mRNA_H-paniculata_contig15559.3244.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig15559.3244.1 vs. uniprot
Match: A0A2N9GS71_FAGSY (Uncharacterized protein n=3 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GS71_FAGSY) HSP 1 Score: 140 bits (353), Expect = 3.950e-38 Identity = 71/160 (44.38%), Postives = 98/160 (61.25%), Query Frame = 1
Query: 1 RRMEDPSREDFRTCKHFFRYLSTVPDLGITLGGKSNGHGLEGFVDADWAGDIEDRKSTTGYVFKLKGGAISWCFRKQQLVTWSSTEAEYVAAGEAGKEAVYQKDLLGSIGFGCRGSTTWLENKSAINLSKGSGAHCRTKHIGVRWHRIREWIREGILALK 480
R M +P RE + K FRYL + GI + + + G+VDAD+AG+++DR+STTGYVF L GG I W Q +V S+TEAEY+A EA KEA++ K L+ +G G +++SAI L+K H RTKHI VR+H+IRE I G + L+
Sbjct: 92 RYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQPGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLNQGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLE 251
BLAST of mRNA_H-paniculata_contig15559.3244.1 vs. uniprot
Match: UPI0006A737CF (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A737CF) HSP 1 Score: 140 bits (354), Expect = 1.100e-37 Identity = 74/161 (45.96%), Postives = 101/161 (62.73%), Query Frame = 1
Query: 1 RRMEDPSREDFRTCKHFFRYLSTVPDLGITL--GGKSNGHGLEGFVDADWAGDIEDRKSTTGYVFKLKGGAISWCFRKQQLVTWSSTEAEYVAAGEAGKEAVYQKDLLGSIGFGCR-GSTTWLENKSAINLSKGSGAHCRTKHIGVRWHRIREWIREGILA 474
R ME+P E KH RY+ GI GG+ L G+VD+D+AGD +DRKST+G+ F GGA+SW +KQ +VT S+TEAEYVAA +AV+ +++L IGFG G+ + +N SAI LSK H R+KHI VR+H +RE + EGI++
Sbjct: 150 RYMENPREEHMMAVKHIMRYVKGTAGFGIQYLCGGEEK---LVGYVDSDYAGDEDDRKSTSGFTFMFGGGAVSWSSKKQPIVTLSTTEAEYVAAANGACQAVWMRNMLTEIGFGQGDGTVLFCDNSSAIKLSKNLVLHGRSKHIHVRFHFLRELVNEGIIS 307
BLAST of mRNA_H-paniculata_contig15559.3244.1 vs. uniprot
Match: A0A0L9VUJ5_PHAAN (Uncharacterized protein n=1 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9VUJ5_PHAAN) HSP 1 Score: 135 bits (340), Expect = 7.720e-37 Identity = 64/158 (40.51%), Postives = 101/158 (63.92%), Query Frame = 1
Query: 7 MEDPSREDFRTCKHFFRYLSTVPDLGITLGGKSNGHGLEGFVDADWAGDIEDRKSTTGYVFKLKGGAISWCFRKQQLVTWSSTEAEYVAAGEAGKEAVYQKDLLGSIGFGCRGSTTWLENKSAINLSKGSGAHCRTKHIGVRWHRIREWIREGILALK 480
M +P E + K RY+ D+ + GG + G+VD+D+AGD++ RKSTTGYVFKL GG +SW + Q +V S+TEAEY+AA +A KEA++ + LL +G T + +++SA+++++ H RTKHIGV++H +RE + +G + L+
Sbjct: 37 MANPGEEHWNAVKRVLRYIKGTSDVALCFGGSK--FIVRGYVDSDYAGDLDKRKSTTGYVFKLAGGVVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEELGHKQNKITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEKGDVDLE 192
BLAST of mRNA_H-paniculata_contig15559.3244.1 vs. uniprot
Match: A0A427XXX1_9TREE (Uncharacterized protein n=2 Tax=Saitozyma podzolica TaxID=1890683 RepID=A0A427XXX1_9TREE) HSP 1 Score: 134 bits (336), Expect = 8.330e-37 Identity = 66/134 (49.25%), Postives = 87/134 (64.93%), Query Frame = 1
Query: 79 LGITLGGKSNGHGLEGFVDADWAGDIEDRKSTTGYVFKLKGGAISWCFRKQQLVTWSSTEAEYVAAGEAGKEAVYQKDLLGSIGFGCRGSTT-WLENKSAINLSKGSGAHCRTKHIGVRWHRIREWIREGILAL 477
+ TLGGK+ LEG+VDADW G + R+STTG++F L G AI W R+Q V S+ EAEYVA EA +EAV+ K LL +G + T W +N+ AI L++ G H RTKHI +RWH IRE I +G++ L
Sbjct: 1 MRFTLGGKTAKAELEGWVDADWGGCHDTRRSTTGHIFMLGGSAIVWTSRRQATVASSTVEAEYVAVSEAAREAVWLKGLLDELGVTPKEPTPLWCDNQGAIRLARNPGTHRRTKHIAIRWHLIRELIEDGVVRL 134
BLAST of mRNA_H-paniculata_contig15559.3244.1 vs. uniprot
Match: A0A6D2JBX5_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX5_9BRAS) HSP 1 Score: 139 bits (349), Expect = 1.150e-36 Identity = 70/161 (43.48%), Postives = 103/161 (63.98%), Query Frame = 1
Query: 1 RRMEDPSREDFRTCKHFFRYLSTVPDLGITLGGKSNGHGLEGFVDADWAGDIEDRKSTTGYVFKLKGGAISWCFRKQQLVTWSSTEAEYVAAGEAGKEAVYQKDLLGSIGFGCR-GSTTWLENKSAINLSKGSGAHCRTKHIGVRWHRIREWIREGILALK 480
R ME+P+ + K RY+ GI + G L GFVD+D+AGD++DRKST+GYVF L GGA+SW +KQ +VT S+TEAE+VAA +A++ +++LG IG+ G+T + +N S I LSK H R+KHI VR++ +R+ + E ++ LK
Sbjct: 182 RYMENPNEQHLLAAKRILRYVQGTCGFGIRYK-QGEGEKLVGFVDSDYAGDVDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVAAAYGACQAMWLRNILGEIGWAQEEGTTLFCDNSSTIKLSKNPVLHGRSKHIHVRYYFLRDLVNEEVILLK 341
BLAST of mRNA_H-paniculata_contig15559.3244.1 vs. uniprot
Match: A0A2P5AAW9_PARAD (Uncharacterized protein (Fragment) n=1 Tax=Parasponia andersonii TaxID=3476 RepID=A0A2P5AAW9_PARAD) HSP 1 Score: 135 bits (340), Expect = 1.240e-36 Identity = 68/160 (42.50%), Postives = 99/160 (61.88%), Query Frame = 1
Query: 1 RRMEDPSREDFRTCKHFFRYLSTVPDLGITLGGKSNGHGLEGFVDADWAGDIEDRKSTTGYVFKLKGGAISWCFRKQQLVTWSSTEAEYVAAGEAGKEAVYQKDLLGSIGFGCRGSTTWLENKSAINLSKGSGAHCRTKHIGVRWHRIREWIREGILALK 480
R M + ++ + K RYL ++ + K + GL+G+VDAD AGD++ RKSTTGYVF L G A+ W + Q++V S+TEAEYVA EA KE ++ + L +G ST +++SAI+L+K G H RTKHI VR+H IR + +G+L L+
Sbjct: 83 RYMSNLGKQHWEAVKWILRYLRGTSNMSLCF--KKSDMGLQGYVDADMAGDVDGRKSTTGYVFTLGGTAVGWVSKLQKIVALSTTEAEYVAVTEASKELIWLQSFLEELGQNYGKSTLHCDSQSAIHLAKNPGYHARTKHIQVRYHFIRSALEDGVLVLE 240
BLAST of mRNA_H-paniculata_contig15559.3244.1 vs. uniprot
Match: H3G557_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G557_PHYRM) HSP 1 Score: 134 bits (338), Expect = 1.590e-36 Identity = 66/148 (44.59%), Postives = 95/148 (64.19%), Query Frame = 1
Query: 40 CKHFFRYLSTVPDLGITLGGKSNGHGLEGFVDADWAGDIEDRKSTTGYVFKLKGGAISWCFRKQQLVTWSSTEAEYVAAGEAGKEAVYQKDLLGSIGFGCRGSTT-WLENKSAINLSKGSGAHCRTKHIGVRWHRIREWIREGILALK 480
K +YL T DLG+ G + G L G+ DA+WAGD++ R+STTGYVF L G AISW ++Q V SSTEAEY+A A +EAV+ + LL +G C G+TT + +N+ I L+K H RTKHI +++H +RE + + ++ L+
Sbjct: 75 AKRILKYLKTTQDLGLVFNGGTKGE-LIGYADANWAGDLDSRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLE 221
BLAST of mRNA_H-paniculata_contig15559.3244.1 vs. uniprot
Match: A0A2N9GLA7_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GLA7_FAGSY) HSP 1 Score: 142 bits (358), Expect = 2.610e-36 Identity = 72/160 (45.00%), Postives = 98/160 (61.25%), Query Frame = 1
Query: 1 RRMEDPSREDFRTCKHFFRYLSTVPDLGITLGGKSNGHGLEGFVDADWAGDIEDRKSTTGYVFKLKGGAISWCFRKQQLVTWSSTEAEYVAAGEAGKEAVYQKDLLGSIGFGCRGSTTWLENKSAINLSKGSGAHCRTKHIGVRWHRIREWIREGILALK 480
R M +P RE + K FRYL + GI + + + G+VDAD+AGD++DR+STTGY+F L GG I W Q +V S+TEAEY+A EA KEA++ K L+ +G G +++SAI L+K H RTKHI VR+H+IRE I G + LK
Sbjct: 580 RYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQPGTNSVIGYVDADYAGDVDDRRSTTGYLFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLNQSGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLK 739
BLAST of mRNA_H-paniculata_contig15559.3244.1 vs. uniprot
Match: A0A1J3D358_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3D358_NOCCA) HSP 1 Score: 140 bits (352), Expect = 2.660e-36 Identity = 74/159 (46.54%), Postives = 99/159 (62.26%), Query Frame = 1
Query: 7 MEDPSREDFRTCKHFFRYLSTVPDLGITLGGKSNGH-GLEGFVDADWAGDIEDRKSTTGYVFKLKGGAISWCFRKQQLVTWSSTEAEYVAAGEAGKEAVYQKDLLGSIGFGCR-GSTTWLENKSAINLSKGSGAHCRTKHIGVRWHRIREWIREGILAL 477
M +P+ T K RYL D GI + G L G+ D+D+AGDI+D KST+GYVF L GGA++W RKQ +VT SSTEAEYVAA +A++ K +LG IGF G T + +N S I LSK + H ++KHI VR+H +RE +EG++ L
Sbjct: 298 MANPTELHLATAKRIMRYLKGTLDFGIWYRRERKGSLSLLGYTDSDYAGDIDDCKSTSGYVFLLSGGAVAWSSRKQPIVTLSSTEAEYVAAATCACQAIWMKRVLGEIGFEQEDGMTLFCDNTSTIKLSKNAVMHGKSKHIRVRYHFLRELSKEGLVTL 456
BLAST of mRNA_H-paniculata_contig15559.3244.1 vs. uniprot
Match: A0A2N9HJ76_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HJ76_FAGSY) HSP 1 Score: 142 bits (358), Expect = 3.010e-36 Identity = 72/160 (45.00%), Postives = 99/160 (61.88%), Query Frame = 1
Query: 1 RRMEDPSREDFRTCKHFFRYLSTVPDLGITLGGKSNGHGLEGFVDADWAGDIEDRKSTTGYVFKLKGGAISWCFRKQQLVTWSSTEAEYVAAGEAGKEAVYQKDLLGSIGFGCRGSTTWLENKSAINLSKGSGAHCRTKHIGVRWHRIREWIREGILALK 480
R M +P RE + K FRYL + GI +S + + G+VDAD+AG+++DR+STTGYVF L GG I W Q +V S+TEAEY+A EA KEA++ K L+ +G G +++SAI L+K H RTKHI VR+H+IRE I G + L+
Sbjct: 787 RYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQSGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLNQGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLE 946 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15559.3244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig15559.3244.1 >prot_H-paniculata_contig15559.3244.1 ID=prot_H-paniculata_contig15559.3244.1|Name=mRNA_H-paniculata_contig15559.3244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp MEDPSREDFRTCKHFFRYLSTVPDLGITLGGKSNGHGLEGFVDADWAGDIback to top mRNA from alignment at H-paniculata_contig15559:3953..4435+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig15559.3244.1 ID=mRNA_H-paniculata_contig15559.3244.1|Name=mRNA_H-paniculata_contig15559.3244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=483bp|location=Sequence derived from alignment at H-paniculata_contig15559:3953..4435+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig15559:3953..4435+ >mRNA_H-paniculata_contig15559.3244.1 ID=mRNA_H-paniculata_contig15559.3244.1|Name=mRNA_H-paniculata_contig15559.3244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at H-paniculata_contig15559:3953..4435+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |