mRNA_H-paniculata_contig15578.3252.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig15578.3252.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 275 bits (702), Expect = 5.020e-86 Identity = 132/250 (52.80%), Postives = 173/250 (69.20%), Query Frame = 2
Query: 17 PLGRRGCRKHQCIPVELKILASLQVLGRGNCFDDVSQFSLMSESTSQVTFHTFCEHFALELYGEHIFLPTGQALEKVMHEHDQLGFTRAVRSTDVIHIKWDCCPFSFARTYTGKEGFAILPYQATVDHSGCALAVTKGFSGATNEKSIISYDVAVQMVREDPTSSDQTFRLFNKDRAWMEHKGVYLLVDNEYHE*AMLMPPSKRSLTDEETR*SKTLESVRKDVECFFGVL*GRFKILRLPAPYREKEKI 766
P G++ + IPV+LK+LA LQ+L RGNCF D+ S +S T+ TFH F +FA E+Y EHIFLPTG +KVM ++D+LGF+ A STDV HI W CP++ AR+YTGKEG+ + YQ TVDH+ LAVT GF+G+TN+KSII YD AV +REDP S++ F ++ D + KG YLLVDN YH+ L+PPSK + + SK LESVRKDVECFFG++ GRF+IL+L PY ++E I
Sbjct: 141 PTGKQDASGRRGIPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDI 390
BLAST of mRNA_H-paniculata_contig15578.3252.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 264 bits (675), Expect = 8.330e-82 Identity = 129/250 (51.60%), Postives = 170/250 (68.00%), Query Frame = 2
Query: 17 PLGRRGCRKHQCIPVELKILASLQVLGRGNCFDDVSQFSLMSESTSQVTFHTFCEHFALELYGEHIFLPTGQALEKVMHEHDQLGFTRAVRSTDVIHIKWDCCPFSFARTYTGKEGFAILPYQATVDHSGCALAVTKGFSGATNEKSIISYDVAVQMVREDPTSSDQTFRLFNKDRAWMEHKGVYLLVDNEYHE*AMLMPPSKRSLTDEETR*SKTLESVRKDVECFFGVL*GRFKILRLPAPYREKEKI 766
P G Q +PVELK+LA LQ+L RGN F D+ S +S T TFH FC++FA ELY E+++LPTG+ L KVM ++D++GF AV STDV HI W CP++ AR YTGKEG + +Q TVDHSG LAVT+GF+GATN+K+II YD AV +R DP ++Q ++L+ +D E KG YLLVDN YH+ L+PPSK + + SK LES RKDVEC+FG+L GRF+I +L + ++E I
Sbjct: 157 PTGESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYI 406
BLAST of mRNA_H-paniculata_contig15578.3252.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE) HSP 1 Score: 251 bits (641), Expect = 8.520e-78 Identity = 122/237 (51.48%), Postives = 163/237 (68.78%), Query Frame = 2
Query: 56 PVELKILASLQVLGRGNCFDDVSQFSLMSESTSQVTFHTFCEHFALELYGEHIFLPTGQALEKVMHEHDQLGFTRAVRSTDVIHIKWDCCPFSFARTYTGKEGFAILPYQATVDHSGCALAVTKGFSGATNEKSIISYDVAVQMVREDPTSSDQTFRLFNKDRAWMEHKGVYLLVDNEYHE*AMLMPPSKRSLTDEETR*SKTLESVRKDVECFFGVL*GRFKILRLPAPYREKEKI 766
P ++LA LQ+L RGN F D+ S +S T TFH FC++FA ELY E+++LPTG+ L KVM ++D++GF AV STDV HI W CP++ AR YTGKEG + +Q TVDHSG LAVT+GF+GATN+K+II YD AV +R DP ++Q ++L+ +D E KG YLLVDN YH+ L+PPSK + + SK LES RKDVEC+FG+L GRF+I +L + ++E I
Sbjct: 79 PPHTQVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYI 315
BLAST of mRNA_H-paniculata_contig15578.3252.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE) HSP 1 Score: 249 bits (635), Expect = 4.290e-77 Identity = 123/249 (49.40%), Postives = 171/249 (68.67%), Query Frame = 2
Query: 32 GC--RKHQCIPVELKILASLQVLGRGNCFDDVSQFSLMSESTSQVTFHTFCEHFALELYGEHIFLPTGQ--ALEKVMHEHDQLGFTRAVRSTDVIHIKWDCCPFSFARTYTGKEGFAILPYQATVDHSGCALAVTKGFSGATNEKSIISYDVAVQMVREDPTSSDQTFRLFNKDRAWMEHKGVYLLVDNEYHE*AMLMPPSKRSLTDEETR*SKTLESVRKDVECFFGVL*GRFKILRLPAPYREKEKI 766
GC + Q PVE K+LA L +LGRGNCF + Q S MS T Q FH FC+HFA E+Y EHI+LP+ Q L+ VM ++D+LGF+ A+ S DV HI W CP++ AR+YTGKEG + YQ TV+H+G A+AVT+GF+ +TN+K+ + +D V+ +R D +++TF ++N+D KG YLLVDN YH+ +LM P+K L++ + SK LESVRKDVECFFG+L G F+I ++ Y E+E+I
Sbjct: 84 GCDAARRQSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERI 332
BLAST of mRNA_H-paniculata_contig15578.3252.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE) HSP 1 Score: 244 bits (623), Expect = 1.630e-74 Identity = 123/249 (49.40%), Postives = 168/249 (67.47%), Query Frame = 2
Query: 26 RRGCRKHQCIPVELKILASLQVLGRGNCFDDVSQFSLMSESTSQVTFHTFCEHFALELYGEHIFLPTGQ--ALEKVMHEHDQLGFTRAVRSTDVIHIKWDCCPFSFARTYTGKEGFAILPYQATVDHSGCALAVTKGFSGATNEKSIISYDVAVQMVREDPTSSDQTFRLFNKDRAWMEHKGVYLLVDNEYHE*AMLMPPSKRSLTDEETR*SKTLESVRKDVECFFGVL*GRFKILRLPAPYREKEKI 766
+R +C PVE K+LA L +LGRGN F + S MS T Q FH FCEHFA E+Y EHIFLP+ + L++VM ++++LGF A+ STDV HI W CP++ R+YTGKEG + YQ TV+H+G LAVT+GF+G+TN+K+II D AV +R D +++ F + KD KG YL+VDN YH+ ML+ PSK L++ + SK LESVRKDVECFFG+L RF+IL+L Y+++E++
Sbjct: 113 QRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERL 361
BLAST of mRNA_H-paniculata_contig15578.3252.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE) HSP 1 Score: 243 bits (619), Expect = 4.110e-74 Identity = 127/267 (47.57%), Postives = 170/267 (63.67%), Query Frame = 2
Query: 56 PVELKILASLQVLGRGNCFDDVSQFSLMSESTSQVTFHTFCEHFALELYGEHIFLPTGQA--LEKVMHEHDQLGFTRAVRSTDVIHIKWDCCPFSFARTYTGKEGFAILPYQATVDHSGCALAVTKGFSGATNEKSIISYDVAVQMVREDPTSS----------------------------DQTFRLFNKDRAWMEHKGVYLLVDNEYHE*AMLMPPSKRSLTDEETR*SKTLESVRKDVECFFGVL*GRFKILRLPAPYREKEKI 766
PVE K+LA L +LGRGNCF + Q S MS T Q FH FC HFA E+Y E I LPT ++ L+ VM ++D+LGFT AV S DV HI W CP++ AR+YTGKEGF + YQ TVDH+G A+AVT+GF+G+TN+K+I+ +D AV+ + D + ++TF ++N+D KG YLLVDN YH+ +L+ PSK L++ + SK LESVRKDVECFFG+L GRF+IL+L Y+ +E+I
Sbjct: 81 PVEHKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERI 347
BLAST of mRNA_H-paniculata_contig15578.3252.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE) HSP 1 Score: 231 bits (588), Expect = 2.690e-70 Identity = 118/248 (47.58%), Postives = 159/248 (64.11%), Query Frame = 2
Query: 23 GRRGCRKHQCIPVELKILASLQVLGRGNCFDDVSQFSLMSESTSQVTFHTFCEHFALELYGEHIFLPTGQALEKVMHEHDQLGFTRAVRSTDVIHIKWDCCPFSFARTYTGKEGFAILPYQATVDHSGCALAVTKGFSGATNEKSIISYDVAVQMVREDPTSSDQTFRLFNKDRAWMEHKGVYLLVDNEYHE*AMLMPPSKRSLTDEETR*SKTLESVRKDVECFFGVL*GRFKILRLPAPYREKEKI 766
G + + IP+ELK VLG+GNCFDDV Q S MSES +Q FH FC H A E++ EHI+LPTG L++VM QLG T A STDV HI + CPF+ R++TGKEGF + Y+ TVDH+G ALAVT GF+G TN+K+ I YD V +R + +++ ++L + +G +L+VDN Y+E ++E+T S+ LESVRKDVECFFG+L GRF+IL+L PY ++E I
Sbjct: 123 GEKDAANREGIPLELK------VLGKGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCFLIVDNGYYE------------SNEDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYI 352
BLAST of mRNA_H-paniculata_contig15578.3252.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE) HSP 1 Score: 229 bits (585), Expect = 7.360e-70 Identity = 124/260 (47.69%), Postives = 165/260 (63.46%), Query Frame = 2
Query: 11 VVPLGRRGCR------KHQCIPVELKILAS--LQVLGRGNCFDDVSQFSLMSESTSQVTFHTFCEHFALELYGEHIFLPTGQALEKVMHEHDQLGFTRAVRSTDVIHIKWDCCPFSFARTYTGKEGFAILPYQATVDHSGCALAVTKGFSGATNEKSIISYDVAVQMVREDPTSSDQTFRLFNKDRAWMEHKGVYLLVDNEYHE*AMLMPPSKRSLTDEETR*SKTLESVRKDVECFFGVL*GRFKILRLPAPYREKEKI 766
+V L R G R KHQ + ++ +I AS QVLG+GNCFDDV Q S MS+S +Q TFH FC HFA E++ EHI+LPTG L++VM QLG+T A STDV HI W+ CPF+ R++TGKEGF + Y TVDH G LAVT GF+GATN+K+II YD V +R +++ ++L + +G +L+VDN YHE L+ PSK +E+T S+ LESVRKDV CF +IL+L PY ++E +
Sbjct: 10 LVTLTRHGSRVSVCQQKHQNLCID-RIRASDVPQVLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGCF--------RILKLRMPYHKREYV 260
BLAST of mRNA_H-paniculata_contig15578.3252.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE) HSP 1 Score: 223 bits (568), Expect = 1.220e-66 Identity = 110/252 (43.65%), Postives = 155/252 (61.51%), Query Frame = 2
Query: 11 VVPLGRRGCRKHQCIPVELKILASLQVLGRGNCFDDVSQFSLMSESTSQVTFHTFCEHFALELYGEHIFLPTGQALEKVMHEHDQLGFTRAVRSTDVIHIKWDCCPFSFARTYTGKEGFAILPYQATVDHSGCALAVTKGFSGATNEKSIISYDVAVQMVREDPTSSDQTFRLFNKDRAWMEHKGVYLLVDNEYHE*AMLMPPSKRSLTDEETR*SKTLESVRKDVECFFGVL*GRFKILRLPAPYREKEKI 766
V P R QC+P+ELK+L LQVLGRGNCF DV+Q SLMS T++ +FH FC+ F+ L+ + + LP G+ L+KV E+ +G AV S D HI W CPFS T+ GKEG+ L Y+A+ DHSG L+ TKGF GA N+K+++ D++V +RE+ + F LF+ + EH G +L+VD YH L+ P K ++ + SK ES+RKD+EC FG L GRF++ + + +EKI
Sbjct: 93 VFPTATRDVAGRQCVPLELKVLGVLQVLGRGNCFADVAQLSLMSRQTAEKSFHRFCDCFSSGLWHQWVTLPEGEVLKKVAGEYGDMGCPGAVASVDCTHISWPACPFSETNTHKGKEGYTTLVYEASCDHSGRILSSTKGFPGAENDKTVVKRDLSVLRMREEEPWASYKFVLFDLEGNTTEHTGGWLIVDGGYHRVPSLICPFKEYASEAQQEWSKRFESIRKDIECLFGRLKGRFRLFKTGILFGTREKI 344
BLAST of mRNA_H-paniculata_contig15578.3252.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE) HSP 1 Score: 214 bits (546), Expect = 1.670e-64 Identity = 113/248 (45.56%), Postives = 157/248 (63.31%), Query Frame = 2
Query: 50 CIPV-------ELKILASLQVLGRGNCFDDVSQFSLMSESTSQVTFHTFCEHFALELYGEHIFLPTGQA--LEKVMHEHDQLGFTRAVRSTDVIHIKWDCCPFSFARTYTGKEGFAILPYQATVDHSGCALAVTKGFSGATNEKSIISYDVAVQMVREDPTSSDQTFRLFNKDRAWMEHKGVYLLVDNEYHE*AMLMPPSKRSLTDEETR*SKTLESVRKDVECFFGVL*GRFKILRLPAPYREKEKI 766
CIPV L++LA L +LG+GNCF + Q S MS T Q FH FC FA E+Y EHI LP ++ L VM ++D+LG CP++ AR+YTGK+ F + YQ TVDH+ A+AVT+GF+G+TN+K+I+ +D AV +R D +++TF L+N+D KG Y L DN YH+ +L+ PSK L++++ SK LESVRKDVECFFG+L GRF+IL+L Y+ +E+I
Sbjct: 7 CIPVCTCVGDLVLQVLAWLTILGKGNCFASIFQMSWMSAKTVQGVFHKFCRLFAREMYDEHIHLPAEESGKLHHVMKQYDRLG-----------------CPYNQARSYTGKDWFPTIAYQVTVDHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERI 237 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15578.3252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig15578.3252.1 >prot_H-paniculata_contig15578.3252.1 ID=prot_H-paniculata_contig15578.3252.1|Name=mRNA_H-paniculata_contig15578.3252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp MSESTSQVTFHTFCEHFALELYGEHIFLPTGQALEKVMHEHDQLGFTRAVback to top mRNA from alignment at H-paniculata_contig15578:872..3576- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig15578.3252.1 ID=mRNA_H-paniculata_contig15578.3252.1|Name=mRNA_H-paniculata_contig15578.3252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2705bp|location=Sequence derived from alignment at H-paniculata_contig15578:872..3576- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig15578:872..3576- >mRNA_H-paniculata_contig15578.3252.1 ID=mRNA_H-paniculata_contig15578.3252.1|Name=mRNA_H-paniculata_contig15578.3252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at H-paniculata_contig15578:872..3576- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |