
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