mRNA_H-paniculata_contig15559.3244.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15559.3244.1
Unique NamemRNA_H-paniculata_contig15559.3244.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15559.3244.1 vs. uniprot
Match: A0A2N9GS71_FAGSY (Uncharacterized protein n=3 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GS71_FAGSY)

HSP 1 Score: 140 bits (353), Expect = 3.950e-38
Identity = 71/160 (44.38%), Postives = 98/160 (61.25%), Query Frame = 1
Query:    1 RRMEDPSREDFRTCKHFFRYLSTVPDLGITLGGKSNGHGLEGFVDADWAGDIEDRKSTTGYVFKLKGGAISWCFRKQQLVTWSSTEAEYVAAGEAGKEAVYQKDLLGSIGFGCRGSTTWLENKSAINLSKGSGAHCRTKHIGVRWHRIREWIREGILALK 480
            R M +P RE +   K  FRYL    + GI    +   + + G+VDAD+AG+++DR+STTGYVF L GG I W    Q +V  S+TEAEY+A  EA KEA++ K L+  +G    G     +++SAI L+K    H RTKHI VR+H+IRE I  G + L+
Sbjct:   92 RYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQPGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLNQGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLE 251          
BLAST of mRNA_H-paniculata_contig15559.3244.1 vs. uniprot
Match: UPI0006A737CF (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A737CF)

HSP 1 Score: 140 bits (354), Expect = 1.100e-37
Identity = 74/161 (45.96%), Postives = 101/161 (62.73%), Query Frame = 1
Query:    1 RRMEDPSREDFRTCKHFFRYLSTVPDLGITL--GGKSNGHGLEGFVDADWAGDIEDRKSTTGYVFKLKGGAISWCFRKQQLVTWSSTEAEYVAAGEAGKEAVYQKDLLGSIGFGCR-GSTTWLENKSAINLSKGSGAHCRTKHIGVRWHRIREWIREGILA 474
            R ME+P  E     KH  RY+      GI    GG+     L G+VD+D+AGD +DRKST+G+ F   GGA+SW  +KQ +VT S+TEAEYVAA     +AV+ +++L  IGFG   G+  + +N SAI LSK    H R+KHI VR+H +RE + EGI++
Sbjct:  150 RYMENPREEHMMAVKHIMRYVKGTAGFGIQYLCGGEEK---LVGYVDSDYAGDEDDRKSTSGFTFMFGGGAVSWSSKKQPIVTLSTTEAEYVAAANGACQAVWMRNMLTEIGFGQGDGTVLFCDNSSAIKLSKNLVLHGRSKHIHVRFHFLRELVNEGIIS 307          
BLAST of mRNA_H-paniculata_contig15559.3244.1 vs. uniprot
Match: A0A0L9VUJ5_PHAAN (Uncharacterized protein n=1 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9VUJ5_PHAAN)

HSP 1 Score: 135 bits (340), Expect = 7.720e-37
Identity = 64/158 (40.51%), Postives = 101/158 (63.92%), Query Frame = 1
Query:    7 MEDPSREDFRTCKHFFRYLSTVPDLGITLGGKSNGHGLEGFVDADWAGDIEDRKSTTGYVFKLKGGAISWCFRKQQLVTWSSTEAEYVAAGEAGKEAVYQKDLLGSIGFGCRGSTTWLENKSAINLSKGSGAHCRTKHIGVRWHRIREWIREGILALK 480
            M +P  E +   K   RY+    D+ +  GG      + G+VD+D+AGD++ RKSTTGYVFKL GG +SW  + Q +V  S+TEAEY+AA +A KEA++ + LL  +G      T + +++SA+++++    H RTKHIGV++H +RE + +G + L+
Sbjct:   37 MANPGEEHWNAVKRVLRYIKGTSDVALCFGGSK--FIVRGYVDSDYAGDLDKRKSTTGYVFKLAGGVVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEELGHKQNKITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEKGDVDLE 192          
BLAST of mRNA_H-paniculata_contig15559.3244.1 vs. uniprot
Match: A0A427XXX1_9TREE (Uncharacterized protein n=2 Tax=Saitozyma podzolica TaxID=1890683 RepID=A0A427XXX1_9TREE)

HSP 1 Score: 134 bits (336), Expect = 8.330e-37
Identity = 66/134 (49.25%), Postives = 87/134 (64.93%), Query Frame = 1
Query:   79 LGITLGGKSNGHGLEGFVDADWAGDIEDRKSTTGYVFKLKGGAISWCFRKQQLVTWSSTEAEYVAAGEAGKEAVYQKDLLGSIGFGCRGSTT-WLENKSAINLSKGSGAHCRTKHIGVRWHRIREWIREGILAL 477
            +  TLGGK+    LEG+VDADW G  + R+STTG++F L G AI W  R+Q  V  S+ EAEYVA  EA +EAV+ K LL  +G   +  T  W +N+ AI L++  G H RTKHI +RWH IRE I +G++ L
Sbjct:    1 MRFTLGGKTAKAELEGWVDADWGGCHDTRRSTTGHIFMLGGSAIVWTSRRQATVASSTVEAEYVAVSEAAREAVWLKGLLDELGVTPKEPTPLWCDNQGAIRLARNPGTHRRTKHIAIRWHLIRELIEDGVVRL 134          
BLAST of mRNA_H-paniculata_contig15559.3244.1 vs. uniprot
Match: A0A6D2JBX5_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX5_9BRAS)

HSP 1 Score: 139 bits (349), Expect = 1.150e-36
Identity = 70/161 (43.48%), Postives = 103/161 (63.98%), Query Frame = 1
Query:    1 RRMEDPSREDFRTCKHFFRYLSTVPDLGITLGGKSNGHGLEGFVDADWAGDIEDRKSTTGYVFKLKGGAISWCFRKQQLVTWSSTEAEYVAAGEAGKEAVYQKDLLGSIGFGCR-GSTTWLENKSAINLSKGSGAHCRTKHIGVRWHRIREWIREGILALK 480
            R ME+P+ +     K   RY+      GI    +  G  L GFVD+D+AGD++DRKST+GYVF L GGA+SW  +KQ +VT S+TEAE+VAA     +A++ +++LG IG+    G+T + +N S I LSK    H R+KHI VR++ +R+ + E ++ LK
Sbjct:  182 RYMENPNEQHLLAAKRILRYVQGTCGFGIRYK-QGEGEKLVGFVDSDYAGDVDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVAAAYGACQAMWLRNILGEIGWAQEEGTTLFCDNSSTIKLSKNPVLHGRSKHIHVRYYFLRDLVNEEVILLK 341          
BLAST of mRNA_H-paniculata_contig15559.3244.1 vs. uniprot
Match: A0A2P5AAW9_PARAD (Uncharacterized protein (Fragment) n=1 Tax=Parasponia andersonii TaxID=3476 RepID=A0A2P5AAW9_PARAD)

HSP 1 Score: 135 bits (340), Expect = 1.240e-36
Identity = 68/160 (42.50%), Postives = 99/160 (61.88%), Query Frame = 1
Query:    1 RRMEDPSREDFRTCKHFFRYLSTVPDLGITLGGKSNGHGLEGFVDADWAGDIEDRKSTTGYVFKLKGGAISWCFRKQQLVTWSSTEAEYVAAGEAGKEAVYQKDLLGSIGFGCRGSTTWLENKSAINLSKGSGAHCRTKHIGVRWHRIREWIREGILALK 480
            R M +  ++ +   K   RYL    ++ +    K +  GL+G+VDAD AGD++ RKSTTGYVF L G A+ W  + Q++V  S+TEAEYVA  EA KE ++ +  L  +G     ST   +++SAI+L+K  G H RTKHI VR+H IR  + +G+L L+
Sbjct:   83 RYMSNLGKQHWEAVKWILRYLRGTSNMSLCF--KKSDMGLQGYVDADMAGDVDGRKSTTGYVFTLGGTAVGWVSKLQKIVALSTTEAEYVAVTEASKELIWLQSFLEELGQNYGKSTLHCDSQSAIHLAKNPGYHARTKHIQVRYHFIRSALEDGVLVLE 240          
BLAST of mRNA_H-paniculata_contig15559.3244.1 vs. uniprot
Match: H3G557_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G557_PHYRM)

HSP 1 Score: 134 bits (338), Expect = 1.590e-36
Identity = 66/148 (44.59%), Postives = 95/148 (64.19%), Query Frame = 1
Query:   40 CKHFFRYLSTVPDLGITLGGKSNGHGLEGFVDADWAGDIEDRKSTTGYVFKLKGGAISWCFRKQQLVTWSSTEAEYVAAGEAGKEAVYQKDLLGSIGFGCRGSTT-WLENKSAINLSKGSGAHCRTKHIGVRWHRIREWIREGILALK 480
             K   +YL T  DLG+   G + G  L G+ DA+WAGD++ R+STTGYVF L G AISW  ++Q  V  SSTEAEY+A   A +EAV+ + LL  +G  C G+TT + +N+  I L+K    H RTKHI +++H +RE + + ++ L+
Sbjct:   75 AKRILKYLKTTQDLGLVFNGGTKGE-LIGYADANWAGDLDSRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLE 221          
BLAST of mRNA_H-paniculata_contig15559.3244.1 vs. uniprot
Match: A0A2N9GLA7_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GLA7_FAGSY)

HSP 1 Score: 142 bits (358), Expect = 2.610e-36
Identity = 72/160 (45.00%), Postives = 98/160 (61.25%), Query Frame = 1
Query:    1 RRMEDPSREDFRTCKHFFRYLSTVPDLGITLGGKSNGHGLEGFVDADWAGDIEDRKSTTGYVFKLKGGAISWCFRKQQLVTWSSTEAEYVAAGEAGKEAVYQKDLLGSIGFGCRGSTTWLENKSAINLSKGSGAHCRTKHIGVRWHRIREWIREGILALK 480
            R M +P RE +   K  FRYL    + GI    +   + + G+VDAD+AGD++DR+STTGY+F L GG I W    Q +V  S+TEAEY+A  EA KEA++ K L+  +G    G     +++SAI L+K    H RTKHI VR+H+IRE I  G + LK
Sbjct:  580 RYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQPGTNSVIGYVDADYAGDVDDRRSTTGYLFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLNQSGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLK 739          
BLAST of mRNA_H-paniculata_contig15559.3244.1 vs. uniprot
Match: A0A1J3D358_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3D358_NOCCA)

HSP 1 Score: 140 bits (352), Expect = 2.660e-36
Identity = 74/159 (46.54%), Postives = 99/159 (62.26%), Query Frame = 1
Query:    7 MEDPSREDFRTCKHFFRYLSTVPDLGITLGGKSNGH-GLEGFVDADWAGDIEDRKSTTGYVFKLKGGAISWCFRKQQLVTWSSTEAEYVAAGEAGKEAVYQKDLLGSIGFGCR-GSTTWLENKSAINLSKGSGAHCRTKHIGVRWHRIREWIREGILAL 477
            M +P+     T K   RYL    D GI    +  G   L G+ D+D+AGDI+D KST+GYVF L GGA++W  RKQ +VT SSTEAEYVAA     +A++ K +LG IGF    G T + +N S I LSK +  H ++KHI VR+H +RE  +EG++ L
Sbjct:  298 MANPTELHLATAKRIMRYLKGTLDFGIWYRRERKGSLSLLGYTDSDYAGDIDDCKSTSGYVFLLSGGAVAWSSRKQPIVTLSSTEAEYVAAATCACQAIWMKRVLGEIGFEQEDGMTLFCDNTSTIKLSKNAVMHGKSKHIRVRYHFLRELSKEGLVTL 456          
BLAST of mRNA_H-paniculata_contig15559.3244.1 vs. uniprot
Match: A0A2N9HJ76_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HJ76_FAGSY)

HSP 1 Score: 142 bits (358), Expect = 3.010e-36
Identity = 72/160 (45.00%), Postives = 99/160 (61.88%), Query Frame = 1
Query:    1 RRMEDPSREDFRTCKHFFRYLSTVPDLGITLGGKSNGHGLEGFVDADWAGDIEDRKSTTGYVFKLKGGAISWCFRKQQLVTWSSTEAEYVAAGEAGKEAVYQKDLLGSIGFGCRGSTTWLENKSAINLSKGSGAHCRTKHIGVRWHRIREWIREGILALK 480
            R M +P RE +   K  FRYL    + GI    +S  + + G+VDAD+AG+++DR+STTGYVF L GG I W    Q +V  S+TEAEY+A  EA KEA++ K L+  +G    G     +++SAI L+K    H RTKHI VR+H+IRE I  G + L+
Sbjct:  787 RYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQSGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLNQGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLE 946          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15559.3244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N9GS71_FAGSY3.950e-3844.38Uncharacterized protein n=3 Tax=Fagus sylvatica Ta... [more]
UPI0006A737CF1.100e-3745.96uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A0L9VUJ5_PHAAN7.720e-3740.51Uncharacterized protein n=1 Tax=Phaseolus angulari... [more]
A0A427XXX1_9TREE8.330e-3749.25Uncharacterized protein n=2 Tax=Saitozyma podzolic... [more]
A0A6D2JBX5_9BRAS1.150e-3643.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P5AAW9_PARAD1.240e-3642.50Uncharacterized protein (Fragment) n=1 Tax=Paraspo... [more]
H3G557_PHYRM1.590e-3644.59Uncharacterized protein n=3 Tax=Phytophthora ramor... [more]
A0A2N9GLA7_FAGSY2.610e-3645.00Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A1J3D358_NOCCA2.660e-3646.54Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9HJ76_FAGSY3.010e-3645.00Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15559contigH-paniculata_contig15559:3953..4435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score129.8
Seed ortholog evalue1.1e-27
Seed eggNOG ortholog4081.Solyc11g062200.1.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,44UC5@71274,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Exons1
Model size483
Cds size477
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929244.773653-UTR-H-paniculata_contig15559:3952..39581622929244.773653-UTR-H-paniculata_contig15559:3952..3958Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15559 3953..3958 +
1691480785.0098093-UTR-H-paniculata_contig15559:3952..39581691480785.0098093-UTR-H-paniculata_contig15559:3952..3958Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15559 3953..3958 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929244.7870302-CDS-H-paniculata_contig15559:3958..44351622929244.7870302-CDS-H-paniculata_contig15559:3958..4435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15559 3959..4435 +
1691480785.020924-CDS-H-paniculata_contig15559:3958..44351691480785.020924-CDS-H-paniculata_contig15559:3958..4435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15559 3959..4435 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15559.3244.1prot_H-paniculata_contig15559.3244.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15559 3959..4435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15559.3244.1

>prot_H-paniculata_contig15559.3244.1 ID=prot_H-paniculata_contig15559.3244.1|Name=mRNA_H-paniculata_contig15559.3244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp
MEDPSREDFRTCKHFFRYLSTVPDLGITLGGKSNGHGLEGFVDADWAGDI
EDRKSTTGYVFKLKGGAISWCFRKQQLVTWSSTEAEYVAAGEAGKEAVYQ
KDLLGSIGFGCRGSTTWLENKSAINLSKGSGAHCRTKHIGVRWHRIREWI
REGILALK*
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mRNA from alignment at H-paniculata_contig15559:3953..4435+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15559.3244.1 ID=mRNA_H-paniculata_contig15559.3244.1|Name=mRNA_H-paniculata_contig15559.3244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=483bp|location=Sequence derived from alignment at H-paniculata_contig15559:3953..4435+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTCGTATGGAGGACCCATCTCGAGAAGACTTCCGTACATGCAAGCACTT TTTTCGTTATCTCAGTACTGTGCCTGACCTCGGCATTACGCTCGGCGGTA AGAGCAATGGTCACGGTCTTGAAGGATTCGTTGATGCCGACTGGGCGGGA GATATCGAGGACCGAAAGTCCACTACAGGATACGTATTCAAGCTAAAGGG CGGTGCGATAAGTTGGTGCTTCAGGAAGCAACAGTTAGTCACGTGGTCCA GTACAGAGGCAGAGTACGTTGCTGCAGGAGAAGCGGGGAAGGAGGCGGTA TATCAGAAGGATTTACTAGGATCGATAGGTTTCGGATGCAGGGGGAGCAC GACATGGCTTGAGAACAAGTCAGCTATCAATCTCAGTAAGGGATCTGGCG CACACTGCAGGACAAAGCACATCGGAGTGCGCTGGCACAGAATTCGAGAG TGGATTCGGGAAGGAATATTGGCGTTGAAATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig15559:3953..4435+

>mRNA_H-paniculata_contig15559.3244.1 ID=mRNA_H-paniculata_contig15559.3244.1|Name=mRNA_H-paniculata_contig15559.3244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at H-paniculata_contig15559:3953..4435+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGACCCATCTCGAGAAGACTTCCGTACATGCAAGCACTTTTTTCG
TTATCTCAGTACTGTGCCTGACCTCGGCATTACGCTCGGCGGTAAGAGCA
ATGGTCACGGTCTTGAAGGATTCGTTGATGCCGACTGGGCGGGAGATATC
GAGGACCGAAAGTCCACTACAGGATACGTATTCAAGCTAAAGGGCGGTGC
GATAAGTTGGTGCTTCAGGAAGCAACAGTTAGTCACGTGGTCCAGTACAG
AGGCAGAGTACGTTGCTGCAGGAGAAGCGGGGAAGGAGGCGGTATATCAG
AAGGATTTACTAGGATCGATAGGTTTCGGATGCAGGGGGAGCACGACATG
GCTTGAGAACAAGTCAGCTATCAATCTCAGTAAGGGATCTGGCGCACACT
GCAGGACAAAGCACATCGGAGTGCGCTGGCACAGAATTCGAGAGTGGATT
CGGGAAGGAATATTGGCGTTGAAATAGATGGAGGACCCATCTCGAGAAGA
CTTCCGTACATGCAAGCACTTTTTTCGTTATCTCAGTACTGTGCCTGACC
TCGGCATTACGCTCGGCGGTAAGAGCAATGGTCACGGTCTTGAAGGATTC
GTTGATGCCGACTGGGCGGGAGATATCGAGGACCGAAAGTCCACTACAGG
ATACGTATTCAAGCTAAAGGGCGGTGCGATAAGTTGGTGCTTCAGGAAGC
AACAGTTAGTCACGTGGTCCAGTACAGAGGCAGAGTACGTTGCTGCAGGA
GAAGCGGGGAAGGAGGCGGTATATCAGAAGGATTTACTAGGATCGATAGG
TTTCGGATGCAGGGGGAGCACGACATGGCTTGAGAACAAGTCAGCTATCA
ATCTCAGTAAGGGATCTGGCGCACACTGCAGGACAAAGCACATCGGAGTG
CGCTGGCACAGAATTCGAGAGTGGATTCGGGAAGGAATATTGGCGTTGAA
ATAG
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