mRNA_H-paniculata_contig1557.3248.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1557.3248.1 vs. uniprot
Match: A0A6H5KY81_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY81_9PHAE) HSP 1 Score: 103 bits (257), Expect = 8.570e-23 Identity = 62/183 (33.88%), Postives = 104/183 (56.83%), Query Frame = 1
Query: 7 MRRMIDN----GVWEKIAR-PKDMFVVGTEILYERKVSKNGKVEEYKRRLVAQDFRQIEGVHCTEKYSPTPATASIRTLLATAAAKDGELPHFDAEQAFLKADI---VYIEIPERFQHFLGAVGKLNKAICELVQAGRC*NIKFCDDIAAIRFELSRADPCMFSKVVNGEVEMVVVVHVDKIL 531
M++ ID G + K+ P+ +G+E ++ K ++ G + ++K R+VA+ F QI G+ S P ASI+T++A A K +L H+D +QA++ A + +Y+ PE G V K+ +A+ L Q+GR ++ D + +E R DPC+F KVV+GEV ++V++VD IL
Sbjct: 121 MKKEIDGRDKTGTFTKVMELPEGRKAIGSEWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPPAASIKTMIAVATEKGKKLDHWDVKQAYIHATLNEEIYLRFPEGHGSMSGKVVKVERALYGLKQSGREWGVEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIL 303
BLAST of mRNA_H-paniculata_contig1557.3248.1 vs. uniprot
Match: A0A4Y2K0U2_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2K0U2_ARAVE) HSP 1 Score: 102 bits (253), Expect = 6.060e-22 Identity = 67/181 (37.02%), Postives = 95/181 (52.49%), Query Frame = 1
Query: 4 EMRRMIDNGVWEKIARPKDMFVVGTEILYERKVSKNGKVEEYKRRLVAQDFRQIEGVHCTEKYSPTPATASIRTLLATAAAKDGELPHFDAEQAFLKADI---VYIEIPERFQHF--LGAVGKLNKAICELVQAGRC*NIKFCDDIAAIRFELSRADPCMFSKVVNGEVEMVVVVHVDKIL 531
EM+ + N W+ + P V+G ++ K G +E YK RLVAQ F Q G E ++P +IRT LA AA K+ + H D + AFL ++ VY+ PE + V KLNKAI L QA R ++K + + FE S+ADPC+F V NG M ++V+VD +L
Sbjct: 129 EMKSLQKNETWKLVTPPSGKKVIGCRWTFKAKYDSKGNIERYKARLVAQGFSQKFGTDYDETFAPVVTYTTIRTFLAAAAHKNLNVTHVDIKTAFLHGNLEDEVYMSQPEGYIETGQEQKVCKLNKAIYGLKQAARAWHLKIGESLIKYGFEQSKADPCLFKFVNNGN-PMYIIVYVDDLL 308
BLAST of mRNA_H-paniculata_contig1557.3248.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE) HSP 1 Score: 100 bits (250), Expect = 1.600e-21 Identity = 61/183 (33.33%), Postives = 104/183 (56.83%), Query Frame = 1
Query: 7 MRRMIDN----GVWEKIAR-PKDMFVVGTEILYERKVSKNGKVEEYKRRLVAQDFRQIEGVHCTEKYSPTPATASIRTLLATAAAKDGELPHFDAEQAFLKADI---VYIEIPERFQHFLGAVGKLNKAICELVQAGRC*NIKFCDDIAAIRFELSRADPCMFSKVVNGEVEMVVVVHVDKIL 531
M++ ID G + K+ P+ +G++ ++ K ++ G + ++K R+VA+ F QI G+ S P+ ASI+T++A A K +L H+D +QA++ A + +Y+ PE G V K+ +A+ L Q+GR + D + +E R DPC+F KVV+GEV ++V++VD IL
Sbjct: 477 MKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHRSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIL 659
BLAST of mRNA_H-paniculata_contig1557.3248.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 1.980e-21 Identity = 60/183 (32.79%), Postives = 104/183 (56.83%), Query Frame = 1
Query: 7 MRRMIDN----GVWEKIAR-PKDMFVVGTEILYERKVSKNGKVEEYKRRLVAQDFRQIEGVHCTEKYSPTPATASIRTLLATAAAKDGELPHFDAEQAFLKADI---VYIEIPERFQHFLGAVGKLNKAICELVQAGRC*NIKFCDDIAAIRFELSRADPCMFSKVVNGEVEMVVVVHVDKIL 531
M++ ID G + K+ P+ +G++ ++ K ++ G + ++K R+VA+ F QI G+ S P+ AS++T++A A K +L H+D +QA++ A + +Y+ PE G V K+ +A+ L Q+GR + D + +E R DPC+F KVV+GEV ++V++VD IL
Sbjct: 35 MKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLILDFKARVVARGFSQIPGIDFHRSSSACPSAASLKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIEYGYEQCRVDPCIFRKVVDGEVVGLIVINVDDIL 217
BLAST of mRNA_H-paniculata_contig1557.3248.1 vs. uniprot
Match: A0A182H011_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182H011_AEDAL) HSP 1 Score: 95.5 bits (236), Expect = 2.040e-21 Identity = 66/182 (36.26%), Postives = 103/182 (56.59%), Query Frame = 1
Query: 4 EMRRMIDNGVWEKIARPKDMFVVGTEILYERKVSKNGKVEEYKRRLVAQDFRQIEGVHCTEKYSPTPATASIRTLLATAAAKDGELPHFDAEQAFLKADI---VYIEIPERFQHFLGA---VGKLNKAICELVQAGRC*NIKFCDDIAAIRFELSRADPCMFSKVVNGEVEMVVVVHVDKIL 531
E+R +NG W+ + P VG + +Y+ K + G+ +YK RLVAQ F Q G E ++P ++RTLLA A+ ++ L HFD + A+L + +Y+ P F+ G V KL K+I L Q+ RC N + + ++F+ SRADPC+++KVVNG + ++V+VD IL
Sbjct: 3 ELRSHEENGTWKLVDPPPGRKPVGCKWVYKIKRNAAGEAVKYKARLVAQGFNQKYGQDYDEVFAPVIKQTTLRTLLAIASKRNLILKHFDVKTAYLYGTLEEELYMRQPGGFE-VAGQERKVCKLVKSIYGLKQSARCWNHRLHAVLLGLKFKQSRADPCLYTKVVNGR-RIYLLVYVDDIL 182
BLAST of mRNA_H-paniculata_contig1557.3248.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE) HSP 1 Score: 100 bits (249), Expect = 2.310e-21 Identity = 61/183 (33.33%), Postives = 103/183 (56.28%), Query Frame = 1
Query: 7 MRRMIDN----GVWEKIAR-PKDMFVVGTEILYERKVSKNGKVEEYKRRLVAQDFRQIEGVHCTEKYSPTPATASIRTLLATAAAKDGELPHFDAEQAFLKADI---VYIEIPERFQHFLGAVGKLNKAICELVQAGRC*NIKFCDDIAAIRFELSRADPCMFSKVVNGEVEMVVVVHVDKIL 531
M++ ID G + K+ P+ +G++ ++ K ++ G + ++K R+VA+ F QI G+ S P+ ASI+T++A A K +L H+D +QA++ A + +Y+ PE G V K+ +A+ L Q GR + D + +E R DPC+F KVV+GEV ++V++VD IL
Sbjct: 519 MKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIL 701
BLAST of mRNA_H-paniculata_contig1557.3248.1 vs. uniprot
Match: A0A6H5JI89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI89_9PHAE) HSP 1 Score: 100 bits (249), Expect = 2.310e-21 Identity = 58/172 (33.72%), Postives = 99/172 (57.56%), Query Frame = 1
Query: 28 GVWEKIAR-PKDMFVVGTEILYERKVSKNGKVEEYKRRLVAQDFRQIEGVHCTEKYSPTPATASIRTLLATAAAKDGELPHFDAEQAFLKADI---VYIEIPERFQHFLGAVGKLNKAICELVQAGRC*NIKFCDDIAAIRFELSRADPCMFSKVVNGEVEMVVVVHVDKIL 531
G + K+ P+ +G++ ++ K ++ G + ++K R+VA+ F QI G+ S P+ ASI+T++A A K +L H+D +QA++ A + +Y+ PE G V K+ +A+ L Q+GR + D + +E R DPC+F KVV+GEV ++V++VD IL
Sbjct: 557 GTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDNIL 728
BLAST of mRNA_H-paniculata_contig1557.3248.1 vs. uniprot
Match: A0A6H5JK49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK49_9PHAE) HSP 1 Score: 100 bits (248), Expect = 2.820e-21 Identity = 61/183 (33.33%), Postives = 104/183 (56.83%), Query Frame = 1
Query: 7 MRRMIDN----GVWEKIAR-PKDMFVVGTEILYERKVSKNGKVEEYKRRLVAQDFRQIEGVHCTEKYSPTPATASIRTLLATAAAKDGELPHFDAEQAFLKADI---VYIEIPERFQHFLGAVGKLNKAICELVQAGRC*NIKFCDDIAAIRFELSRADPCMFSKVVNGEVEMVVVVHVDKIL 531
M++ ID G + K+ P+ +G++ ++ K + G + ++K R+VA+ F QI G+ S P+ ASI+T++A A K +L H+D +QA++ A + +Y+ +PE G V K+ +A+ L Q+GR + D + E R DPC+F KVV+GEV ++V++VD+IL
Sbjct: 302 MKKEIDGHDKTGTFTKVKELPEGREAIGSKWVFSSKTNGKGLIVDFKARMVARGFSQIPGIDFHHSSSAFPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRLPEGCGSMSGKVVKVERALYGLKQSGREWGFEVADALIENGCEQCRVDPCVFRKVVDGEVVGLIVIYVDEIL 484
BLAST of mRNA_H-paniculata_contig1557.3248.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE) HSP 1 Score: 100 bits (248), Expect = 2.960e-21 Identity = 60/183 (32.79%), Postives = 104/183 (56.83%), Query Frame = 1
Query: 7 MRRMIDN----GVWEKIAR-PKDMFVVGTEILYERKVSKNGKVEEYKRRLVAQDFRQIEGVHCTEKYSPTPATASIRTLLATAAAKDGELPHFDAEQAFLKADI---VYIEIPERFQHFLGAVGKLNKAICELVQAGRC*NIKFCDDIAAIRFELSRADPCMFSKVVNGEVEMVVVVHVDKIL 531
M++ ID G + K+ P+ +G++ ++ K ++ G + ++K R+VA+ F QI G+ S P+ ASI+T++A A K +L H+D +QA++ A + +Y+ PE G V K+ +A+ L Q+GR + D + +E R DPC+F KVV+GEV ++V++VD I+
Sbjct: 232 MKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDII 414
BLAST of mRNA_H-paniculata_contig1557.3248.1 vs. uniprot
Match: A0A6H5JGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK7_9PHAE) HSP 1 Score: 100 bits (248), Expect = 3.090e-21 Identity = 60/183 (32.79%), Postives = 104/183 (56.83%), Query Frame = 1
Query: 7 MRRMIDN----GVWEKIAR-PKDMFVVGTEILYERKVSKNGKVEEYKRRLVAQDFRQIEGVHCTEKYSPTPATASIRTLLATAAAKDGELPHFDAEQAFLKADI---VYIEIPERFQHFLGAVGKLNKAICELVQAGRC*NIKFCDDIAAIRFELSRADPCMFSKVVNGEVEMVVVVHVDKIL 531
M++ ID G + K+ P+ +G++ ++ K ++ G + ++K R+VA+ F QI G+ S P+ ASI+T++A A K +L H+D +QA++ A + +Y+ PE G V K+ +A+ L Q+G + D + R+E R DPC+F KV++GEV ++V++VD IL
Sbjct: 667 MKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLGHWDVKQAYIHAKLKEEIYLRFPEGCDSMSGKVVKVERALYGLKQSGPEWGFEAADALIENRYEQCRVDPCVFRKVLDGEVVGLIVIYVDDIL 849 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1557.3248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1557.3248.1 >prot_H-paniculata_contig1557.3248.1 ID=prot_H-paniculata_contig1557.3248.1|Name=mRNA_H-paniculata_contig1557.3248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp MRRMIDNGVWEKIARPKDMFVVGTEILYERKVSKNGKVEEYKRRLVAQDFback to top mRNA from alignment at H-paniculata_contig1557:2429..2959- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1557.3248.1 ID=mRNA_H-paniculata_contig1557.3248.1|Name=mRNA_H-paniculata_contig1557.3248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=531bp|location=Sequence derived from alignment at H-paniculata_contig1557:2429..2959- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1557:2429..2959- >mRNA_H-paniculata_contig1557.3248.1 ID=mRNA_H-paniculata_contig1557.3248.1|Name=mRNA_H-paniculata_contig1557.3248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig1557:2429..2959- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |