mRNA_H-paniculata_contig15578.3252.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15578.3252.1
Unique NamemRNA_H-paniculata_contig15578.3252.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15578.3252.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 275 bits (702), Expect = 5.020e-86
Identity = 132/250 (52.80%), Postives = 173/250 (69.20%), Query Frame = 2
Query:   17 PLGRRGCRKHQCIPVELKILASLQVLGRGNCFDDVSQFSLMSESTSQVTFHTFCEHFALELYGEHIFLPTGQALEKVMHEHDQLGFTRAVRSTDVIHIKWDCCPFSFARTYTGKEGFAILPYQATVDHSGCALAVTKGFSGATNEKSIISYDVAVQMVREDPTSSDQTFRLFNKDRAWMEHKGVYLLVDNEYHE*AMLMPPSKRSLTDEETR*SKTLESVRKDVECFFGVL*GRFKILRLPAPYREKEKI 766
            P G++     + IPV+LK+LA LQ+L RGNCF D+   S +S  T+  TFH F  +FA E+Y EHIFLPTG   +KVM ++D+LGF+ A  STDV HI W  CP++ AR+YTGKEG+  + YQ TVDH+   LAVT GF+G+TN+KSII YD AV  +REDP  S++ F ++  D    + KG YLLVDN YH+   L+PPSK  +   +   SK LESVRKDVECFFG++ GRF+IL+L  PY ++E I
Sbjct:  141 PTGKQDASGRRGIPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDI 390          
BLAST of mRNA_H-paniculata_contig15578.3252.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 8.330e-82
Identity = 129/250 (51.60%), Postives = 170/250 (68.00%), Query Frame = 2
Query:   17 PLGRRGCRKHQCIPVELKILASLQVLGRGNCFDDVSQFSLMSESTSQVTFHTFCEHFALELYGEHIFLPTGQALEKVMHEHDQLGFTRAVRSTDVIHIKWDCCPFSFARTYTGKEGFAILPYQATVDHSGCALAVTKGFSGATNEKSIISYDVAVQMVREDPTSSDQTFRLFNKDRAWMEHKGVYLLVDNEYHE*AMLMPPSKRSLTDEETR*SKTLESVRKDVECFFGVL*GRFKILRLPAPYREKEKI 766
            P G       Q +PVELK+LA LQ+L RGN F D+   S +S  T   TFH FC++FA ELY E+++LPTG+ L KVM ++D++GF  AV STDV HI W  CP++ AR YTGKEG   + +Q TVDHSG  LAVT+GF+GATN+K+II YD AV  +R DP  ++Q ++L+ +D    E KG YLLVDN YH+   L+PPSK  +   +   SK LES RKDVEC+FG+L GRF+I +L   + ++E I
Sbjct:  157 PTGESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYI 406          
BLAST of mRNA_H-paniculata_contig15578.3252.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 8.520e-78
Identity = 122/237 (51.48%), Postives = 163/237 (68.78%), Query Frame = 2
Query:   56 PVELKILASLQVLGRGNCFDDVSQFSLMSESTSQVTFHTFCEHFALELYGEHIFLPTGQALEKVMHEHDQLGFTRAVRSTDVIHIKWDCCPFSFARTYTGKEGFAILPYQATVDHSGCALAVTKGFSGATNEKSIISYDVAVQMVREDPTSSDQTFRLFNKDRAWMEHKGVYLLVDNEYHE*AMLMPPSKRSLTDEETR*SKTLESVRKDVECFFGVL*GRFKILRLPAPYREKEKI 766
            P   ++LA LQ+L RGN F D+   S +S  T   TFH FC++FA ELY E+++LPTG+ L KVM ++D++GF  AV STDV HI W  CP++ AR YTGKEG   + +Q TVDHSG  LAVT+GF+GATN+K+II YD AV  +R DP  ++Q ++L+ +D    E KG YLLVDN YH+   L+PPSK  +   +   SK LES RKDVEC+FG+L GRF+I +L   + ++E I
Sbjct:   79 PPHTQVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYI 315          
BLAST of mRNA_H-paniculata_contig15578.3252.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 4.290e-77
Identity = 123/249 (49.40%), Postives = 171/249 (68.67%), Query Frame = 2
Query:   32 GC--RKHQCIPVELKILASLQVLGRGNCFDDVSQFSLMSESTSQVTFHTFCEHFALELYGEHIFLPTGQ--ALEKVMHEHDQLGFTRAVRSTDVIHIKWDCCPFSFARTYTGKEGFAILPYQATVDHSGCALAVTKGFSGATNEKSIISYDVAVQMVREDPTSSDQTFRLFNKDRAWMEHKGVYLLVDNEYHE*AMLMPPSKRSLTDEETR*SKTLESVRKDVECFFGVL*GRFKILRLPAPYREKEKI 766
            GC   + Q  PVE K+LA L +LGRGNCF  + Q S MS  T Q  FH FC+HFA E+Y EHI+LP+ Q   L+ VM ++D+LGF+ A+ S DV HI W  CP++ AR+YTGKEG   + YQ TV+H+G A+AVT+GF+ +TN+K+ + +D  V+ +R D   +++TF ++N+D      KG YLLVDN YH+  +LM P+K  L++ +   SK LESVRKDVECFFG+L G F+I ++   Y E+E+I
Sbjct:   84 GCDAARRQSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERI 332          
BLAST of mRNA_H-paniculata_contig15578.3252.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 244 bits (623), Expect = 1.630e-74
Identity = 123/249 (49.40%), Postives = 168/249 (67.47%), Query Frame = 2
Query:   26 RRGCRKHQCIPVELKILASLQVLGRGNCFDDVSQFSLMSESTSQVTFHTFCEHFALELYGEHIFLPTGQ--ALEKVMHEHDQLGFTRAVRSTDVIHIKWDCCPFSFARTYTGKEGFAILPYQATVDHSGCALAVTKGFSGATNEKSIISYDVAVQMVREDPTSSDQTFRLFNKDRAWMEHKGVYLLVDNEYHE*AMLMPPSKRSLTDEETR*SKTLESVRKDVECFFGVL*GRFKILRLPAPYREKEKI 766
            +R     +C PVE K+LA L +LGRGN F  +   S MS  T Q  FH FCEHFA E+Y EHIFLP+ +   L++VM ++++LGF  A+ STDV HI W  CP++  R+YTGKEG   + YQ TV+H+G  LAVT+GF+G+TN+K+II  D AV  +R D   +++ F +  KD      KG YL+VDN YH+  ML+ PSK  L++ +   SK LESVRKDVECFFG+L  RF+IL+L   Y+++E++
Sbjct:  113 QRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERL 361          
BLAST of mRNA_H-paniculata_contig15578.3252.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 243 bits (619), Expect = 4.110e-74
Identity = 127/267 (47.57%), Postives = 170/267 (63.67%), Query Frame = 2
Query:   56 PVELKILASLQVLGRGNCFDDVSQFSLMSESTSQVTFHTFCEHFALELYGEHIFLPTGQA--LEKVMHEHDQLGFTRAVRSTDVIHIKWDCCPFSFARTYTGKEGFAILPYQATVDHSGCALAVTKGFSGATNEKSIISYDVAVQMVREDPTSS----------------------------DQTFRLFNKDRAWMEHKGVYLLVDNEYHE*AMLMPPSKRSLTDEETR*SKTLESVRKDVECFFGVL*GRFKILRLPAPYREKEKI 766
            PVE K+LA L +LGRGNCF  + Q S MS  T Q  FH FC HFA E+Y E I LPT ++  L+ VM ++D+LGFT AV S DV HI W  CP++ AR+YTGKEGF  + YQ TVDH+G A+AVT+GF+G+TN+K+I+ +D AV+ +  D   +                            ++TF ++N+D      KG YLLVDN YH+  +L+ PSK  L++ +   SK LESVRKDVECFFG+L GRF+IL+L   Y+ +E+I
Sbjct:   81 PVEHKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERI 347          
BLAST of mRNA_H-paniculata_contig15578.3252.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 2.690e-70
Identity = 118/248 (47.58%), Postives = 159/248 (64.11%), Query Frame = 2
Query:   23 GRRGCRKHQCIPVELKILASLQVLGRGNCFDDVSQFSLMSESTSQVTFHTFCEHFALELYGEHIFLPTGQALEKVMHEHDQLGFTRAVRSTDVIHIKWDCCPFSFARTYTGKEGFAILPYQATVDHSGCALAVTKGFSGATNEKSIISYDVAVQMVREDPTSSDQTFRLFNKDRAWMEHKGVYLLVDNEYHE*AMLMPPSKRSLTDEETR*SKTLESVRKDVECFFGVL*GRFKILRLPAPYREKEKI 766
            G +     + IP+ELK      VLG+GNCFDDV Q S MSES +Q  FH FC H A E++ EHI+LPTG  L++VM    QLG T A  STDV HI  + CPF+  R++TGKEGF  + Y+ TVDH+G ALAVT GF+G TN+K+ I YD  V  +R +   +++ ++L   +      +G +L+VDN Y+E            ++E+T  S+ LESVRKDVECFFG+L GRF+IL+L  PY ++E I
Sbjct:  123 GEKDAANREGIPLELK------VLGKGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCFLIVDNGYYE------------SNEDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYI 352          
BLAST of mRNA_H-paniculata_contig15578.3252.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 7.360e-70
Identity = 124/260 (47.69%), Postives = 165/260 (63.46%), Query Frame = 2
Query:   11 VVPLGRRGCR------KHQCIPVELKILAS--LQVLGRGNCFDDVSQFSLMSESTSQVTFHTFCEHFALELYGEHIFLPTGQALEKVMHEHDQLGFTRAVRSTDVIHIKWDCCPFSFARTYTGKEGFAILPYQATVDHSGCALAVTKGFSGATNEKSIISYDVAVQMVREDPTSSDQTFRLFNKDRAWMEHKGVYLLVDNEYHE*AMLMPPSKRSLTDEETR*SKTLESVRKDVECFFGVL*GRFKILRLPAPYREKEKI 766
            +V L R G R      KHQ + ++ +I AS   QVLG+GNCFDDV Q S MS+S +Q TFH FC HFA E++ EHI+LPTG  L++VM    QLG+T A  STDV HI W+ CPF+  R++TGKEGF  + Y  TVDH G  LAVT GF+GATN+K+II YD  V  +R     +++ ++L   +      +G +L+VDN YHE   L+ PSK    +E+T  S+ LESVRKDV CF        +IL+L  PY ++E +
Sbjct:   10 LVTLTRHGSRVSVCQQKHQNLCID-RIRASDVPQVLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGCF--------RILKLRMPYHKREYV 260          
BLAST of mRNA_H-paniculata_contig15578.3252.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 1.220e-66
Identity = 110/252 (43.65%), Postives = 155/252 (61.51%), Query Frame = 2
Query:   11 VVPLGRRGCRKHQCIPVELKILASLQVLGRGNCFDDVSQFSLMSESTSQVTFHTFCEHFALELYGEHIFLPTGQALEKVMHEHDQLGFTRAVRSTDVIHIKWDCCPFSFARTYTGKEGFAILPYQATVDHSGCALAVTKGFSGATNEKSIISYDVAVQMVREDPTSSDQTFRLFNKDRAWMEHKGVYLLVDNEYHE*AMLMPPSKRSLTDEETR*SKTLESVRKDVECFFGVL*GRFKILRLPAPYREKEKI 766
            V P   R     QC+P+ELK+L  LQVLGRGNCF DV+Q SLMS  T++ +FH FC+ F+  L+ + + LP G+ L+KV  E+  +G   AV S D  HI W  CPFS   T+ GKEG+  L Y+A+ DHSG  L+ TKGF GA N+K+++  D++V  +RE+   +   F LF+ +    EH G +L+VD  YH    L+ P K   ++ +   SK  ES+RKD+EC FG L GRF++ +    +  +EKI
Sbjct:   93 VFPTATRDVAGRQCVPLELKVLGVLQVLGRGNCFADVAQLSLMSRQTAEKSFHRFCDCFSSGLWHQWVTLPEGEVLKKVAGEYGDMGCPGAVASVDCTHISWPACPFSETNTHKGKEGYTTLVYEASCDHSGRILSSTKGFPGAENDKTVVKRDLSVLRMREEEPWASYKFVLFDLEGNTTEHTGGWLIVDGGYHRVPSLICPFKEYASEAQQEWSKRFESIRKDIECLFGRLKGRFRLFKTGILFGTREKI 344          
BLAST of mRNA_H-paniculata_contig15578.3252.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 1.670e-64
Identity = 113/248 (45.56%), Postives = 157/248 (63.31%), Query Frame = 2
Query:   50 CIPV-------ELKILASLQVLGRGNCFDDVSQFSLMSESTSQVTFHTFCEHFALELYGEHIFLPTGQA--LEKVMHEHDQLGFTRAVRSTDVIHIKWDCCPFSFARTYTGKEGFAILPYQATVDHSGCALAVTKGFSGATNEKSIISYDVAVQMVREDPTSSDQTFRLFNKDRAWMEHKGVYLLVDNEYHE*AMLMPPSKRSLTDEETR*SKTLESVRKDVECFFGVL*GRFKILRLPAPYREKEKI 766
            CIPV        L++LA L +LG+GNCF  + Q S MS  T Q  FH FC  FA E+Y EHI LP  ++  L  VM ++D+LG                 CP++ AR+YTGK+ F  + YQ TVDH+  A+AVT+GF+G+TN+K+I+ +D AV  +R D   +++TF L+N+D      KG Y L DN YH+  +L+ PSK  L++++   SK LESVRKDVECFFG+L GRF+IL+L   Y+ +E+I
Sbjct:    7 CIPVCTCVGDLVLQVLAWLTILGKGNCFASIFQMSWMSAKTVQGVFHKFCRLFAREMYDEHIHLPAEESGKLHHVMKQYDRLG-----------------CPYNQARSYTGKDWFPTIAYQVTVDHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERI 237          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15578.3252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAU4_9PHAE5.020e-8652.80Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE8.330e-8251.60Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY50_9PHAE8.520e-7851.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE4.290e-7749.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE1.630e-7449.40Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE4.110e-7447.57DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KSI7_9PHAE2.690e-7047.58DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5K796_9PHAE7.360e-7047.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV45_9PHAE1.220e-6643.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUX7_9PHAE1.670e-6445.56DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15578contigH-paniculata_contig15578:872..3576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.5
Seed ortholog evalue5.1e-33
Seed eggNOG ortholog2880.D7FSK2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size892
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15578.3252.1prot_H-paniculata_contig15578.3252.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15578 1163..2143 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929245.9883282-UTR-H-paniculata_contig15578:871..11621622929245.9883282-UTR-H-paniculata_contig15578:871..1162Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15578 872..1162 -
1691480785.5121648-UTR-H-paniculata_contig15578:871..11621691480785.5121648-UTR-H-paniculata_contig15578:871..1162Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15578 872..1162 -
1622929246.0447228-UTR-H-paniculata_contig15578:2143..22091622929246.0447228-UTR-H-paniculata_contig15578:2143..2209Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15578 2144..2209 -
1691480785.5426514-UTR-H-paniculata_contig15578:2143..22091691480785.5426514-UTR-H-paniculata_contig15578:2143..2209Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15578 2144..2209 -
1622929246.0579998-UTR-H-paniculata_contig15578:3506..35761622929246.0579998-UTR-H-paniculata_contig15578:3506..3576Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15578 3507..3576 -
1691480785.552328-UTR-H-paniculata_contig15578:3506..35761691480785.552328-UTR-H-paniculata_contig15578:3506..3576Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15578 3507..3576 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929246.0060477-CDS-H-paniculata_contig15578:1162..11651622929246.0060477-CDS-H-paniculata_contig15578:1162..1165Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15578 1163..1165 -
1691480785.5242953-CDS-H-paniculata_contig15578:1162..11651691480785.5242953-CDS-H-paniculata_contig15578:1162..1165Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15578 1163..1165 -
1622929246.0266783-CDS-H-paniculata_contig15578:1681..21431622929246.0266783-CDS-H-paniculata_contig15578:1681..2143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15578 1682..2143 -
1691480785.5329528-CDS-H-paniculata_contig15578:1681..21431691480785.5329528-CDS-H-paniculata_contig15578:1681..2143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15578 1682..2143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15578.3252.1

>prot_H-paniculata_contig15578.3252.1 ID=prot_H-paniculata_contig15578.3252.1|Name=mRNA_H-paniculata_contig15578.3252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp
MSESTSQVTFHTFCEHFALELYGEHIFLPTGQALEKVMHEHDQLGFTRAV
RSTDVIHIKWDCCPFSFARTYTGKEGFAILPYQATVDHSGCALAVTKGFS
GATNEKSIISYDVAVQMVREDPTSSDQTFRLFNKDRAWMEHKGVYLLVDN
EYHE*
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mRNA from alignment at H-paniculata_contig15578:872..3576-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15578.3252.1 ID=mRNA_H-paniculata_contig15578.3252.1|Name=mRNA_H-paniculata_contig15578.3252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2705bp|location=Sequence derived from alignment at H-paniculata_contig15578:872..3576- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGAGAAGAGGTAGTTCCTCTCGGCAGAAGAGGATGTCGCAAACACCAGT GCATCCCAGTTGAGCTGAAGGTGGGTCAGTGTCTCTAGCTTGACAACTGT GCAATGGCAATGGAGGTACTGGTTTGATGATGCTGCAGTTGACTATATCT CACGTGCATGATACTGGAAAGTACGGTGCCGTAATTTTACCCAACTATAC CGTACTGTATGATATTAACAGTGTACGGTACTGCACTGTACCACACTGCA GTCTATAGTACTATATTGTAATGTATAGTACAGTTGTACTATACCCGACT ATACTGTCTGTACTCTACTGTAAACTACTGCACTAACCCCACTCTACAAT ACTGCACTGCACACTGCTGTACTAAAACTACTTTGTCGTGTACTGTGCTG TACCGAACCGCACTGTACTGAACTGTACTGTACTCCACCGTGCTGCATGA CGTCGAGTTGCTCACATCCATCGACCTCTGCCTGCAGTCATGTCTGTGCA TGGTTGCGCAACAACACAATCTGCTGACGAATACCTGTAGCTTTTTCTCG CAGTGCTCATCGCGACGTACCTGTTTAGTTACGCTATGTTAGATATAATT TTGTCTGCAAGTGAGTCTTTACATTTGCCAAGTTTAAAAGCCTTGAAGGC TCATCAAGCTGGAAAAATATCGCACCAAACAAACCTAAATCCTATTGGTG CGGCAAATGCGTCGAAGTCATAAAGGTTAAATCCCACAAAAATATTCAAA TCCAAAGCAACGTCGGTTTTGCTGCGTTTAATTATCTGCGTGGCCTTTGT CTACATTGTTTTTTATTATCTGTGCGGCTAAAATAATAGCCTGGTTATGT TACGGTAATACCGTCGATCCCACCGTCCTTAAGCCGGCGAATGATGTGGC ATTTAACCTGCAGGTTGAAATATGGCACAAAATCCCTGCACAACACCGCT GAGAGACGACTGTTCTGTGGTATACTTTACAGCCTCTACCGCCACATCCG TCGATCAAATTACAGATATTGCTCTCTGCTGTGCGGGCTGTCCATGTTTA TCCCCCATGGTATTGTGGCACTGTTCGGCATTGCATGCCGAGACTACTCC ATAAGCGCAGTCAGTCAGCGATATCGTACCTAGGACATGCAATGAAAATA TGTAATGGTACCCTGGTACATGTACGCACTACCTCGCGAACGGATAACCC TAGAGTCGGCTAGACACCACGGAGGATAGGTGCACGGCGAGTAACGTTGC CCATGTTTTTCAGCCAATGGCAAACTCCCTATCATGATCAGTCATACCAG CTCACATCCTCAGCCAAGCGAAACCTAACATATTTTGCGCGTGTCCCCCC CCTCCTCCTCGTATCAGATTCTTGCTTCCCTTCAGGTACTGGGTAGGGGA AACTGCTTTGACGACGTCTCCCAGTTCTCCCTCATGAGCGAGTCGACGTC ACAAGTCACATTCCACACGTTCTGCGAGCATTTCGCGTTGGAGCTGTACG GTGAACATATCTTCCTCCCTACCGGGCAGGCTCTCGAGAAGGTCATGCAT GAACATGACCAGTTGGGATTCACCAGGGCAGTCCGCTCAACCGATGTTAT CCACATCAAATGGGATTGCTGCCCGTTCTCCTTTGCCCGCACCTACACGG GCAAAGAAGGATTTGCAATCCTCCCATACCAAGCGACGGTCGACCATAGC GGTTGCGCCCTTGCCGTCACGAAGGGCTTTTCTGGCGCTACCAACGAGAA GTCAATCATCAGTTACGACGTGGCGGTGCAAATGGTCCGCGAGGATCCCA CATCCAGTGACCAGACATTCAGACTCTTCAACAAGGACAGGGCATGGATG GAACATAAGGGAGTCTACCTGCTGGTGGACAATGAGTATCATGAGGTGAG AAAGTCAAGGGCATGGTTCTAATAAGCGAAGACTTACTATTACCGAGAAC TACAGGTTAAGTTCAATGCAGCCAAAACGCGAAGGGTTTGAGTTAGGTTT ACGTGCCTGTTTTTTTTTGTTTTTTAACCCCCGGAACGCTAAGGCAAAAA TCTCTATCCGATGCTCCCATGCCACAGTATGTCTACATTTCCTTTAACAG AACAGAGTTATATATTTTTTACGTGCCTCTTGTACCACCGTCACATCTAA ATTGCGAGTTGACAATGTTCACAGCGTTTAAAAGTAGCGAGACTCATTCG CTCCGCAACCAAACTCACCTTTCAAAATGACGAATTCGATTACAATTGAT CTTTGCCCAATTTTCATTTTTTTGCCGGCATTGCCGCCTGGTGCGCCCAT TTCAGTCGGTGATAACAGCCCCGTGTGCGAAACCAACACACACACACATC CTCGCTCTGTGGAAACCCAACACCCTCTCATCAACCCCATCGCGTCTTCA CACACATGCAGTAGGCTATGCTCATGCCCCCTTCAAAGCGCTCCTTGACC GATGAGGAGACACGGTGAAGCAAGACGTTGGAGAGCGTTCGAAAGGATGT GGAGTGTTTCTTCGGCGTCCTGTAGGGCAGGTTCAAAATCCTCAGGCTTC CCGCCCCCTACCGTGAAAAAGAAAAAATCGGCCCGCGTCCTCTAGTACAT CCAAGCCGTCGTGAGCGTTGAACATGTTTTGGAGGACTGGGCGGGGGTGG ACGGTCAGCACGACCCTGAGGTTGCTGAGCCTGAGACGGACCACGGATTG GTCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig15578:872..3576-

>mRNA_H-paniculata_contig15578.3252.1 ID=mRNA_H-paniculata_contig15578.3252.1|Name=mRNA_H-paniculata_contig15578.3252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at H-paniculata_contig15578:872..3576- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCGAGTCGACGTCACAAGTCACATTCCACACGTTCTGCGAGCATTT
CGCGTTGGAGCTGTACGGTGAACATATCTTCCTCCCTACCGGGCAGGCTC
TCGAGAAGGTCATGCATGAACATGACCAGTTGGGATTCACCAGGGCAGTC
CGCTCAACCGATGTTATCCACATCAAATGGGATTGCTGCCCGTTCTCCTT
TGCCCGCACCTACACGGGCAAAGAAGGATTTGCAATCCTCCCATACCAAG
CGACGGTCGACCATAGCGGTTGCGCCCTTGCCGTCACGAAGGGCTTTTCT
GGCGCTACCAACGAGAAGTCAATCATCAGTTACGACGTGGCGGTGCAAAT
GGTCCGCGAGGATCCCACATCCAGTGACCAGACATTCAGACTCTTCAACA
AGGACAGGGCATGGATGGAACATAAGGGAGTCTACCTGCTGGTGGACAAT
GAGTATCATGAGATGAGCGAGTCGACGTCACAAGTCACATTCCACACGTT
CTGCGAGCATTTCGCGTTGGAGCTGTACGGTGAACATATCTTCCTCCCTA
CCGGGCAGGCTCTCGAGAAGGTCATGCATGAACATGACCAGTTGGGATTC
ACCAGGGCAGTCCGCTCAACCGATGTTATCCACATCAAATGGGATTGCTG
CCCGTTCTCCTTTGCCCGCACCTACACGGGCAAAGAAGGATTTGCAATCC
TCCCATACCAAGCGACGGTCGACCATAGCGGTTGCGCCCTTGCCGTCACG
AAGGGCTTTTCTGGCGCTACCAACGAGAAGTCAATCATCAGTTACGACGT
GGCGGTGCAAATGGTCCGCGAGGATCCCACATCCAGTGACCAGACATTCA
GACTCTTCAACAAGGACAGGGCATGGATGGAACATAAGGGAGTCTACCTG
CTGGTGGACAATGAGTATCATGAGTAGTAG
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