mRNA_H-paniculata_contig1544.3185.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1544.3185.1
Unique NamemRNA_H-paniculata_contig1544.3185.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1544.3185.1 vs. uniprot
Match: D7G0Q8_ECTSI (Hypothetical UPF0043 protein slr0305 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0Q8_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 3.700e-14
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 1
Query:    1 VIAKTFCVDFLSVVLALASGVVFGGVVNGALISATCATVASVVGFQLAR 147
            V+AKTFCVDFLS+VLAL SGVVFGGV+ GAL+S  CAT+AS +GFQLAR
Sbjct:  180 VVAKTFCVDFLSIVLALGSGVVFGGVLQGALVSTACATIASGLGFQLAR 228          
BLAST of mRNA_H-paniculata_contig1544.3185.1 vs. uniprot
Match: A0A836CC84_9STRA (Hypothetical UPF0043 protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC84_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.560e-11
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 1
Query:    7 AKTFCVDFLSVVLALASGVVFGGVVNGALISATCATVASVVGFQLAR 147
            +KT C DFLSV+LAL SG++FGGVV GA  S  CAT+ASVVGFQLAR
Sbjct:  118 SKTLCADFLSVILALISGILFGGVVEGAAASVVCATLASVVGFQLAR 164          
BLAST of mRNA_H-paniculata_contig1544.3185.1 vs. uniprot
Match: A0A7S2HIK0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2HIK0_9EUKA)

HSP 1 Score: 55.8 bits (133), Expect = 2.110e-8
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 1
Query:    1 VIAKTFCVDFLSVVLALASGVVFGGVVNGALISATCATVASVVGFQLAR 147
            V+AK F VDFLS+ LA +SG++FGGV  GAL+SA  ATV S+V  QL+R
Sbjct:    1 VVAKVFLVDFLSIALAFSSGILFGGVFQGALVSAAGATVGSLVALQLSR 49          
BLAST of mRNA_H-paniculata_contig1544.3185.1 vs. uniprot
Match: A0A7S3NJR5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJR5_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.540e-8
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 1
Query:    7 AKTFCVDFLSVVLALASGVVFGGVVNGALISATCATVASVVGFQLAR 147
            AKT C+D L+ VLALASGV+FGG++ GALIS+TCA + S + F LAR
Sbjct:  183 AKTLCIDALAFVLALASGVIFGGLIQGALISSTCAALGSSLPFLLAR 229          
BLAST of mRNA_H-paniculata_contig1544.3185.1 vs. uniprot
Match: F0Y2Z0_AURAN (Fucosyltransferase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2Z0_AURAN)

HSP 1 Score: 55.8 bits (133), Expect = 8.940e-8
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 1
Query:    1 VIAKTFCVDFLSVVLALASGVVFGGVVNGALISATCATVASVVGFQLAR 147
            ++AK  CVD L+  LA++SGV+FGGVVNGAL++  CAT+ S V F LAR
Sbjct: 2246 IVAKVGCVDPLTFALAISSGVLFGGVVNGALVATACATIGSSVAFGLAR 2294          
BLAST of mRNA_H-paniculata_contig1544.3185.1 vs. uniprot
Match: W7TU38_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TU38_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.250e-7
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1
Query:    1 VIAKTFCVDFLSVVLALASGVVFGGVVNGALISATCATVASVVGFQLAR 147
            V+AK  C+D L++VL L+SG++FGGV  GAL S  CAT AS +GF LAR
Sbjct:  179 VVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLAR 227          
BLAST of mRNA_H-paniculata_contig1544.3185.1 vs. uniprot
Match: A0A4D9CWB6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWB6_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.110e-7
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1
Query:    1 VIAKTFCVDFLSVVLALASGVVFGGVVNGALISATCATVASVVGFQLAR 147
            V+AK  C+D L++VL L+SG++FGGV  GAL S  CAT AS +GF LAR
Sbjct:   83 VVAKNLCLDGLALVLGLSSGILFGGVWEGALSSTVCATGASFIGFMLAR 131          
BLAST of mRNA_H-paniculata_contig1544.3185.1 vs. uniprot
Match: A0A7S0F829_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0F829_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 1.490e-6
Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 1
Query:    1 VIAKTFCVDFLSVVLALASGVVFGGVVNGALISATCATVASVVGFQLAR 147
            V+AK F +D +S+ LA ASG++FGGV  GA+ISA  AT+ S+  FQL+R
Sbjct:  168 VVAKVFLLDVISIALAFASGIIFGGVFEGAIISAVGATLGSLAAFQLSR 216          
BLAST of mRNA_H-paniculata_contig1544.3185.1 vs. uniprot
Match: A0A7S2RXW9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RXW9_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.790e-6
Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    4 IAKTFCVDFLSVVLALASGVVFGGVVNGALISATCATVASVVG 132
            +AKTF +DF+S+ LAL+SG++FGGV  GAL+SA  AT  S+VG
Sbjct:  134 VAKTFLLDFISIGLALSSGIIFGGVFKGALLSAAAATTGSLVG 176          
BLAST of mRNA_H-paniculata_contig1544.3185.1 vs. uniprot
Match: A0A7S2UW30_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UW30_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.660e-6
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 1
Query:    4 IAKTFCVDFLSVVLALASGVVFGGVVNGALISATCATVASVVGFQLAR 147
            +AK F  D L+VVLALA GV FGGV+ GALIS T AT AS + F LAR
Sbjct:    1 VAKLFMFDALTVVLALAGGVFFGGVLEGALISTTMATGASFIAFVLAR 48          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1544.3185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7G0Q8_ECTSI3.700e-1477.55Hypothetical UPF0043 protein slr0305 n=2 Tax=Ectoc... [more]
A0A836CC84_9STRA2.560e-1172.34Hypothetical UPF0043 protein n=1 Tax=Tribonema min... [more]
A0A7S2HIK0_9EUKA2.110e-861.22Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S3NJR5_9STRA2.540e-863.83Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
F0Y2Z0_AURAN8.940e-859.18Fucosyltransferase n=1 Tax=Aureococcus anophageffe... [more]
W7TU38_9STRA2.250e-759.18Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
A0A4D9CWB6_9STRA3.110e-759.18Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S0F829_9EUKA1.490e-655.10Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A7S2RXW9_9STRA1.790e-660.47Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2UW30_9STRA2.660e-664.58Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1544contigH-paniculata_contig1544:1215..1361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue3e-11
Seed eggNOG ortholog2880.D7G0Q8
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsCOG0398@1,KOG3140@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929236.0575583-CDS-H-paniculata_contig1544:1214..13611622929236.0575583-CDS-H-paniculata_contig1544:1214..1361Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1544 1215..1361 +
1691480781.8217418-CDS-H-paniculata_contig1544:1214..13611691480781.8217418-CDS-H-paniculata_contig1544:1214..1361Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1544 1215..1361 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1544.3185.1prot_H-paniculata_contig1544.3185.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1544 1215..1361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1544.3185.1

>prot_H-paniculata_contig1544.3185.1 ID=prot_H-paniculata_contig1544.3185.1|Name=mRNA_H-paniculata_contig1544.3185.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
VIAKTFCVDFLSVVLALASGVVFGGVVNGALISATCATVASVVGFQLAR
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mRNA from alignment at H-paniculata_contig1544:1215..1361+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1544.3185.1 ID=mRNA_H-paniculata_contig1544.3185.1|Name=mRNA_H-paniculata_contig1544.3185.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=147bp|location=Sequence derived from alignment at H-paniculata_contig1544:1215..1361+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGATCGCGAAAACCTTTTGTGTGGATTTTTTGTCTGTGGTTCTAGCCCT CGCTTCAGGGGTGGTCTTCGGCGGCGTGGTGAACGGAGCCCTCATCTCGG CGACGTGTGCAACAGTCGCCTCGGTCGTGGGCTTTCAGCTAGCTCGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1544:1215..1361+

>mRNA_H-paniculata_contig1544.3185.1 ID=mRNA_H-paniculata_contig1544.3185.1|Name=mRNA_H-paniculata_contig1544.3185.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig1544:1215..1361+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGATCGCGAAAACCTTTTGTGTGGATTTTTTGTCTGTGGTTCTAGCCCT
CGCTTCAGGGGTGGTCTTCGGCGGCGTGGTGAACGGAGCCCTCATCTCGG
CGACGTGTGCAACAGTCGCCTCGGTCGTGGGCTTTCAGCTAGCTCGAGTG
ATCGCGAAAACCTTTTGTGTGGATTTTTTGTCTGTGGTTCTAGCCCTCGC
TTCAGGGGTGGTCTTCGGCGGCGTGGTGAACGGAGCCCTCATCTCGGCGA
CGTGTGCAACAGTCGCCTCGGTCGTGGGCTTTCAGCTAGCTCGA
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