mRNA_H-paniculata_contig14972.2954.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14972.2954.1
Unique NamemRNA_H-paniculata_contig14972.2954.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig14972.2954.1 vs. uniprot
Match: A0A6H5KV10_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV10_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.600e-10
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:  223 REERLMAQALYMELQGLPGMSSKEEARRMLKDAIPTMAEVPSPPNS 360
            REE L AQA Y EL  LPGMSSK+EARRMLKDAIP+MA+VPSPP S
Sbjct: 1547 REETLAAQAFYAELLRLPGMSSKKEARRMLKDAIPSMADVPSPPPS 1592
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14972.2954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KV10_9PHAE2.600e-1078.26Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14972contigH-paniculata_contig14972:4500..5675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size515
Cds size513
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929197.1339567-CDS-H-paniculata_contig14972:4499..47451622929197.1339567-CDS-H-paniculata_contig14972:4499..4745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14972 4500..4745 +
1691480766.5212433-CDS-H-paniculata_contig14972:4499..47451691480766.5212433-CDS-H-paniculata_contig14972:4499..4745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14972 4500..4745 +
1622929197.1508958-CDS-H-paniculata_contig14972:5408..56751622929197.1508958-CDS-H-paniculata_contig14972:5408..5675Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14972 5409..5675 +
1691480766.529967-CDS-H-paniculata_contig14972:5408..56751691480766.529967-CDS-H-paniculata_contig14972:5408..5675Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14972 5409..5675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14972.2954.1prot_H-paniculata_contig14972.2954.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14972 4500..5675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14972.2954.1

>prot_H-paniculata_contig14972.2954.1 ID=prot_H-paniculata_contig14972.2954.1|Name=mRNA_H-paniculata_contig14972.2954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=171bp
SPSTPTANAAATAAASGPIKLKIVMPQPAVAAAGGAAASTRAGGLAAGAG
VAVAAVMDNRKDGDWEERQERRRKREERLMAQALYMELQGLPGMSSKEEA
RRMLKDAIPTMAEVPSPPNSPRWVGESSRGGEGTIYHENRSGNTADYSAD
RSDGSKECAGGYGAASEGEGV
back to top

mRNA from alignment at H-paniculata_contig14972:4500..5675+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14972.2954.1 ID=mRNA_H-paniculata_contig14972.2954.1|Name=mRNA_H-paniculata_contig14972.2954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1176bp|location=Sequence derived from alignment at H-paniculata_contig14972:4500..5675+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACCGTCCACCCCAACGGCCAACGCTGCTGCTACTGCTGCTGCTAGCGG
TCCGATTAAGCTCAAGATAGTCATGCCACAGCCTGCTGTTGCAGCAGCAG
GTGGTGCTGCTGCCTCCACCAGGGCTGGTGGCTTGGCTGCTGGGGCAGGG
GTAGCTGTGGCCGCGGTCATGGACAACCGGAAGGATGGGGACTGGGAGGA
GAGGCAGGAGAGGCGACGGAAGCGGGAGGAGCGGTTGATGGCGCAGGTGG
GGGGAGGAGGCGGGGAGAACAAGTGATGTTTCTTTTTTGTTTTGTTTTGG
TTGTAGGGCAGGGGCAAGGGCGGGGTGAGTTGGGCAATAGTTTTTCACCC
CCCGGACAAATTTGAGTATTTGGCGTATTCGCCACGAAACTTGGAAAGTA
TTCGCCCAAGTTTCAGAATGAGCGGACACATGAAAACAGAATATAGCACC
TACCCCTGTCCATTCGATTTACGAGGACTATTATTTAGTAGTCGTGGATG
GTCCGAGGCACATAGGATACACGAAGTCATTCTGAAATTCCGGCGAATGC
TTTTTTAATTTCGTGATGAATACGCCAATTATTCGTGTTTGTTCGGAGGG
TGGATAACTTGCAGCATAAATGCATTTTATGCCGACGTTACCTAATCCAT
AATCACGACTGTAGATACATAGAATAACTCGTTAAAATTTTCGAACCCGA
AAGGGGTGGTTAATGAAACGAACCTGTGAGCTGTCGAAACACCTTGGAAG
AGCCAGCCCCCCCCAGCAGGGAAAACCCCTGTACCTACCCCCACCCACAT
TTTTTTTTTAGGTGTTTTTTTTCTTGCCGCTCCATCTTCATTTAGTTTTT
GTTGCGTGAAAGTCCCCCCCCCCCCCCTCCCCCCTCCTCTGCTCGCCTAA
CAAAAACAGGCCTTGTACATGGAACTCCAAGGTTTGCCCGGCATGTCCTC
CAAAGAAGAAGCAAGACGAATGCTTAAAGACGCCATTCCCACGATGGCTG
AAGTTCCGTCGCCTCCTAACAGCCCTAGGTGGGTAGGAGAAAGCAGTCGC
GGAGGCGAAGGAACCATCTATCACGAAAACCGATCCGGGAATACCGCGGA
CTATTCCGCGGACCGTTCCGATGGTTCCAAGGAATGTGCTGGAGGGTATG
GTGCCGCGAGCGAAGGGGAGGGCGTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig14972:4500..5675+

>mRNA_H-paniculata_contig14972.2954.1 ID=mRNA_H-paniculata_contig14972.2954.1|Name=mRNA_H-paniculata_contig14972.2954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at H-paniculata_contig14972:4500..5675+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACCGTCCACCCCAACGGCCAACGCTGCTGCTACTGCTGCTGCTAGCGG
TCCGATTAAGCTCAAGATAGTCATGCCACAGCCTGCTGTTGCAGCAGCAG
GTGGTGCTGCTGCCTCCACCAGGGCTGGTGGCTTGGCTGCTGGGGCAGGG
GTAGCTGTGGCCGCGGTCATGGACAACCGGAAGGATGGGGACTGGGAGGA
GAGGCAGGAGAGGCGACGGAAGCGGGAGGAGCGGTTGATGGCGCAGTCAC
CGTCCACCCCAACGGCCAACGCTGCTGCTACTGCTGCTGCTAGCGGTCCG
ATTAAGCTCAAGATAGTCATGCCACAGCCTGCTGTTGCAGCAGCAGGTGG
TGCTGCTGCCTCCACCAGGGCTGGTGGCTTGGCTGCTGGGGCAGGGGTAG
CTGTGGCCGCGGTCATGGACAACCGGAAGGATGGGGACTGGGAGGAGAGG
CAGGAGAGGCGACGGAAGCGGGAGGAGCGGTTGATGGCGCAGGCCTTGTA
CATGGAACTCCAAGGTTTGCCCGGCATGTCCTCCAAAGAAGAAGCAAGAC
GAATGCTTAAAGACGCCATTCCCACGATGGCTGAAGTTCCGTCGCCTCCT
AACAGCCCTAGGTGGGTAGGAGAAAGCAGTCGCGGAGGCGAAGGAACCAT
CTATCACGAAAACCGATCCGGGAATACCGCGGACTATTCCGCGGACCGTT
CCGATGGTTCCAAGGAATGTGCTGGAGGGTATGGTGCCGCGAGCGAAGGG
GAGGGCGTCGCCTTGTACATGGAACTCCAAGGTTTGCCCGGCATGTCCTC
CAAAGAAGAAGCAAGACGAATGCTTAAAGACGCCATTCCCACGATGGCTG
AAGTTCCGTCGCCTCCTAACAGCCCTAGGTGGGTAGGAGAAAGCAGTCGC
GGAGGCGAAGGAACCATCTATCACGAAAACCGATCCGGGAATACCGCGGA
CTATTCCGCGGACCGTTCCGATGGTTCCAAGGAATGTGCTGGAGGGTATG
GTGCCGCGAGCGAAGGGGAGGGCGTC
back to top