mRNA_H-paniculata_contig15646.3279.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig15646.3279.1 vs. uniprot
Match: W8BWJ0_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8BWJ0_CERCA) HSP 1 Score: 112 bits (279), Expect = 1.950e-22 Identity = 63/164 (38.41%), Postives = 95/164 (57.93%), Query Frame = 2
Query: 368 VRRLHKSMYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLFFSHDDREETNLLVAVYVGGLVIAGRRE-KVDKFKHKVSV-FRTKDLGSLSRVLGIEVRRDRPNGTITISQVSYIRGVLKINGFDECRGVPTP*VQ------QSSRRRSGNSTEYRGVVGSIMY 835
V +L K++YGLKQSGR WNNTLD+ L +G RS ++CL+ +++ + +AVYV L+I E ++ K ++S F D GSLS LG+E++RD G +++ Q +YIR +LK G CR V TP + N T+Y+ ++GS+MY
Sbjct: 960 VLKLKKAIYGLKQSGRAWNNTLDEVLQNMGFKRSKNEACLYVKQ--QQQGSSYIAVYVDDLIIISPSENEICAIKRQISSKFEMHDSGSLSYFLGLEIQRDGKQGYVSLCQKTYIRNLLKTYGMQNCRAVATPLDPGFLVCCKDDSCVKVNVTQYQSLIGSLMY 1121
BLAST of mRNA_H-paniculata_contig15646.3279.1 vs. uniprot
Match: W7T0T3_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0T3_9STRA) HSP 1 Score: 110 bits (276), Expect = 3.980e-22 Identity = 66/169 (39.05%), Postives = 94/169 (55.62%), Query Frame = 2
Query: 350 SRDAPFVRRLHKSMYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLFFSHDDREETNLLVAVYVGGLVIAGR-REKVDKFKHKVS-VFRTKDLGSLSRVLGIEVRRDRPNGTITISQVSYIRGVLKINGFDECRGVPTP*VQQSSRRRSGNST----EYRGVVGSIMYA 838
S V RL KS+YGLKQSGRNW+ +D + G G S+ D CL+ E L++ +YV L+I RE V+KFKH +S F KDL L +LG+ ++RDR + ISQ +YI +L G +C+ V TP ++ + + G EY +VGS++YA
Sbjct: 552 SNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVNKFKHAISREFSMKDLKELDWILGMAIKRDREKRVMEISQTAYIDMMLAKFGMADCKPVLTP-MEGTLTKMDGKDVKPDNEYMKLVGSLLYA 718
BLAST of mRNA_H-paniculata_contig15646.3279.1 vs. uniprot
Match: A0A146H3U8_MYCCL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H3U8_MYCCL) HSP 1 Score: 108 bits (271), Expect = 6.560e-22 Identity = 62/170 (36.47%), Postives = 96/170 (56.47%), Query Frame = 2
Query: 368 VRRLHKSMYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLFFSHDDREETNLLVAVYVGGLVI-AGRREKVDKFKHKV-SVFRTKDLGSLSRVLGIEVRRDRPNGTITISQVSYIRGVLKINGFDECRGVPTP*VQQSSRRRS-----------GNSTEYRGVVGSIMYA 838
V RL KS+YGL QSGR WN D + IGL ++ D+C+++ D E + V V+V L+I A +++ ++ K ++ ++F KDLG +++GIEV RDR GT+T+SQ YI +L GF + GV TP V ++ + EY+ ++G +MYA
Sbjct: 116 VWRLKKSLYGLHQSGREWNREFDQKVQTIGLTKTAADNCVYYRERDGER--VWVTVWVDDLIILATSKDEGERVKKELDTLFEMKDLGEPRKIIGIEVTRDRSAGTVTLSQRHYIESLLDRYGFSDLNGVSTPLVPDANTKMRQLPKDAPPTAPSARAEYQSMIGGLMYA 283
BLAST of mRNA_H-paniculata_contig15646.3279.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA) HSP 1 Score: 110 bits (274), Expect = 7.310e-22 Identity = 66/164 (40.24%), Postives = 92/164 (56.10%), Query Frame = 2
Query: 365 FVRRLHKSMYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLFFSHDDREETNLLVAVYVGGLVIAGR-REKVDKFKHKVS-VFRTKDLGSLSRVLGIEVRRDRPNGTITISQVSYIRGVLKINGFDECRGVPTP*VQQSSRRRSGNST----EYRGVVGSIMYA 838
V RL KS+YGLKQSGRNW+ +D + G G S+ D CL+ E L++ +YV L+I RE VDKFK +S F KDL L +LG+ ++R+R + ISQ +YI VL G +CR V TP ++ + + G EY +VGS++YA
Sbjct: 346 LVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVIVLYVDDLIITSNSREMVDKFKQAISREFSMKDLKELDWILGMAIKRNREKRVMEISQTAYIDMVLNKFGMADCRPVLTP-MEGTLTKMDGKDAKPDNEYMKLVGSLLYA 507
BLAST of mRNA_H-paniculata_contig15646.3279.1 vs. uniprot
Match: A0A4Q2D651_9AGAR (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Candolleomyces aberdarensis TaxID=2316362 RepID=A0A4Q2D651_9AGAR) HSP 1 Score: 110 bits (274), Expect = 8.720e-22 Identity = 67/172 (38.95%), Postives = 94/172 (54.65%), Query Frame = 2
Query: 374 RLHKSMYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLFFSHDDREETNLLVAVYVGGLVIAGR-REKVDKFKHKVSV-FRTKDLGSLSRVLGIEVRRDRPNGTITISQVSYIRGVLKINGFDECRGVPTP*VQQSSRRRS---------------GNSTEYRGVVGSIMYA 838
+L +S+YGLKQSGR WN TLD L+ +GL R ++CL+ +D E L+V YV L++A R ++K K +S F+ KDLG +LG+ + RDR NG I +SQ +YI VL+ G C PTP + S++ G Y+ VVGS+MYA
Sbjct: 1138 KLKRSLYGLKQSGRTWNKTLDQSLLSMGLVRLDAETCLYVYKEDGEVCFLVV--YVDDLLLAATSRPFMNKVKAMLSSRFKMKDLGEAKFILGMAIHRDRRNGEIRLSQRNYIANVLERTGMSHCSPAPTP-IPTSAKATEDDPVDNTILHSITIEGREVSYKSVVGSLMYA 1306
BLAST of mRNA_H-paniculata_contig15646.3279.1 vs. uniprot
Match: Q18L98_CITSI (Putative gag-pol polyprotein n=2 Tax=Citrus sinensis TaxID=2711 RepID=Q18L98_CITSI) HSP 1 Score: 109 bits (273), Expect = 1.110e-21 Identity = 64/168 (38.10%), Postives = 94/168 (55.95%), Query Frame = 2
Query: 365 FVRRLHKSMYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLFFSHDDREETNLLVAVYVGGLVIAGR-REKVDKFKHKVSV-FRTKDLGSLSRVLGIEVRRDRPNGTITISQVSYIRGVLKINGFDECRGVPTP*VQQ--------SSRRRSGNSTEYRGVVGSIMYA 838
+V LHKS+YGLKQS R W DDF+V G RS DSC++F D+ L+ +YV ++IA + + ++++ K+ + F KDLG+ R+LG+++ RDR GT+ +SQ YI+ VL+ +C+ V TP Q S N Y VGS+MYA
Sbjct: 956 YVCLLHKSLYGLKQSPRQWYRRFDDFMVSKGYRRSRYDSCVYFGGSDQGGVAYLL-LYVDDMLIASKYKSEIERLKNLLKAEFEMKDLGNAKRILGMDIIRDRSAGTLFLSQGKYIKKVLERFEMQDCKPVQTPLGPQFKLSAATTSEDESQMNEFPYAQAVGSLMYA 1122
BLAST of mRNA_H-paniculata_contig15646.3279.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA) HSP 1 Score: 108 bits (269), Expect = 2.460e-21 Identity = 65/164 (39.63%), Postives = 91/164 (55.49%), Query Frame = 2
Query: 365 FVRRLHKSMYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLFFSHDDREETNLLVAVYVGGLVIAGR-REKVDKFKHKVS-VFRTKDLGSLSRVLGIEVRRDRPNGTITISQVSYIRGVLKINGFDECRGVPTP*VQQSSRRRSGNST----EYRGVVGSIMYA 838
V RL KS+YGLKQSGRNW+ +D + G GL S D CL+ E L++ +YV L+I R DKFK +S F KDL L +LG+ ++R+R N T+ ISQ YI +L G +C+ V TP ++ + + G EY +VGS++YA
Sbjct: 337 LVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTP-MEGTLTKMDGKDVKPDNEYMKLVGSLLYA 498
BLAST of mRNA_H-paniculata_contig15646.3279.1 vs. uniprot
Match: Q9SZY0_ARATH (Putative retrotransposon n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SZY0_ARATH) HSP 1 Score: 108 bits (270), Expect = 2.580e-21 Identity = 65/171 (38.01%), Postives = 94/171 (54.97%), Query Frame = 2
Query: 377 LHKSMYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLFF-SHDDREETNLLVAVYVGGLVIAGR-REKVDKFKHKVSV-FRTKDLGSLSRVLGIEVRRDRPNGTITISQVSYIRGVLKINGFDECRGVPTP*-----------VQQSSRRRSGNSTEYRGVVGSIMYASTD 847
L+K+MYGLKQS R WN D +++ IG +RS + C + S +D + LL+ YV +++A R + + + K K+S F KDLG+ R+LG+E+ RDR GT+T+SQ Y+ VL+ D+C+ V TP Q S S Y VGSIMY+ D
Sbjct: 883 LNKTMYGLKQSPRRWNQKFDSYMLEIGFERSPRNKCAYIKSLEDGSKVYLLI--YVDDMLVAARDMQVISELKQKLSEKFEMKDLGAAKRILGMEISRDRVKGTLTLSQEDYLSKVLETYNVDQCKFVVTPLGAHLKMHAATEQQLLSDEEYMKSVPYSNAVGSIMYSMID 1051
BLAST of mRNA_H-paniculata_contig15646.3279.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA) HSP 1 Score: 106 bits (265), Expect = 2.950e-21 Identity = 65/169 (38.46%), Postives = 92/169 (54.44%), Query Frame = 2
Query: 350 SRDAPFVRRLHKSMYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLFFSHDDREETNLLVAVYVGGLVIAGR-REKVDKFKHKVS-VFRTKDLGSLSRVLGIEVRRDRPNGTITISQVSYIRGVLKINGFDECRGVPTP*VQQSSRRRSGNST----EYRGVVGSIMYA 838
S V RL KS+YGLKQSGRNW+ +D + G G S+ D CL+ E L++ +YV L+I RE V KFKH +S F KDL L +LG+ ++RDR + ISQ +YI +L +C+ V TP ++ + + G EY +VGS++YA
Sbjct: 112 SNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTP-MEGTLTKMDGKDVKPDNEYMKLVGSLLYA 278
BLAST of mRNA_H-paniculata_contig15646.3279.1 vs. uniprot
Match: A0A8D8HJI9_CULPI (Copia protein n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8HJI9_CULPI) HSP 1 Score: 107 bits (266), Expect = 3.210e-21 Identity = 64/170 (37.65%), Postives = 92/170 (54.12%), Query Frame = 2
Query: 347 FSRDAPFVRRLHKSMYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLFFSHDDREETNLLVAVYVGGLVIAGRREK-VDKFKHKVSV-FRTKDLGSLSRVLGIEVRRDRPNGTITISQVSYIRGVLKINGFDECRGVPTP*VQQSSRRRSGNSTE-----YRGVVGSIMY 835
F R V +L++S+YGLKQS RNWN DD++ +G RS D CL+ D T +L+ YV ++IAG K + K K+S F KD+ LG+ + RDR G++TI Q +Y GVLK G + C+ P P +Q + G+ E Y+ +VG +MY
Sbjct: 136 FERGKDLVCKLNRSIYGLKQSSRNWNRRFDDYVTKLGFKRSQHDLCLYHWKADGVVTYMLI--YVDDILIAGNDLKAIRALKGKLSTEFEMKDMEEAKIFLGLRIDRDRKAGSMTIDQKAYTLGVLKRFGMENCKSSPVP-MQPRLKLERGDPKELTEKPYKELVGCLMY 302 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15646.3279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig15646.3279.1 >prot_H-paniculata_contig15646.3279.1 ID=prot_H-paniculata_contig15646.3279.1|Name=mRNA_H-paniculata_contig15646.3279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp MYGLKQSGRNWNNTLDDFLVGIGLDRSTTDSCLFFSHDDREETNLLVAVYback to top mRNA from alignment at H-paniculata_contig15646:4347..5861- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig15646.3279.1 ID=mRNA_H-paniculata_contig15646.3279.1|Name=mRNA_H-paniculata_contig15646.3279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1515bp|location=Sequence derived from alignment at H-paniculata_contig15646:4347..5861- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig15646:4347..5861- >mRNA_H-paniculata_contig15646.3279.1 ID=mRNA_H-paniculata_contig15646.3279.1|Name=mRNA_H-paniculata_contig15646.3279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig15646:4347..5861- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |