mRNA_H-paniculata_contig14952.2946.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14952.2946.1
Unique NamemRNA_H-paniculata_contig14952.2946.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14952.2946.1 vs. uniprot
Match: D7FMG7_ECTSI (Ankyrin repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG7_ECTSI)

HSP 1 Score: 295 bits (754), Expect = 6.920e-91
Identity = 131/178 (73.60%), Postives = 152/178 (85.39%), Query Frame = 1 
Query:    1 DPSVILTWCIALCMVIPQAGLKPPLCQAQKTFARNIDHRASQEEPIPICPLLWPIARQIAGAANDLGINDPCYRHQWWTAVELVESPLPEGFSRVVKEDGTLAYRWPKASATPGKIGAHPRLEDFIAKIDYDSKLSTSHLRRSEPTVSKG-----LATSHPIRCFVACFKGDLTSVRR 519
            D SV+L WCI L  +IP+AG KPPLCQAQKTFAR IDHRA+ EEP+P+CPLLWP+ARQ+A AANDLGINDPCYRHQWW+AVELVESPLP+GF RVV+EDGTLAYR+PK+S TPGKIG HP L+D++ KIDYDSKLSTSHLRRS     +      LA SHPIRCFV+CF+GDLT++RR
Sbjct:  468 DASVVLLWCIGLSAIIPEAGRKPPLCQAQKTFARKIDHRATDEEPVPLCPLLWPVARQVASAANDLGINDPCYRHQWWSAVELVESPLPDGFGRVVREDGTLAYRYPKSSETPGKIGTHPLLQDYMDKIDYDSKLSTSHLRRSSRDTRRSSGGQALAASHPIRCFVSCFRGDLTAIRR 645
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BLAST of mRNA_H-paniculata_contig14952.2946.1 vs. uniprot
Match: A0A6H5JIF4_9PHAE (Myosin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIF4_9PHAE)

HSP 1 Score: 295 bits (754), Expect = 2.680e-89
Identity = 131/178 (73.60%), Postives = 153/178 (85.96%), Query Frame = 1 
Query:    1 DPSVILTWCIALCMVIPQAGLKPPLCQAQKTFARNIDHRASQEEPIPICPLLWPIARQIAGAANDLGINDPCYRHQWWTAVELVESPLPEGFSRVVKEDGTLAYRWPKASATPGKIGAHPRLEDFIAKIDYDSKLSTSHLRRSE-----PTVSKGLATSHPIRCFVACFKGDLTSVRR 519
            D SV+L WCI L  +IP+AG KPPLCQAQKTFAR +DHRA+ EEPIP+CPLLWP+ARQ+A AANDLGINDPCYRHQWW+AVELVESPLP+GF RVV+EDGTLAYR+PK+S TPGKIG HP L+D++ KIDYDSKLSTSHLRRS       +  + LA SHPIRCFV+CF+GDLT++RR
Sbjct: 1282 DASVVLLWCIGLSAIIPEAGRKPPLCQAQKTFARKVDHRATDEEPIPLCPLLWPVARQVASAANDLGINDPCYRHQWWSAVELVESPLPDGFGRVVREDGTLAYRYPKSSETPGKIGTHPLLQDYMDKIDYDSKLSTSHLRRSSRDSRRTSGGQALAASHPIRCFVSCFRGDLTAIRR 1459
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BLAST of mRNA_H-paniculata_contig14952.2946.1 vs. uniprot
Match: A0A6H5KKJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ7_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.530e-28
Identity = 51/67 (76.12%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:  184 AANDLGINDPCYRHQWWTAVELVESPLPEGFSRVVKEDGTLAYRWPKASATPGKIGAHPRLEDFIAK 384
            AANDLGINDPCY HQWW+AVELVESPLP+GF RVV+EDGTLAYR+PK+  +PGKIG HP L+D++ K
Sbjct:  716 AANDLGINDPCYCHQWWSAVELVESPLPDGFGRVVREDGTLAYRYPKSLESPGKIGTHPLLQDYMDK 782
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14952.2946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMG7_ECTSI6.920e-9173.60Ankyrin repeat domain protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JIF4_9PHAE2.680e-8973.60Myosin motor domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KKJ7_9PHAE1.530e-2876.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14952contigH-paniculata_contig14952:250..4871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-05_000780.1
Exons5
Model size519
Cds size519
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14952.2946.1prot_H-paniculata_contig14952.2946.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14952 250..4871 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929195.8807962-CDS-H-paniculata_contig14952:249..3661622929195.8807962-CDS-H-paniculata_contig14952:249..366Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14952 250..366 +
1691480766.1246777-CDS-H-paniculata_contig14952:249..3661691480766.1246777-CDS-H-paniculata_contig14952:249..366Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14952 250..366 +
1622929195.896876-CDS-H-paniculata_contig14952:961..10181622929195.896876-CDS-H-paniculata_contig14952:961..1018Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14952 962..1018 +
1691480766.1359398-CDS-H-paniculata_contig14952:961..10181691480766.1359398-CDS-H-paniculata_contig14952:961..1018Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14952 962..1018 +
1622929195.9303122-CDS-H-paniculata_contig14952:1313..14201622929195.9303122-CDS-H-paniculata_contig14952:1313..1420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14952 1314..1420 +
1691480766.1444805-CDS-H-paniculata_contig14952:1313..14201691480766.1444805-CDS-H-paniculata_contig14952:1313..1420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14952 1314..1420 +
1622929195.942043-CDS-H-paniculata_contig14952:4090..41931622929195.942043-CDS-H-paniculata_contig14952:4090..4193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14952 4091..4193 +
1691480766.151902-CDS-H-paniculata_contig14952:4090..41931691480766.151902-CDS-H-paniculata_contig14952:4090..4193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14952 4091..4193 +
1622929195.9558485-CDS-H-paniculata_contig14952:4736..48711622929195.9558485-CDS-H-paniculata_contig14952:4736..4871Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14952 4737..4871 +
1691480766.1598635-CDS-H-paniculata_contig14952:4736..48711691480766.1598635-CDS-H-paniculata_contig14952:4736..4871Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14952 4737..4871 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14952.2946.1

>prot_H-paniculata_contig14952.2946.1 ID=prot_H-paniculata_contig14952.2946.1|Name=mRNA_H-paniculata_contig14952.2946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=173bp
DPSVILTWCIALCMVIPQAGLKPPLCQAQKTFARNIDHRASQEEPIPICP
LLWPIARQIAGAANDLGINDPCYRHQWWTAVELVESPLPEGFSRVVKEDG
TLAYRWPKASATPGKIGAHPRLEDFIAKIDYDSKLSTSHLRRSEPTVSKG
LATSHPIRCFVACFKGDLTSVRR
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mRNA from alignment at H-paniculata_contig14952:250..4871+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14952.2946.1 ID=mRNA_H-paniculata_contig14952.2946.1|Name=mRNA_H-paniculata_contig14952.2946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4622bp|location=Sequence derived from alignment at H-paniculata_contig14952:250..4871+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCCGAGCGTGATTCTAACGTGGTGCATAGCTCTGTGCATGGTCATTCC
TCAGGCGGGCTTGAAACCTCCGTTATGCCAGGCGCAGAAGACGTTTGCTC
GGAATATCGACCACAGGGTAGGTTGCCCTTGGCTGCTGCTTGTTTACGTA
CATAGCGTACAACCAGACGTGTCCTGTCCAAGGCGTTCCACGACCTTTGG
ATGATGACCTCGACACATGCGGAAATCTTGATTGCGATAACAAAACACGT
CTTTTGACATTTTGTTTTTTATGTTTTTGTTACTTCGTACTAGTAGTAGT
AGTAGTGTCTTTCCATTTGGACGTTTGTAAACATTTTTGTACACATTTTT
GTAAACGTGGAAGAATATGGCAAGCGTTGCTCGCGGAAGTGTTGCATAAT
GAGTCAATAACGACCAGACGTCAAGAGTGTGATGCGCCAGCGTAGAAGAG
GAACCCCAAGGTGTGCCGCAGTCGTTTGTCACTTTTCTGCGAAGGTGTAT
GTTAGGGGAGGGCAAACGGCGCTTAGTATTTTCGGGAAGTTCCGATTCGG
GGCGAAACGTCTTTCGTCGTAGATAACCTGAGGGCACTAAACCCCAGTAA
TAAATTGATGTACCCGATGTACTGTCATGCTCTGTTTGCAACGTTGAGAG
AAATCGCTCTTCTGGTCCTTGTTTCCAAATGATTGATTGTGCGTTTGTTT
TGCGGGCGTCAGGCGTCGCAGGAGGAGCCCATCCCGATCTGCCCTCTCCT
TTGGCCTATCGCGCGACAGGTGACGCGAAGAGTTGCGGGGGATTTTCGAG
GGGGTTCTCATGTACTGCGTACCCTCGTTCTTCGATCATGTATTGCGTAC
TTTATACTACTACATTGAAGTACGGTTGGGGTACATGAACCCAGTGTCAA
GACGCGATCCAGAAGTTTTCAGGAATGTTGCGACCTGGAACGGGTTGTAT
CTTGTGTGCCGTGCCCGTAGCACGCTTTGCTCTGCCAATACTACTTGCGG
AGTGTTTGCATCTGGTTCTGTTCGTGTGTGTTTGTGTGTGTCTTTTTGTT
GGTGCCACGAACAGATTGCTGGCGCTGCGAACGACCTAGGCATTAACGAT
CCTTGCTATCGCCATCAGTGGTGGACTGCCGTTGAGCTCGTGGAGTCTCC
GCTCCCAGAAGGATTCTCCAGGTTTGACCATTGTGTGTATTTTTTGTCAT
ATCCCAGTGTATTTGTAAAGCTTCCCTCCGGTGTTTGGTTTCTTGTGTGA
AGTCACATGAGATTTTATCTCAACTTGAGGAAGGACGTGAGGAATAAGAG
CTGTGTATTACTAGTTCTTCTGTGCCTGTTGTTTTTTACGTTGGTCCTTC
ACTTTTTCACAAGTTAAGACGCGACCTTATGGCTTCAAGCTGGCAGGGGG
TGCTTGTGTTGTACTTTGTAAGGTTGGCTGTCGTACTGCAGTGTTTTTGT
CGTGGTGTACGTGTATGTTCTTGTGATACCCTGTACCTGGATGCGCGCCA
AACCAAGTCCCTGCCTGCCTGTCTGTTGTGTTTGTCACAATCAGCCAGAA
TACAGCAGTTGAGCTATGTCGAACAAAGGGTGTACCGGTACACGTGCGAC
AAACGGGCTTGGCAGAGATATGTCATGAAGGTTTACGTCATTTGGCCGAC
TGCTTTGAGCTCATTTCATGCGCCATACTTTGAGATCTGGGTGGAGTGTT
GCTATTAGGGAAGAACCGCCTGTCAACTCAGCTTCTACCTGAGACTTGGG
ATGATTGTGCTAGCGCAGAGAGCTATGTGCGTGAGTTCAACACGATGTAT
GGCCTACTGGGGTTCAGCCGTATCGATTTTACTCGTTTATTTCTGTCTTG
TAGTCTATTTAGTCATGCTCCGATATTTTTTTTTGTTTTACGTGGTTTGT
TTAACGCTTGTTGTAAAAGATGGCGCTGCTAGTCAAGTGCCCACTCTGCG
GCAAGGTCTCGTGTGCGGACCCGCTGTCGTTATTTAGCTTTGGTTCATGT
GTATTTGGCTCTTCACATTTCCCGTGTTTCTTTTGAACTGGTGCTGGATC
CTTCCCCCCTTTGACCTGGGCCACGATTCGTCACTAACAGGCAGGCCATG
GGAACGCCGTTGTGGGGTACTATCGAATACAGACCACCCCCTTAAAGTAT
TAGCTCACCTGCAGTGTGACAGTAGAATATGCATACTACTGCGGAAAAAC
ATTATAATCGAGAGCAAATTAGAAAATTGACATTTTGAGGTGTAACTCAT
GCAATACAATATGCACCAATCGGTTGCTGCATACCCGTGCAAGTGTTTTT
AGAGTGTGTTTTTGTTTTCAGCTAGAAGCCAACATCTGTACACCAAAGGG
GAAAAAAAAAAATAGTTTCCGAAAAAACAAAAAAAATGCTCCTGATTATT
ATGTTCCTCCGTAATAGACCACAGTCCGGCATTTAGTGCCTTTGTTATCC
CGACCTTCCTAATCTAGCACTCACGTCGCAATACCTGAACTACACCCCCC
GTCACCCCTCGGTACCACCCTAGCCTCTATGAAATGGAAAGATCACCGTT
GGTGCCACGGCTCCTGCTTTCGAGCTATTGTACCGCTACGAACGACAGTC
AATTTCTCGGCATCCCGAATCGAAGGGCCCTCTTCCATTCTCCCCCAATT
TTCCCACCCCCCAATGTCCGCGCGTGCGCACGCTACAATATAGCGACCTG
CCCGAGCTCTCCCATGTGCTCGCCTTGATGATCTGTTGGATAAGGATATA
AAGGGTAAATTCCTGGCTCTTGAACGGGCTTCGCACCATGGCCAACTTGT
AGGACATGCACCCCAGGGACCACACGTGTGTTTTCCATCCGTACGCCTCG
CCTTTTAGGACCTCCGGCGACATGTAAAGTGGCGTGCCTACCTGCAAGAT
GTCACTCACACACACACATACACATGTGGCAGTCGCACGTCATATACAAG
TTGGCGTCCCATTCACCTGTGTGCTCGGCAACGCGGGTCTTGCTTCGTTT
TCCATAGCAGACGCGCAAAAGTTTTGGGCAGAGTGCAAACGTTAGCCTAT
CCGCTCTACTTGTACTTGTATGCTACCCTCAAACGTTAAAACGTTCATAC
AGACAGGATAGCCGTTTTCAAGGAAATTTCTCACTTCGCAGACAAAGCAT
AGATGGACATGGATCCTCATAAGATATGGCCGGGCCAAACTACTTCTGGT
AACATTTTTTGGAGTCTACGATAGAGGTAGCCTTTGAAAGTCCCCCCCCC
CAATGCATTAGCACATGATACCACAGCCGGCGAAAGTACCTAGTCCCGTA
TCTTCAACCTTGACCTATACGACATGGTGGGGAGTTGTCGAATACAGACC
ACCCACTCCAACTGTGTTTGTGTGACGTTACACCTCTGTCAAAAACACTT
GGATTTAGTGTGGAAATTGTTCCAAGAGAACCCTCAGGATGATCGTAGTC
ACCAATTGTATTTTTACTGTTTGAGAAACTTGCGACCCCTCTTGAATTAG
CCGTGGAGTACTTGTTTGTTCTATAACGACGGGAAAAGAGCCAAAAAAAA
AAAAGAACCTCTTTTATCGCTTTACACTGGAGTAAAGCCGAGATTCAAAA
ATTCCACCAACCGACAACAAAGGGACCCCTGTTGGCAACTTGGATGCACT
AGAATAGCCACCTGCCTAAAAGAAGCTGGAACATGATTATTCTGGCGACG
CATTCCTCATTATTCATGACTTGTTGGTTGGCAAATATTGTCATAGACCC
TTGCAAAATCTGGTTCCTGAAGGATGTAAGTAAATGAGTTTTTATTTTTA
TCTTTATTTTGTGGTGGTGGTGGTGGTGGTGGTGGTGGCAGGGTCGTGAA
GGAGGATGGTACTTTGGCGTACCGTTGGCCGAAGGCGTCGGCTACCCCGG
GGAAGATCGGTGCGCATCCCCGCCTCGAGGACTTCATAGCGAAGGTGGGT
TCCTGAGTCGAAAGTTCTTGGTGCTTTGAAAAATATATATGTATGTGCAT
ATATATACATTTTTTTTATTAGACATAGAGTTACCCGAGAAAAGTGCCCG
TAAAACATGAAATAATGTGCGCTATATTGTGGGTCTCCTGTTGTAGGTTT
GCCCGCTGTTAAAGGTCTTCAATTAACTCGTGTCACCAAAAATTGAGTGC
TCTTGAGTAGGCCTGTTGGCAGATGGGAGCGAAGTGCGGACTGTATTCTC
AACTTGTTTTTGTGCTTTTCGTTGAAATTGTCGCTGAACTATGCTCGAAG
GGCGTGTTCAGTAAGTAGTAGCCTGGCTATGTGCTGTTTGCGAGCTTCTG
TCTTGTTGAGAAGATCATGTAGCTTAACAATGTTTCATTTCGTTTCGTCT
CGCCAGATGGCATCAGTATGAGCTGTGTTGGGTTAGATTCGGCTGGGGAA
CGCCTAAGCCCTTGTTCACCGTCTCTATCTGTCCCTTGTCAAAGTCGTTT
TTTGCGTTTCACACTTTTGTTTTTCAACGCTTGGTAGATCGACTACGACA
GCAAGCTCTCCACGTCTCATCTACGGAGATCAGAGCCCACGGTGAGCAAG
GGGCTGGCTACGTCGCACCCCATCCGTTGCTTCGTGGCCTGCTTCAAGGG
AGACCTCACGTCTGTGCGGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig14952:250..4871+

>mRNA_H-paniculata_contig14952.2946.1 ID=mRNA_H-paniculata_contig14952.2946.1|Name=mRNA_H-paniculata_contig14952.2946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at H-paniculata_contig14952:250..4871+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCCGAGCGTGATTCTAACGTGGTGCATAGCTCTGTGCATGGTCATTCC
TCAGGCGGGCTTGAAACCTCCGTTATGCCAGGCGCAGAAGACGTTTGCTC
GGAATATCGACCACAGGGACCCGAGCGTGATTCTAACGTGGTGCATAGCT
CTGTGCATGGTCATTCCTCAGGCGGGCTTGAAACCTCCGTTATGCCAGGC
GCAGAAGACGTTTGCTCGGAATATCGACCACAGGGCGTCGCAGGAGGAGC
CCATCCCGATCTGCCCTCTCCTTTGGCCTATCGCGCGACAGGCGTCGCAG
GAGGAGCCCATCCCGATCTGCCCTCTCCTTTGGCCTATCGCGCGACAGAT
TGCTGGCGCTGCGAACGACCTAGGCATTAACGATCCTTGCTATCGCCATC
AGTGGTGGACTGCCGTTGAGCTCGTGGAGTCTCCGCTCCCAGAAGGATTC
TCCAGATTGCTGGCGCTGCGAACGACCTAGGCATTAACGATCCTTGCTAT
CGCCATCAGTGGTGGACTGCCGTTGAGCTCGTGGAGTCTCCGCTCCCAGA
AGGATTCTCCAGGGTCGTGAAGGAGGATGGTACTTTGGCGTACCGTTGGC
CGAAGGCGTCGGCTACCCCGGGGAAGATCGGTGCGCATCCCCGCCTCGAG
GACTTCATAGCGAAGGGTCGTGAAGGAGGATGGTACTTTGGCGTACCGTT
GGCCGAAGGCGTCGGCTACCCCGGGGAAGATCGGTGCGCATCCCCGCCTC
GAGGACTTCATAGCGAAGATCGACTACGACAGCAAGCTCTCCACGTCTCA
TCTACGGAGATCAGAGCCCACGGTGAGCAAGGGGCTGGCTACGTCGCACC
CCATCCGTTGCTTCGTGGCCTGCTTCAAGGGAGACCTCACGTCTGTGCGG
AGGATCGACTACGACAGCAAGCTCTCCACGTCTCATCTACGGAGATCAGA
GCCCACGGTGAGCAAGGGGCTGGCTACGTCGCACCCCATCCGTTGCTTCG
TGGCCTGCTTCAAGGGAGACCTCACGTCTGTGCGGAGG
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