mRNA_H-paniculata_contig15561.3246.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15561.3246.1
Unique NamemRNA_H-paniculata_contig15561.3246.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15561.3246.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 243 bits (620), Expect = 1.800e-75
Identity = 126/242 (52.07%), Postives = 157/242 (64.88%), Query Frame = 1
Query:    1 PSLSFHHKKNRVDFALDHMSRDRRTFKTGNNTIHVDESWFYLIRDKEKVRMFPGEEKVGSIKVPHKSHIPKLMFICAVSRPDPAHDFDGKIGIWRVCVIKEAQRT-------TARRARG----------------EEYEVDVTIDAECYQSWYLEDLLSAVKSKMWWLEGEDAIVQQDGGTPHTGKDTPKTLNRAGREGG*CIKLVTQPAQSPDFNINDLGFFASPKSRVCGERFGTVDALV 657
            PSLS   K++R+DF  D +      +    N +H+DESWFYL+R+KEKVR+F GE+  G  +VPH+SH+PK+M I A +RPDPAHDFDGKIGIWR+CVI+ AQR+       TA   R                 EEYE D TIDAE Y+ WY++ LL A+K KM WL  +  +VQQDG +PHTGK  P+ LN AG   G  ++LVTQPAQSPD NINDLG FAS K RV G    ++D LV
Sbjct:  123 PSLSDAQKRHRMDFISDRVDEPIGEYLDQGNVVHLDESWFYLMREKEKVRVFSGEDVPGPPRVPHESHLPKIMVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364          
BLAST of mRNA_H-paniculata_contig15561.3246.1 vs. uniprot
Match: A0A6A4Z9D8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z9D8_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.360e-37
Identity = 89/284 (31.34%), Postives = 152/284 (53.52%), Query Frame = 1
Query:    1 PSLSFHHKKNRVDFALDHM---SRDRRTFKTGNNTIHVDESWFYLIRDKEKVRMFPGEEKVGSIKVPHKSHIPKLMFICAVSRP--DPAHD--FDGKIGIWRVCVIKEAQRTTARRARGEEYEVDVTIDAECYQSWYLEDLLSAVKSKMWWLEGEDAIVQQDGGTPHTGKDTPKTLNRAGREGG*CIKLVTQPAQSPDFNINDLGFFASPKSRVCGERFGTVDALVEGVKSMYNAYDAETLERVWQSLFKRYNQVLKAKGEDDFEVGHTGTNKRQREGRLAKRV 831
            P L+  HK +R+ F   H+   +  +R +    +T+H+DE WFY+ +   +  ++  +E V + K   K HI K+MF+ AV+RP  D  +   +DG+IG+W     + A R++  R RG++     T+  + Y+S+ ++ ++ AV+SK    +     +QQD   PH   + P  +  AGR+GG  I L +QPAQSPD N+ DLG+F + +S        T+D LV  V   +   +   L++ + +L K    + K  G++DF++ H   +   +EG L  R+
Sbjct:   10 PMLTDKHKSDRMAFVQRHLRTGASGKRYWHDMLDTVHIDEKWFYVTKQNRRYYLW-SDEAVPTRKCRSKKHITKVMFLTAVARPRYDARNKRMWDGRIGMWPFVKTRPALRSSKNRKRGDDVTEPFTVTRDVYRSFLIDKVIPAVRSKWPSSKKNQIWIQQDNAKPHVSVNDPAVV-AAGRQGGWTISLCSQPAQSPDLNVLDLGYFNAIQSLQHQMATYTLDDLVVAVVKSFEELECTVLDKTFMTLQKVMECIFKMGGDNDFKLPHQKKHGLVKEGPLPTRL 291          
BLAST of mRNA_H-paniculata_contig15561.3246.1 vs. uniprot
Match: UPI001C2659A6 (uncharacterized protein LOC121754350 n=3 Tax=Salvia splendens TaxID=180675 RepID=UPI001C2659A6)

HSP 1 Score: 143 bits (361), Expect = 3.020e-36
Identity = 99/293 (33.79%), Postives = 150/293 (51.19%), Query Frame = 1
Query:    1 PSLSFHHKKNRVDFALDHMSRDRRT----FKTGNNTIHVDESWFYLIRDKEKVRMFPGEEKVGSIKVPH-----KSHIPKLMFICAVSRPDPAHD----FDGKIGIWRVCVIKEAQRTTARRARGE-EYEVDVTIDAECYQSWYLEDLLSAVKSKMWWLEGEDAIV--QQDGGTPHTGKDTPKTLNRAGREGG*CIKLVTQPAQSPDFNINDLGFFASPKSRVCGERFGTVDALVEGVKSMYNAYDAETLERVWQSLFKRYNQVLKAKGEDDFEVGHTGTNKRQREGRLAKRV 831
            P+L+  H   R+ F L  +  DR      F+  +NTIH+DE WFY+ +  ++  + PGE +      PH     K  I K+MF+CAVSRP    +    FDGKIGI+       AQRT+  R  G  E +   +I  E  +   +  ++ A+  K  W EG    +  QQD   PH  KDT      A ++ G  + LV QP  SPD N+NDLG+F + +S        T+D L++ V+  ++    +TL+ V+ SL     ++LK KG++ ++V H G N  +R  +L K +
Sbjct:  128 PNLTADHMLLRLRFTLQSLELDRILNRIMFRNMDNTIHIDEKWFYITQGSQRFYLAPGEAE------PHRTCKNKKFISKIMFMCAVSRPLFGQNGEVLFDGKIGIFPFTKQVAAQRTSKNRVAGTMETKPIESITKEVTKQCLINKIIPAIFEK--WPEGASKRIRIQQDNAKPHI-KDTDPDFKVAAQQHGFSMSLVQQPPCSPDTNVNDLGWFRAIQSLQVQTACKTIDDLIKAVEKSFHDLSPQTLDNVFLSLQSCMVEILKVKGQNSYKVPHLGKNNLRRNAQLPKNL 411          
BLAST of mRNA_H-paniculata_contig15561.3246.1 vs. uniprot
Match: I6THG9_PSEMU (Tranposase n=1 Tax=Pseudo-nitzschia multiseries TaxID=37319 RepID=I6THG9_PSEMU)

HSP 1 Score: 143 bits (361), Expect = 6.930e-36
Identity = 97/280 (34.64%), Postives = 145/280 (51.79%), Query Frame = 1
Query:    1 PSLSFHHKKNRVDFALDHMSRDRRTFKTGNNTIHVDESWFYLIRDKEKVRMFPGEEKVGSIKVPHKSHIPKLMFICAVSRP----DPAHDFDGKIGIWRVCVIKEAQRTTARRARGEEYEVDV-TIDAECYQSWYLEDLLSAVKSK--MWWLEGEDAIVQQDGGTPHTGKDTPKTLNRAGREGG*CIKLVTQPAQSPDFNINDLGFFASPKSRVCGERFGTVDALVEGVKSMYNAYDAETLERVWQSLFKRYNQVLKAKGEDDFEVGHTGTNKRQREGRL 819
            P L+  +KK RV+FAL  +  D + F+   +TIH+DE WFYL    +K  +  GE +  S     K  I K+MF+CAV+RP    D    FDGKIGIW   V + AQR +  R RG     ++ +++A  YQ   LE +L A++ K  + W +     +Q+D   PH  +     +  A RE G  I + TQP  SPDFN+ DLGFFAS ++    +R   +D L+  V+          L  ++ SL     + +K +G + +++ H G  K  +E  L
Sbjct:  202 PFLTEKNKKARVEFALSLIKPDGK-FEDMYDTIHIDEKWFYLKTTNQKTYLCSGEPEPHST-CKSKRFIEKVMFLCAVARPRHDADRNAGFDGKIGIWPFVVKEPAQRNSVNRPRGTMVTKNIPSVNAAEYQKMMLEKVLPAIQEKFPVCW-KSRPIFIQEDNAKPHHLRSRA-AVREAAREAGWNITVTTQPPNSPDFNVLDLGFFASIQALQYKKRAKNIDQLIANVEEALVETSTIALNSIFLSLQCALEESIKVQGNNSYKLRHMGKEKLLKEDNL 477          
BLAST of mRNA_H-paniculata_contig15561.3246.1 vs. uniprot
Match: A0A448ZNT1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNT1_9STRA)

HSP 1 Score: 143 bits (360), Expect = 1.470e-35
Identity = 94/280 (33.57%), Postives = 140/280 (50.00%), Query Frame = 1
Query:    1 PSLSFHHKKNRVDFALDHMSRDRRTFKTGNNTIHVDESWFYLIRDKEKVRMFPGEEKVGSIKVPHKSHIPKLMFICAVSRP----DPAHDFDGKIGIWRVCVIKEAQRTTARRARGEEYEVDVTIDAECYQSWYLEDLLSAVKSKMWWLEGE---DAIVQQDGGTPHTGKDTPKTLNRAGREGG*CIKLVTQPAQSPDFNINDLGFFASPKSRVCGERFGTVDALVEGVKSMYNAYDAETLERVWQSLFKRYNQVLKAKGEDDFEVGHTGTNKRQREGRL 819
            P L+  +K  RV++ L+H+  D   F      IH+DE WFYL R K+   + PGE +  S     K+H+ K+MF+CA +RP    +    FDGKIGIW   V + A+R++  R +G        +D E Y+   LE +L A+  K  W  G    +  +Q+D   PH      + +  A    G  I + TQP  SPD N+ DLGFF S +S    +R   +D L+  V+  ++    ETL  V+ SL       L   G++++++ H G     REG L
Sbjct:  235 PLLTAKNKLKRVEWILEHID-DNGRFDDWFKWIHIDEKWFYLKRTKQTTYLLPGEAEPKSTSK-SKNHMTKVMFLCATARPRWDTNNCAWFDGKIGIWPFVVKEPAKRSSVNRPKGTLVTKPQNVDGEVYKRMLLEKVLPAIYEK--WPRGSSTPEIFIQEDNAKPHKAT-IREEVKAAAASKGWNITVKTQPPNSPDMNVLDLGFFNSIQSLQYKKRSKDIDHLIANVEEAFDECKRETLNNVFLSLQACMEASLGVDGDNNYKLPHMGKASLMREGTL 509          
BLAST of mRNA_H-paniculata_contig15561.3246.1 vs. uniprot
Match: A0A6A5AA16_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AA16_9STRA)

HSP 1 Score: 141 bits (355), Expect = 2.820e-35
Identity = 84/268 (31.34%), Postives = 145/268 (54.10%), Query Frame = 1
Query:    1 PSLSFHHKKNRVDFALDHMS---RDRRTFKTGNNTIHVDESWFYLIRDKEKVRMFPGEEKVGSIKVPHKSHIPKLMFICAVSRP--DPAHD--FDGKIGIWRVCVIKEAQRTTARRARGEEYEVDVTIDAECYQSWYLEDLLSAVKSKMWWLEGEDAIVQQDGGTPHTGKDTPKTLNRAGREGG*CIKLVTQPAQSPDFNINDLGFFASPKSRVCGERFGTVDALVEGVKSMYNAYDAETLERVWQSLFKRYNQVLKAKGEDDFEVGH 783
            P L+  H+  R +FA   +    + RR +    + +H+DE WFY+ +   +  ++  +E     K   K HI K+MF+CAV+RP  D AH   +DGK+G+W     + A+R +  R RG    V +T+    Y+ + ++ ++ A++++     G    VQQD   PH   D P+ L  AGR+ G  I+L+ QPAQSPDFN+ DLGFF + +S        T+D L++ V+  +       L++ + +L K   + +++ G++ +++ H
Sbjct:  135 PMLTPQHRVARYNFAKSFIRDGYQGRRQWHDMLDCVHIDEKWFYITQVNRRFYLW-HDEPTPQRKAQSKRHITKVMFLCAVARPRHDSAHRKMWDGKVGLWPFVETQLAKRRSKNRDRGTPVTVPMTVTKPVYRRFLVDKVIPAIQAQWPGRRGATIYVQQDNAKPHVAVDDPEVL-AAGRKEGWNIQLMAQPAQSPDFNVLDLGFFNAIQSLQHQTTARTIDDLIKCVEDAFENLAWRVLDKTFMTLQKVMEEAMRSSGDNVYKLPH 400          
BLAST of mRNA_H-paniculata_contig15561.3246.1 vs. uniprot
Match: A0A6A4ECW5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4ECW5_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.530e-34
Identity = 98/288 (34.03%), Postives = 149/288 (51.74%), Query Frame = 1
Query:    1 PSLSFHHKKNRVDFALDHMSR--DRRTFKTGNNTIHVDESWFYLIRDKEKVRMFPGEEKVGSIKVPH-----KSHIPKLMFICAVSRPDPAHD----FDGKIGIWRVCVIKEAQRTTARRARG--EEYEVDVTIDAECYQSWYLEDLLSAVKSKMW--WLEGEDAIVQQDGGTPHTGKDTPKTLNRAGREGG*CIKLVTQPAQSPDFNINDLGFFASPKSRVCGERFGTVDALVEGVKSMYNAYDAETLERVWQSLFKRYNQVLKAKGEDDFEVGHTGTNKRQREGRL 819
            P L+  +K  R+  A+ H+    +   F    N +HVDE WF   +DK+   + PGE       VPH     K  I K MF+ AV+RP   ++    FDGKIGIW      +AQ ++  R  G  E   +D T++ E Y+ + LE ++ A+KSK W  W +    ++QQD  TPH     P  L  AG   G  I+L  QPA SPD N  DLG+FAS ++    E    +  L++ ++  Y A +   L+ +  +L      V++A G +++++ H G +K +REG+L
Sbjct:  161 PLLTLANKHARIRHAIRHVMHGPNGSYFVPMYNVVHVDEKWFNEDKDKKVFYLLPGET------VPHRERKSKRFIGKTMFLAAVARPRFDNNGQVLFDGKIGIWDFTHKVDAQHSSKNRPAGTLETKNLD-TVNREVYKRYLLEHIIPAIKSK-WPVWDKSSPIVIQQDNATPHCQPTDPDIL-AAGVADGWNIRLAFQPANSPDLNTLDLGYFASIQALPYREDCCDIVQLIQAIRKSYAALEVYKLDNITLTLQSSMECVMRAAGSNEYKLPHAGKSKIRREGKL 439          
BLAST of mRNA_H-paniculata_contig15561.3246.1 vs. uniprot
Match: A0A0W8C4B7_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8C4B7_PHYNI)

HSP 1 Score: 135 bits (340), Expect = 5.130e-34
Identity = 95/289 (32.87%), Postives = 144/289 (49.83%), Query Frame = 1
Query:    1 PSLSFHHKKNRVDFALDHM--SRDRR-TFKTGNNTIHVDESWFYLIRDKEKVRMFPGEEKVGSIKVP-----HKSHIPKLMFICAVSRPDPAHDFDGKIGIWRVCVIKEAQRTTARRARGEEYEVDVTIDAECYQSWYLEDLLSAVKSKMWWLEGEDA--------IVQQDGGTPHTGKDTPKTLNRAGREGG*CIKLVTQPAQSPDFNINDLGFFASPKSRVCGERFGTVDALVEGVKSMYNAYDAETLERVWQSLFKRYNQVLKAKGEDDFEVGHTGTNKRQREGRL 819
            P L+  HK +R+ + L H+  S DR+  F    +T+HVDE WFY+ +  +KV +  G++       P      K HI K+MF+CAV+RP    ++DGK+G+W V      QR +  R  G E    +++  E Y+   LED++ A+K+K  W+  E           VQQD   PH   D P+ L  AG  GG  I    QPAQSPD N+ D GFF + +S        T + L+  V+  + +    TL + + S+      +++  G + F + H   +K  R G L
Sbjct:   20 PLLTEKHKTDRLKWCLLHVTQSTDRQPVFAPMYDTVHVDEKWFYVKKIGQKVYLLTGQDGTPCEDAPVQFVQSKRHILKVMFLCAVARP--RGNWDGKVGMWPVVEKYVTQRRSVNRDAGVEELRPISMTREVYRRMLLEDVIPAIKAKWEWVRDEGLGVPLVSPIWVQQDNAKPHVLPDDPEVLV-AGCAGGWSILFRNQPAQSPDLNVLDCGFFNAIQSLQSVTVPRTAEDLISEVERAFASTTTTTLNKTFLSVQLIMQSIMRHNGGNAFGLSHIQKDKLLRAGEL 305          
BLAST of mRNA_H-paniculata_contig15561.3246.1 vs. uniprot
Match: A0A6G0X8U9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8U9_9STRA)

HSP 1 Score: 138 bits (347), Expect = 6.340e-34
Identity = 85/248 (34.27%), Postives = 133/248 (53.63%), Query Frame = 1
Query:   97 IHVDESWFYLIRDKEKVRMFPGEEKVGSIKVPHKSHIPKLMFICAVSRPDPAHD----FDGKIGIWRVCVIKEAQRTTARRARGEEYEVDVTIDAECYQSWYLEDLLSAVKSKM---WWLEGEDAIVQQDGGTPHTGKDTPKTLNRAGREGG*CIKLVTQPAQSPDFNINDLGFFASPKSRVCGERFGTVDALVEGVKSMYNAYDAETLERVWQSLFKRYNQVLKAKGEDDFEVGHTGTNKRQREGRL 819
            IH+DE WF+L +DK    +  GEE + S    HKSHIPKLMF+ AV RP   H     FDGK+GI+   +   A+R++  +A+G    +  T+  + Y    +  +L A+ +K    W    +   +QQDG  PH     P+ +  A    G  IKLVTQPA SPD NI DLGFFA+ ++    +   T+D  ++ V   ++   ++ L+ VW SL +R   ++   G++  ++ H      +++G+L
Sbjct:  153 IHLDEKWFFLDKDKRTFYLVKGEE-LPSRTARHKSHIPKLMFLTAVGRPQYDHGTSQYFDGKLGIFPFVIHGTAKRSSRHQAKGAPVLIPQTVTRDIYVDALVNHVLPAILTKFPSRW----KTLYIQQDGARPHCTDGCPELVASAASF-GLNIKLVTQPANSPDLNILDLGFFAAIQTLQYRKCPKTIDEFLDAVHESFHELKSDCLDSVWLSLHRRMATIIDHYGDNTMKLEHMRKEALRKQGKL 394          
BLAST of mRNA_H-paniculata_contig15561.3246.1 vs. uniprot
Match: UPI002008F034 (uncharacterized protein LOC125206616 n=4 Tax=Salvia TaxID=21880 RepID=UPI002008F034)

HSP 1 Score: 137 bits (344), Expect = 9.140e-34
Identity = 93/279 (33.33%), Postives = 146/279 (52.33%), Query Frame = 1
Query:    1 PSLSFHHKKNRVDFALDHM----SRDRRTFKTGNNTIHVDESWFYLIRDKEKVRMFPGE-EKVGSIKVPHKSHIPKLMFICAVSRP----DPAHDFDGKIGIWRVCVIKEAQRTTARRARGE-EYEVDVTIDAECYQSWYLEDLLSAVKSKMWWLEGEDAIVQQDGGTPHTGKDTPKTLNRAGREGG*CIKLVTQPAQSPDFNINDLGFFASPKSRVCGERFGTVDALVEGVKSMYNAYDAETLERVWQSLFKRYNQVLKAKGEDDFEVGHTGTNKRQR 807
            PSL+  +K  RV ++L  +    ++ R  +++ +N +H+DE WFY+ +  ++  + P E E   S K   K +I K+MF+CAVSRP    D    +DGK+GI+    +  AQR +  R RG  E +   ++  E  +   +  ++ A+K+K      +D  +QQD  TPH     P     A    G  I+L+ QPA SPD NI DLGFF + +S    +   TVD LV  V S +     +TL RV+ SL     ++L  +G + ++V H   ++ QR
Sbjct:  133 PSLTNINKLARVRWSLSQLQPQITQGRVQYQSMHNVVHIDEKWFYMTKASDRYYLLPDEDEPYRSCK--SKRYITKVMFMCAVSRPHFGMDGQATYDGKVGIFPFTEVLPAQRKSKNRPRGTMETKAIHSVTKEVMRDCLINKIIPAIKAKWPVWASKDIYIQQDNATPHITAMDPD-FQAAANSDGFKIQLICQPANSPDTNILDLGFFRAIQSLQYEKPCKTVDELVGNVCSSFAELSPQTLNRVFLSLQACLTEILLCRGGNGYKVPHINKDRLQR 408          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15561.3246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE1.800e-7552.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A4Z9D8_9STRA1.360e-3731.34Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
UPI001C2659A63.020e-3633.79uncharacterized protein LOC121754350 n=3 Tax=Salvi... [more]
I6THG9_PSEMU6.930e-3634.64Tranposase n=1 Tax=Pseudo-nitzschia multiseries Ta... [more]
A0A448ZNT1_9STRA1.470e-3533.57Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A6A5AA16_9STRA2.820e-3531.34Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A6A4ECW5_9STRA1.530e-3434.03Uncharacterized protein n=3 Tax=Phytophthora rubi ... [more]
A0A0W8C4B7_PHYNI5.130e-3432.87Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
A0A6G0X8U9_9STRA6.340e-3434.27Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
UPI002008F0349.140e-3433.33uncharacterized protein LOC125206616 n=4 Tax=Salvi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15561contigH-paniculata_contig15561:593..1423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue5e-15
Seed eggNOG ortholog67593.Physo140597
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMKC@1,2QQNW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size831
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15561.3246.1prot_H-paniculata_contig15561.3246.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15561 890..1369 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929244.983443-UTR-H-paniculata_contig15561:592..8891622929244.983443-UTR-H-paniculata_contig15561:592..889Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15561 593..889 -
1691480785.1287823-UTR-H-paniculata_contig15561:592..8891691480785.1287823-UTR-H-paniculata_contig15561:592..889Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15561 593..889 -
1622929245.0135863-UTR-H-paniculata_contig15561:1369..14231622929245.0135863-UTR-H-paniculata_contig15561:1369..1423Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15561 1370..1423 -
1691480785.1461518-UTR-H-paniculata_contig15561:1369..14231691480785.1461518-UTR-H-paniculata_contig15561:1369..1423Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15561 1370..1423 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929245.0012105-CDS-H-paniculata_contig15561:889..13691622929245.0012105-CDS-H-paniculata_contig15561:889..1369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15561 890..1369 -
1691480785.1386304-CDS-H-paniculata_contig15561:889..13691691480785.1386304-CDS-H-paniculata_contig15561:889..1369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15561 890..1369 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15561.3246.1

>prot_H-paniculata_contig15561.3246.1 ID=prot_H-paniculata_contig15561.3246.1|Name=mRNA_H-paniculata_contig15561.3246.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=160bp
MSRDRRTFKTGNNTIHVDESWFYLIRDKEKVRMFPGEEKVGSIKVPHKSH
IPKLMFICAVSRPDPAHDFDGKIGIWRVCVIKEAQRTTARRARGEEYEVD
VTIDAECYQSWYLEDLLSAVKSKMWWLEGEDAIVQQDGGTPHTGKDTPKT
LNRAGREGG*
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mRNA from alignment at H-paniculata_contig15561:593..1423-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15561.3246.1 ID=mRNA_H-paniculata_contig15561.3246.1|Name=mRNA_H-paniculata_contig15561.3246.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=831bp|location=Sequence derived from alignment at H-paniculata_contig15561:593..1423- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTTCGCTTTCTTTCCATCACAAGAAGAATCGCGTTGACTTCGCACTCGA CCACATGTCCCGCGATCGCAGAACGTTCAAGACAGGCAACAACACGATTC ACGTCGACGAGTCGTGGTTCTACCTGATCCGTGATAAGGAAAAGGTGCGT ATGTTCCCAGGGGAAGAAAAAGTGGGCTCGATCAAGGTGCCTCACAAGAG TCACATTCCCAAACTGATGTTCATCTGTGCTGTTTCACGCCCCGATCCTG CACACGACTTCGACGGAAAGATCGGAATCTGGCGTGTCTGCGTCATCAAG GAGGCACAAAGGACTACCGCGCGGCGCGCCAGGGGCGAGGAGTACGAGGT GGATGTCACTATCGACGCCGAATGTTACCAGAGTTGGTACCTCGAAGATT TGTTATCGGCCGTGAAGAGCAAGATGTGGTGGTTGGAGGGCGAAGATGCC ATTGTGCAGCAGGACGGAGGGACACCGCACACGGGCAAGGACACGCCGAA GACGCTGAACAGAGCGGGGAGGGAGGGGGGGTGATGCATAAAGCTCGTGA CGCAGCCAGCGCAGTCGCCAGATTTCAACATCAACGATTTGGGTTTTTTT GCGTCTCCAAAGAGTAGAGTATGTGGGGAGCGTTTTGGCACGGTCGATGC CCTCGTAGAGGGAGTAAAGAGCATGTACAACGCGTACGATGCAGAGACGC TAGAGCGAGTATGGCAGAGTCTGTTTAAGAGGTACAATCAGGTTCTGAAA GCCAAGGGAGAGGACGATTTTGAGGTAGGGCACACAGGCACAAACAAAAG GCAGCGGGAGGGGAGGTTGGCAAAACGCGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig15561:593..1423-

>mRNA_H-paniculata_contig15561.3246.1 ID=mRNA_H-paniculata_contig15561.3246.1|Name=mRNA_H-paniculata_contig15561.3246.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=960bp|location=Sequence derived from alignment at H-paniculata_contig15561:593..1423- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCCGCGATCGCAGAACGTTCAAGACAGGCAACAACACGATTCACGT
CGACGAGTCGTGGTTCTACCTGATCCGTGATAAGGAAAAGGTGCGTATGT
TCCCAGGGGAAGAAAAAGTGGGCTCGATCAAGGTGCCTCACAAGAGTCAC
ATTCCCAAACTGATGTTCATCTGTGCTGTTTCACGCCCCGATCCTGCACA
CGACTTCGACGGAAAGATCGGAATCTGGCGTGTCTGCGTCATCAAGGAGG
CACAAAGGACTACCGCGCGGCGCGCCAGGGGCGAGGAGTACGAGGTGGAT
GTCACTATCGACGCCGAATGTTACCAGAGTTGGTACCTCGAAGATTTGTT
ATCGGCCGTGAAGAGCAAGATGTGGTGGTTGGAGGGCGAAGATGCCATTG
TGCAGCAGGACGGAGGGACACCGCACACGGGCAAGGACACGCCGAAGACG
CTGAACAGAGCGGGGAGGGAGGGGGGGTGAATGTCCCGCGATCGCAGAAC
GTTCAAGACAGGCAACAACACGATTCACGTCGACGAGTCGTGGTTCTACC
TGATCCGTGATAAGGAAAAGGTGCGTATGTTCCCAGGGGAAGAAAAAGTG
GGCTCGATCAAGGTGCCTCACAAGAGTCACATTCCCAAACTGATGTTCAT
CTGTGCTGTTTCACGCCCCGATCCTGCACACGACTTCGACGGAAAGATCG
GAATCTGGCGTGTCTGCGTCATCAAGGAGGCACAAAGGACTACCGCGCGG
CGCGCCAGGGGCGAGGAGTACGAGGTGGATGTCACTATCGACGCCGAATG
TTACCAGAGTTGGTACCTCGAAGATTTGTTATCGGCCGTGAAGAGCAAGA
TGTGGTGGTTGGAGGGCGAAGATGCCATTGTGCAGCAGGACGGAGGGACA
CCGCACACGGGCAAGGACACGCCGAAGACGCTGAACAGAGCGGGGAGGGA
GGGGGGGTGA
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