mRNA_H-paniculata_contig1544.3185.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1544.3185.1 vs. uniprot
Match: D7G0Q8_ECTSI (Hypothetical UPF0043 protein slr0305 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0Q8_ECTSI) HSP 1 Score: 73.9 bits (180), Expect = 3.700e-14 Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 1
Query: 1 VIAKTFCVDFLSVVLALASGVVFGGVVNGALISATCATVASVVGFQLAR 147
V+AKTFCVDFLS+VLAL SGVVFGGV+ GAL+S CAT+AS +GFQLAR
Sbjct: 180 VVAKTFCVDFLSIVLALGSGVVFGGVLQGALVSTACATIASGLGFQLAR 228
BLAST of mRNA_H-paniculata_contig1544.3185.1 vs. uniprot
Match: A0A836CC84_9STRA (Hypothetical UPF0043 protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC84_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 2.560e-11 Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 1
Query: 7 AKTFCVDFLSVVLALASGVVFGGVVNGALISATCATVASVVGFQLAR 147
+KT C DFLSV+LAL SG++FGGVV GA S CAT+ASVVGFQLAR
Sbjct: 118 SKTLCADFLSVILALISGILFGGVVEGAAASVVCATLASVVGFQLAR 164
BLAST of mRNA_H-paniculata_contig1544.3185.1 vs. uniprot
Match: A0A7S2HIK0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2HIK0_9EUKA) HSP 1 Score: 55.8 bits (133), Expect = 2.110e-8 Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 1
Query: 1 VIAKTFCVDFLSVVLALASGVVFGGVVNGALISATCATVASVVGFQLAR 147
V+AK F VDFLS+ LA +SG++FGGV GAL+SA ATV S+V QL+R
Sbjct: 1 VVAKVFLVDFLSIALAFSSGILFGGVFQGALVSAAGATVGSLVALQLSR 49
BLAST of mRNA_H-paniculata_contig1544.3185.1 vs. uniprot
Match: A0A7S3NJR5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJR5_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 2.540e-8 Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 1
Query: 7 AKTFCVDFLSVVLALASGVVFGGVVNGALISATCATVASVVGFQLAR 147
AKT C+D L+ VLALASGV+FGG++ GALIS+TCA + S + F LAR
Sbjct: 183 AKTLCIDALAFVLALASGVIFGGLIQGALISSTCAALGSSLPFLLAR 229
BLAST of mRNA_H-paniculata_contig1544.3185.1 vs. uniprot
Match: F0Y2Z0_AURAN (Fucosyltransferase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2Z0_AURAN) HSP 1 Score: 55.8 bits (133), Expect = 8.940e-8 Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 1
Query: 1 VIAKTFCVDFLSVVLALASGVVFGGVVNGALISATCATVASVVGFQLAR 147
++AK CVD L+ LA++SGV+FGGVVNGAL++ CAT+ S V F LAR
Sbjct: 2246 IVAKVGCVDPLTFALAISSGVLFGGVVNGALVATACATIGSSVAFGLAR 2294
BLAST of mRNA_H-paniculata_contig1544.3185.1 vs. uniprot
Match: W7TU38_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TU38_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 2.250e-7 Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1
Query: 1 VIAKTFCVDFLSVVLALASGVVFGGVVNGALISATCATVASVVGFQLAR 147
V+AK C+D L++VL L+SG++FGGV GAL S CAT AS +GF LAR
Sbjct: 179 VVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLAR 227
BLAST of mRNA_H-paniculata_contig1544.3185.1 vs. uniprot
Match: A0A4D9CWB6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWB6_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 3.110e-7 Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1
Query: 1 VIAKTFCVDFLSVVLALASGVVFGGVVNGALISATCATVASVVGFQLAR 147
V+AK C+D L++VL L+SG++FGGV GAL S CAT AS +GF LAR
Sbjct: 83 VVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLAR 131
BLAST of mRNA_H-paniculata_contig1544.3185.1 vs. uniprot
Match: A0A7S0F829_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0F829_9EUKA) HSP 1 Score: 52.4 bits (124), Expect = 1.490e-6 Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 1
Query: 1 VIAKTFCVDFLSVVLALASGVVFGGVVNGALISATCATVASVVGFQLAR 147
V+AK F +D +S+ LA ASG++FGGV GA+ISA AT+ S+ FQL+R
Sbjct: 168 VVAKVFLLDVISIALAFASGIIFGGVFEGAIISAVGATLGSLAAFQLSR 216
BLAST of mRNA_H-paniculata_contig1544.3185.1 vs. uniprot
Match: A0A7S2RXW9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RXW9_9STRA) HSP 1 Score: 51.2 bits (121), Expect = 1.790e-6 Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 1
Query: 4 IAKTFCVDFLSVVLALASGVVFGGVVNGALISATCATVASVVG 132
+AKTF +DF+S+ LAL+SG++FGGV GAL+SA AT S+VG
Sbjct: 134 VAKTFLLDFISIGLALSSGIIFGGVFKGALLSAAAATTGSLVG 176
BLAST of mRNA_H-paniculata_contig1544.3185.1 vs. uniprot
Match: A0A7S2UW30_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UW30_9STRA) HSP 1 Score: 51.6 bits (122), Expect = 2.660e-6 Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 1
Query: 4 IAKTFCVDFLSVVLALASGVVFGGVVNGALISATCATVASVVGFQLAR 147
+AK F D L+VVLALA GV FGGV+ GALIS T AT AS + F LAR
Sbjct: 1 VAKLFMFDALTVVLALAGGVFFGGVLEGALISTTMATGASFIAFVLAR 48 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1544.3185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1544.3185.1 >prot_H-paniculata_contig1544.3185.1 ID=prot_H-paniculata_contig1544.3185.1|Name=mRNA_H-paniculata_contig1544.3185.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp VIAKTFCVDFLSVVLALASGVVFGGVVNGALISATCATVASVVGFQLARback to top mRNA from alignment at H-paniculata_contig1544:1215..1361+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1544.3185.1 ID=mRNA_H-paniculata_contig1544.3185.1|Name=mRNA_H-paniculata_contig1544.3185.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=147bp|location=Sequence derived from alignment at H-paniculata_contig1544:1215..1361+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1544:1215..1361+ >mRNA_H-paniculata_contig1544.3185.1 ID=mRNA_H-paniculata_contig1544.3185.1|Name=mRNA_H-paniculata_contig1544.3185.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig1544:1215..1361+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |