mRNA_H-paniculata_contig1554.3235.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1554.3235.1
Unique NamemRNA_H-paniculata_contig1554.3235.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1554.3235.1 vs. uniprot
Match: A0A6H5KGY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGY8_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 3.020e-8
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 3 
Query:  255 VDVEENVYGDGFGWGFLTDATLTATRIRG 341
            VDV+EN YGDGFGW FL DATLTATRIRG
Sbjct:    7 VDVQENGYGDGFGWKFLIDATLTATRIRG 35
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BLAST of mRNA_H-paniculata_contig1554.3235.1 vs. uniprot
Match: A0A6H5JUM8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUM8_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.620e-6
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 3 
Query:  255 VDVEENVYGDGFGWGFLTDATLTATRIRG 341
            VDV+EN YGDGFGW FL DATLTATRIRG
Sbjct:    7 VDVQENGYGDGFGWKFLIDATLTATRIRG 35
[Close]
BLAST of mRNA_H-paniculata_contig1554.3235.1 vs. uniprot
Match: D7G0P0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P0_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 5.710e-6
Identity = 24/29 (82.76%), Postives = 25/29 (86.21%), Query Frame = 3 
Query:  252 LVDVEENVYGDGFGWGFLTDATLTATRIR 338
            +VDV EN YGDGFGW FL DATLTATRIR
Sbjct:    1 MVDVPENGYGDGFGWKFLIDATLTATRIR 29
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1554.3235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KGY8_9PHAE3.020e-886.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUM8_9PHAE1.620e-686.21Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G0P0_ECTSI5.710e-682.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1554contigH-paniculata_contig1554:11687..13470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size383
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1554.3235.1prot_H-paniculata_contig1554.3235.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1554 11698..13470 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929244.0057187-UTR-H-paniculata_contig1554:11686..116971622929244.0057187-UTR-H-paniculata_contig1554:11686..11697Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1554 11687..11697 +
1691480784.7341347-UTR-H-paniculata_contig1554:11686..116971691480784.7341347-UTR-H-paniculata_contig1554:11686..11697Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1554 11687..11697 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929244.0237296-CDS-H-paniculata_contig1554:11697..117731622929244.0237296-CDS-H-paniculata_contig1554:11697..11773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1554 11698..11773 +
1691480784.7441015-CDS-H-paniculata_contig1554:11697..117731691480784.7441015-CDS-H-paniculata_contig1554:11697..11773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1554 11698..11773 +
1622929244.0456831-CDS-H-paniculata_contig1554:12868..130351622929244.0456831-CDS-H-paniculata_contig1554:12868..13035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1554 12869..13035 +
1691480784.7513983-CDS-H-paniculata_contig1554:12868..130351691480784.7513983-CDS-H-paniculata_contig1554:12868..13035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1554 12869..13035 +
1622929244.068083-CDS-H-paniculata_contig1554:13341..134701622929244.068083-CDS-H-paniculata_contig1554:13341..13470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1554 13342..13470 +
1691480784.7586002-CDS-H-paniculata_contig1554:13341..134701691480784.7586002-CDS-H-paniculata_contig1554:13341..13470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1554 13342..13470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1554.3235.1

>prot_H-paniculata_contig1554.3235.1 ID=prot_H-paniculata_contig1554.3235.1|Name=mRNA_H-paniculata_contig1554.3235.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
MIVVVDIRRPAGLGVDATLQLEAFLEHAQTLVSHCGALGRAGAVETPFGL
IVPASSIHGKVVQVVCKGRPVCSADLSSMRLVDVEENVYGDGFGWGFLTD
ATLTATRIRGLSKKVNDARNTTG*
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mRNA from alignment at H-paniculata_contig1554:11687..13470+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1554.3235.1 ID=mRNA_H-paniculata_contig1554.3235.1|Name=mRNA_H-paniculata_contig1554.3235.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1784bp|location=Sequence derived from alignment at H-paniculata_contig1554:11687..13470+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGATCAACAGCATGATTGTAGTAGTTGACATTCGTCGTCCCGCGGGACTC
GGGGTGGATGCCACCCTTCAGCTCGAGGCATTTCTTGGTGCGTGAAGCTT
GAATTACTCTCATTCAAATAGATTGGTCAGGGGCGTTGTACTTTTAAATG
TTGCTCGTGCTGGATGCTGAATGCCTCCCTGAAAGCCCGTCATGTACTTT
TCTGAGTGGTAAATTTTAGCGAGCTGCCATGTATAATATATGTGATACGT
TGTGAGCCTCAGCGAGGCCATTCATTACAACGACTATCTGTATGAGGCTC
GAGTGCGTATGTTGTTACTCGTTGCGATTCTATCCATCGGCAATTCACCC
GCACCCTCCCATCCACCCGATACATCTGTAGCTTCACGGAATCTCCACCC
CAAAAGGGTATAGCAGCGTCTATGACATGATGACGGGAATAGGGAGCAAC
CGTTCTTCTGACACCAACTCCAATAATATAGTACATCCAGCACATACCGA
GAGTTAGTATTGTTCTTTCGCAACGCCTGCAGCGCTCGACGTCTATTGCG
AGGTTTTTTTGTCCCGAAACAGCCAGCCCCAGCATTAACTAGTATACTGA
CAAAAAGTCGTTTCAACTGAAGGGAGAAGCAACACGATGACAAGCTCTAT
TTTTCCAGCTAGACGCCTAAATAGTTCGAGTGCAGACCTGACTTTTGACA
CCAAGATTACGCCATGCTCAAGGCATCGAGTACACAAGTTGCATGTGACC
AAGATGTAAAATTGAATCTGCTACGCCCGAAAACAACGACCAAAAAACAG
TTATTCCGAAATGATCCTTCACCACAATCAAGACTACCTGCCATCGAATA
TGGATACCTGCCCCCCTCTGGGGCCCCCTTCAGTCCAAATGGCTCTAAGC
GAACGATGGTGAGAATTATTTCCCGTTGCGCCCGGGAATGAACCAGCTCT
TGCCAAGTCCGTTCTTCTTCTGCTCGCGGAATCCTACACATCACCAGCAG
CAGCAAGATTTCTACCTCACCGGCGACCAATCAACGCGTTTCCTTGATCA
AACATTAATCTAGTCAGTCATAGGTACAGCACGATTGATCAATGTTCCTT
GCCCGTGAATGTTGTTTCTCACAACTCTTTCTCGAACAAAACTCGCACTG
CTTTATTGCCCGACGGGTGGTCCATTGAACAGAGCACGCGCAGACTTTAG
TGTCACACTGCGGCGCCTTGGGTCGCGCGGGTGCTGTGGAAACACCTTTT
GGTTTGATCGTCCCGGCGAGCTCCATTCACGGCAAGGTCGTGCAAGTCGT
GTGCAAAGGACGGCCTGTCTGTTCCGCGGACTTATCATCCATGCGATTGG
TGAGATGTGCCTAATGGATGGACGATATCATCATGTTTCAAATGGAGTGT
CGCCTTCTTTCAACTAATGTTTGTGTTTGTATGGGTGTGTTGTAGTCCTT
CTGGTCTCTTTTACCCAGTTACTGACAGTGAGAAGGAGGTTTGAGGAGTA
ATGAAACTCATGAACTACCTCTCTAAATGAGGACTATATTCCGAGCATAT
ACTAGAGCGTGTGCTGTTCGTTCCTGGGCTATTTTCAAACGATGAGCAGG
GCGATTTGGTGATGTGTGGTAAAGAATTAATGTGCCTGCTCTCGATAATG
AACAGGTGGACGTCGAGGAGAACGTGTATGGGGATGGATTCGGCTGGGGA
TTCCTGACTGATGCCACCCTGACTGCCACAAGGATACGCGGCCTATCCAA
GAAGGTAAACGATGCTCGAAACACCACGGGTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1554:11687..13470+

>mRNA_H-paniculata_contig1554.3235.1 ID=mRNA_H-paniculata_contig1554.3235.1|Name=mRNA_H-paniculata_contig1554.3235.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig1554:11687..13470+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTGTAGTAGTTGACATTCGTCGTCCCGCGGGACTCGGGGTGGATGC
CACCCTTCAGCTCGAGGCATTTCTTGATGATTGTAGTAGTTGACATTCGT
CGTCCCGCGGGACTCGGGGTGGATGCCACCCTTCAGCTCGAGGCATTTCT
TGAGCACGCGCAGACTTTAGTGTCACACTGCGGCGCCTTGGGTCGCGCGG
GTGCTGTGGAAACACCTTTTGGTTTGATCGTCCCGGCGAGCTCCATTCAC
GGCAAGGTCGTGCAAGTCGTGTGCAAAGGACGGCCTGTCTGTTCCGCGGA
CTTATCATCCATGCGATTGAGCACGCGCAGACTTTAGTGTCACACTGCGG
CGCCTTGGGTCGCGCGGGTGCTGTGGAAACACCTTTTGGTTTGATCGTCC
CGGCGAGCTCCATTCACGGCAAGGTCGTGCAAGTCGTGTGCAAAGGACGG
CCTGTCTGTTCCGCGGACTTATCATCCATGCGATTGGTGGACGTCGAGGA
GAACGTGTATGGGGATGGATTCGGCTGGGGATTCCTGACTGATGCCACCC
TGACTGCCACAAGGATACGCGGCCTATCCAAGAAGGTAAACGATGCTCGA
AACACCACGGGTTAGGTGGACGTCGAGGAGAACGTGTATGGGGATGGATT
CGGCTGGGGATTCCTGACTGATGCCACCCTGACTGCCACAAGGATACGCG
GCCTATCCAAGAAGGTAAACGATGCTCGAAACACCACGGGTTAG
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