mRNA_H-paniculata_contig1494.2941.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1494.2941.1
Unique NamemRNA_H-paniculata_contig1494.2941.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1494.2941.1 vs. uniprot
Match: A0A6H5KK08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK08_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 7.420e-15
Identity = 44/98 (44.90%), Postives = 59/98 (60.20%), Query Frame = 1 
Query:    1 MQRARVEPEHATEAVETVHSGRMTYRAAADTFGISVGSLQKRVCGIVGIAGMVDSGTVLSTEEEKCLEDTMKFATARHVGLNRDDLKEVAMVLCSDNR 294
            M RARV+PE A +A++ V SG M++R AADT+G++  SL +RV   V I   V  GTVL  EEE  +ED +  A    + L R +LKE    +C D R
Sbjct:    1 MGRARVDPERAQKAIDAVRSGEMSFRVAADTYGLNPTSLHRRVKKEVAIDARVGPGTVLCKEEEDFVEDVLMHAFRHFLLLGRGELKEAVRKICLDGR 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1494.2941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KK08_9PHAE7.420e-1544.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1494contigH-paniculata_contig1494:11942..12235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929195.2441993-CDS-H-paniculata_contig1494:11941..122351622929195.2441993-CDS-H-paniculata_contig1494:11941..12235Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1494 11942..12235 +
1691480765.778353-CDS-H-paniculata_contig1494:11941..122351691480765.778353-CDS-H-paniculata_contig1494:11941..12235Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1494 11942..12235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1494.2941.1prot_H-paniculata_contig1494.2941.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1494 11942..12235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1494.2941.1

>prot_H-paniculata_contig1494.2941.1 ID=prot_H-paniculata_contig1494.2941.1|Name=mRNA_H-paniculata_contig1494.2941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp
MQRARVEPEHATEAVETVHSGRMTYRAAADTFGISVGSLQKRVCGIVGIA
GMVDSGTVLSTEEEKCLEDTMKFATARHVGLNRDDLKEVAMVLCSDNR
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mRNA from alignment at H-paniculata_contig1494:11942..12235+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1494.2941.1 ID=mRNA_H-paniculata_contig1494.2941.1|Name=mRNA_H-paniculata_contig1494.2941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=294bp|location=Sequence derived from alignment at H-paniculata_contig1494:11942..12235+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGAGAGCAAGGGTGGAGCCAGAACATGCAACAGAGGCCGTTGAAAC
GGTACACAGCGGTCGCATGACCTACCGTGCTGCTGCTGACACCTTTGGTA
TCTCTGTTGGTTCGCTGCAGAAGCGTGTCTGTGGTATTGTAGGCATAGCT
GGCATGGTTGACTCGGGTACTGTACTGTCGACAGAGGAAGAAAAGTGTCT
CGAAGACACAATGAAATTTGCTACAGCTCGACACGTTGGCCTGAATAGAG
ATGACCTGAAAGAGGTGGCTATGGTACTCTGCAGCGACAACCGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1494:11942..12235+

>mRNA_H-paniculata_contig1494.2941.1 ID=mRNA_H-paniculata_contig1494.2941.1|Name=mRNA_H-paniculata_contig1494.2941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig1494:11942..12235+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGAGAGCAAGGGTGGAGCCAGAACATGCAACAGAGGCCGTTGAAAC
GGTACACAGCGGTCGCATGACCTACCGTGCTGCTGCTGACACCTTTGGTA
TCTCTGTTGGTTCGCTGCAGAAGCGTGTCTGTGGTATTGTAGGCATAGCT
GGCATGGTTGACTCGGGTACTGTACTGTCGACAGAGGAAGAAAAGTGTCT
CGAAGACACAATGAAATTTGCTACAGCTCGACACGTTGGCCTGAATAGAG
ATGACCTGAAAGAGGTGGCTATGGTACTCTGCAGCGACAACCGAATGCAG
AGAGCAAGGGTGGAGCCAGAACATGCAACAGAGGCCGTTGAAACGGTACA
CAGCGGTCGCATGACCTACCGTGCTGCTGCTGACACCTTTGGTATCTCTG
TTGGTTCGCTGCAGAAGCGTGTCTGTGGTATTGTAGGCATAGCTGGCATG
GTTGACTCGGGTACTGTACTGTCGACAGAGGAAGAAAAGTGTCTCGAAGA
CACAATGAAATTTGCTACAGCTCGACACGTTGGCCTGAATAGAGATGACC
TGAAAGAGGTGGCTATGGTACTCTGCAGCGACAACCGA
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