prot_H-paniculata_contig14972.2954.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig14972.2954.1
Unique Nameprot_H-paniculata_contig14972.2954.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length171
Homology
[Close]
BLAST of mRNA_H-paniculata_contig14972.2954.1 vs. uniprot
Match: A0A6H5KV10_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV10_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.600e-10
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 0 
Query:   75 REERLMAQALYMELQGLPGMSSKEEARRMLKDAIPTMAEVPSPPNS 120
            REE L AQA Y EL  LPGMSSK+EARRMLKDAIP+MA+VPSPP S
Sbjct: 1547 REETLAAQAFYAELLRLPGMSSKKEARRMLKDAIPSMADVPSPPPS 1592
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14972.2954.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KV10_9PHAE2.600e-1078.26Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14972contigH-paniculata_contig14972:4500..5675 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14972.2954.1mRNA_H-paniculata_contig14972.2954.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig14972 4500..5675 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig14972.2954.1 ID=prot_H-paniculata_contig14972.2954.1|Name=mRNA_H-paniculata_contig14972.2954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=171bp
SPSTPTANAAATAAASGPIKLKIVMPQPAVAAAGGAAASTRAGGLAAGAG
VAVAAVMDNRKDGDWEERQERRRKREERLMAQALYMELQGLPGMSSKEEA
RRMLKDAIPTMAEVPSPPNSPRWVGESSRGGEGTIYHENRSGNTADYSAD
RSDGSKECAGGYGAASEGEGV
back to top