mRNA_H-paniculata_contig14930.2936.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14930.2936.1
Unique NamemRNA_H-paniculata_contig14930.2936.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14930.2936.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 282 bits (721), Expect = 4.430e-85
Identity = 156/425 (36.71%), Postives = 252/425 (59.29%), Query Frame = 1
Query:    1 TSAPVAR-RSMRTVFSLVAEYDFELEGMDVDAAYLNAPVEEELFVKLPSEFPPFSGDIPIVRRLHKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYYSRDDGGETDTLVGVYVDDLVIAGRR-EKVDEFKHSISQRFRTKDLGFLSRVLGIEIRLDRPNGTITTS*GNYIREVLKRYGFDECRGVPTLVEGKVK-ISAPDKGRSGTSTEYGGIVRSLMYASTGTRPDIAYAVHQAARRMEDPCRKYFSTCKRIFRYLITLPDLGITFGGKSTGHGLEGFVDADWAEDVKDRKSTTGYIFKLNGGAIS*CSRKQQLVMWSSIETEYVAAGEAGKETVYLRGLLGSIGFGCRGSTTLFEDNKSAINLSKGSGTHCKTKHIGMH*QRIREWIREGVLALKYAQAGDQLADILTKGLSRVRFQR 1266
            T +PV R  S+RTV +L  +   +L  MDV AA+LN  +E+E+++K P  F    G   +  +L+KSLYGLKQS R WN+ LD+ L  IG  ++ ++ C+Y   +DG     +V ++VDD+++AG+  EK+ + K SI++RF+ KD+G L  +LG+++  +  +  +      Y   ++K+YG + C+ V T V+   K +SA +        E+   V SL+Y S+ TRPDI +AV+  A+   +P  ++++  KRIFRYL    + G+ +  ++      GF DADWA D+ DRKST+GY F++NG A+S  S+KQ  V  S+   EYVA   A +E +++R LL  +        T++EDN+SAI +SK    H ++KHI +    +R+ + +  L + Y   G  LAD+ TKG+ + +F++
Sbjct:  229 TFSPVVRFESIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFE-VKGKEHLACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGNIF--VVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYS-ENANPDCVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAAAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYYFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKK 647          
BLAST of mRNA_H-paniculata_contig14930.2936.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT)

HSP 1 Score: 279 bits (714), Expect = 1.100e-83
Identity = 162/425 (38.12%), Postives = 249/425 (58.59%), Query Frame = 1
Query:    1 TSAPVAR-RSMRTVFSLVAEYDFELEGMDVDAAYLNAPVEEELFVKLPSEFPPFSGDIPIVRRLHKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYYSRDDGGETDTLVGVYVDDLVIAGRRE-KVDEFKHSISQRFRTKDLGFLSRVLGIEIRLDRPNGTITTS*GNYIREVLKRYGFDECRGVPTLVEGKVKIS-APDKGRSGTSTEYGGIVRSLMYASTGTRPDIAYAVHQAARRMEDPCRKYFSTCKRIFRYLITLPDLGITFGGKSTGHGLEGFVDADWAEDVKDRKSTTGYIFKLNGGAIS*CSRKQQLVMWSSIETEYVAAGEAGKETVYLRGLLGSIGFGCRGSTTLFEDNKSAINLSKGSGTHCKTKHIGMH*QRIREWIREGVLALKYAQAGDQLADILTKGLSRVRFQR 1266
            T +PVAR  S+RTV +L A++  +L  MDV  A+LN  ++EE+++K    F    G   +V RL +S+YGLKQS R WN+ LD  L  +G  ++T + C+Y  +++GGE   ++ VYVDD+++AG+ + K++E K +++++F+ KD+G L   LG+++     +  I      Y + VL+R+G +  +   T V    K+  A D  +      Y   V  L+Y ST TRPDIAYAV   AR   DP  +++   KRI RYL    D+G+ + G  T     G+ DADWA D+ DRKST+GY+F+++  AIS  S+KQ  V  S+ E EY+A   A +E V+L+ LL  +     G   + EDN++AI ++K +  H + KHI +    IRE +    + L+Y    + +ADI TKGLS V+F +
Sbjct:   65 TFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQTEGFIE-KGKEHLVCRLRRSIYGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQLHYFLGVKVIPKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSADPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMALASATQEAVWLQQLLSDLKSKPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADIFTKGLSVVQFTK 486          
BLAST of mRNA_H-paniculata_contig14930.2936.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 286 bits (731), Expect = 9.430e-83
Identity = 158/425 (37.18%), Postives = 253/425 (59.53%), Query Frame = 1
Query:    1 TSAPVAR-RSMRTVFSLVAEYDFELEGMDVDAAYLNAPVEEELFVKLPSEFPPFSGDIPIVRRLHKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYYSRDDGGETDTLVGVYVDDLVIAGRR-EKVDEFKHSISQRFRTKDLGFLSRVLGIEIRLDRPNGTITTS*GNYIREVLKRYGFDECRGVPTLVEGKVK-ISAPDKGRSGTSTEYGGIVRSLMYASTGTRPDIAYAVHQAARRMEDPCRKYFSTCKRIFRYLITLPDLGITFGGKSTGHGLEGFVDADWAEDVKDRKSTTGYIFKLNGGAIS*CSRKQQLVMWSSIETEYVAAGEAGKETVYLRGLLGSIGFGCRGSTTLFEDNKSAINLSKGSGTHCKTKHIGMH*QRIREWIREGVLALKYAQAGDQLADILTKGLSRVRFQR 1266
            T +PV R   +RTV +L  +   +L  MDV AA+LN  +E+E+++K P  F    G   +V +L+KSLYGLKQS R WN+ LD+ L  IG  ++ ++ C+Y   +DG     +V ++VDD+++AG+  EK+ + K SI++RF+ KD+G L  +LG+++  +  +  +      Y   ++K+YG + C+ V T V+   K +SA +        EY   V SL+Y S+ TRPDI +AV+  A+   +P  ++++  KRIFRYL    + G+ +  ++      GF DADWA D+ DRKST+GY F++NG A+S  S+KQ  V  S+ E EYVA   A +E +++R LL  +        T++EDN+SAI +SK    H ++KHI +    +R+ + +  L + Y   G  LAD+ TKG+ + +F++
Sbjct:  843 TFSPVVRFEKIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFE-VKGKEHLVCKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGDIF--VVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAIEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYS-ENANPDCVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADLFTKGIPKEQFKK 1261          
BLAST of mRNA_H-paniculata_contig14930.2936.1 vs. uniprot
Match: A0A6S7JEY7_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JEY7_PARCT)

HSP 1 Score: 273 bits (697), Expect = 1.090e-81
Identity = 159/425 (37.41%), Postives = 246/425 (57.88%), Query Frame = 1
Query:    1 TSAPVAR-RSMRTVFSLVAEYDFELEGMDVDAAYLNAPVEEELFVKLPSEFPPFSGDIPIVRRLHKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYYSRDDGGETDTLVGVYVDDLVIAGRRE-KVDEFKHSISQRFRTKDLGFLSRVLGIEIRLDRPNGTITTS*GNYIREVLKRYGFDECRGVPTLVEGKVKIS-APDKGRSGTSTEYGGIVRSLMYASTGTRPDIAYAVHQAARRMEDPCRKYFSTCKRIFRYLITLPDLGITFGGKSTGHGLEGFVDADWAEDVKDRKSTTGYIFKLNGGAIS*CSRKQQLVMWSSIETEYVAAGEAGKETVYLRGLLGSIGFGCRGSTTLFEDNKSAINLSKGSGTHCKTKHIGMH*QRIREWIREGVLALKYAQAGDQLADILTKGLSRVRFQR 1266
            T +PVAR  S+RTV +L A++  +L  MDV  A+LN  ++EE+++K P  F    G   +V RL +S+ GLKQS R WN+ LD  L  +G  ++T + C+Y  +++GGE   ++ VYVDD+++AG+ + K++E K +++++F+ KD+G     LG+++     +  I      Y + VL+R+G +  +   T V    K+  A D  +      Y   V  L+Y ST TRPDIAYAV   AR    P  +++   KRI RYL    D+G+ + G  T     G+ DADWA D+ DRKST+GY+F+++  AIS  S+KQ  V  S+ E EY+    A +E V+L+ LL  +     G   + EDN++AI ++K +  H + KHI +    IRE +    + L+Y    + +ADI TKGLS V+F +
Sbjct:  213 TFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQPEGFID-KGKEHLVCRLRRSICGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQRHYFLGVKVIQKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLKKAADDSQRVDQVNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSAHPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMTLASATQEAVWLQQLLSDLKSKPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADIFTKGLSVVQFTK 634          
BLAST of mRNA_H-paniculata_contig14930.2936.1 vs. uniprot
Match: A0A4Y9ZJA2_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZJA2_9AGAM)

HSP 1 Score: 283 bits (723), Expect = 2.170e-81
Identity = 169/424 (39.86%), Postives = 239/424 (56.37%), Query Frame = 1
Query:    1 TSAPVAR-RSMRTVFSLVAEYDFELEGMDVDAAYLNAPVEEELFVKLPSEFPPFSGDIPIVRRLHKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYYSRDDGGETDTLVGVYVDDLVIAGRR-EKVDEFKHSISQRFRTKDLGFLSRVLGIEIRLDRPNGTITTS*GNYIREVLKRYGFDECRGVPTLVEGKVKISAPDKGRSGTSTEYGGIVRSLMYASTGTRPDIAYAVHQAARRMEDPCRKYFSTCKRIFRYLITLPDLGITFGGKSTGHGLEGFVDADWAEDVKDRKSTTGYIFKLNGGAIS*CSRKQQLVMWSSIETEYVAAGEAGKETVYLRGLLGSIGFGCRGSTTLFEDNKSAINLSKGSGTHCKTKHIGMH*QRIREWIREGVLALKYAQAGDQLADILTKGLSRVRFQR 1266
            T APV +  S+RT+ +L A++D EL  MDV  AYLN  +EEE++++ P   P F GD  IV RL KS+YGLKQ+GR W   ++     +G  RS  +  ++    D   T  ++ +YVDD+  A    E + + K  +S+ F   DLG +  +LG+E+  DR    +T S   YI +VL+R+GF + R + T V    K+          + +Y   V SLMYA  GTRPDIAYAV   ++    P  ++++   R F+YL    D  + + GK     L G+VD+DWA D  DR+S +GY+F L G AIS  S+KQQ V  SS E EY+AA  A KE V+LR LL  +       T L  DN+ AI L+K    H  TKHI +    +R+ + +G +A +Y    DQ+AD+LTKGLSR +  R
Sbjct:  978 TFAPVMKFNSLRTLLALTAKHDLELHQMDVKTAYLNGDLEEEIYMEPP---PGFRGDGNIVWRLIKSIYGLKQAGRVWYMRIEREFRDLGYSRSYADYGVFVFHRDSDGTLLIIIIYVDDIGAASNSMEAILQAKARLSKIFEITDLGEMRWILGMEVTRDRALKIVTLSQKRYIADVLERHGFADARPISTPVSVNQKLEKLPAAEI-DARKYQSAVGSLMYAMLGTRPDIAYAVGLLSQHSSAPGAEHWNVAARTFKYLRRTADYQLVYNGKRKNDELTGYVDSDWANDPNDRRSISGYVFTLAGAAISWSSKKQQSVAQSSTEAEYMAAAHATKEAVWLRMLLSDLRQPIERPTPLLIDNQGAIALAKNPAYHACTKHIDVRHHFLRDKVEDGTIAAEYIPTADQVADVLTKGLSREKHDR 1397          
BLAST of mRNA_H-paniculata_contig14930.2936.1 vs. uniprot
Match: A0A7M6DPI8_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M6DPI8_9CNID)

HSP 1 Score: 281 bits (718), Expect = 6.620e-81
Identity = 159/427 (37.24%), Postives = 245/427 (57.38%), Query Frame = 1
Query:    7 APVAR-RSMRTVFSLVAEYDFELEGMDVDAAYLNAPVEEELFVKLPSEFPPFSGDIP-IVRRLHKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYYSRDDGGETD--TLVGVYVDDLVIAGRREKV-DEFKHSISQRFRTKDLGFLSRVLGIEIRLDRPNGTITTS*GNYIREVLKRYGFDECRGVPTLVEGKVKISA-PDKGRSGTSTEYGGIVRSLMYASTGTRPDIAYAVHQAARRMEDPCRKYFSTCKRIFRYLITLPDLGITFGGKSTGHGL-EGFVDADWAEDVKDRKSTTGYIFKLNGGAIS*CSRKQQLVMWSSIETEYVAAGEAGKETVYLRGLLGSIGFGCRGSTTLFEDNKSAINLSKGSGTHCKTKHIGMH*QRIREWIREGVLALKYAQAGDQLADILTKGLSRVRFQR 1266
            APVA+  S+R+V ++  E D EL  MDV  A+LN  +EE++F+K P  F   + D P +  +L KS+YGLKQS R WN  +D+FL   G  R+  + C+Y+ +   G+     +V VYVDDL+IA    ++  E K  + +RF  +D   +  +LG++++ DR N  +T     ++  VL R+  +EC+ V T +E  +K     D        +Y   +  L YAS GTRPDI+ AV   ++ M  P ++++   KR+ RYL    D G+ + G  +G  L  GF DADWA D+  RKST+GY+FK+    +S  S++Q +V  S  E EYVA  +A +E ++LR L   + F     T +FEDN+ AI L+K    H +TKHI +    +R+ + + V+ L+Y    + +AD+LTKGL R +F++
Sbjct:  861 APVAKYNSIRSVLAITNELDLELHQMDVKTAFLNGDLEEDIFMKQPEGF--INRDNPNMACKLQKSIYGLKQSARCWNEKMDEFLKESGFTRNDADPCIYHKQITKGDKSFTLIVAVYVDDLLIACNNIQILREQKQKLGERFEMEDKSEVHFILGMQVKRDRKNRRLTIDQNAFLSSVLNRFNMNECKPVATPLEPSMKFEKLADDEEIVKLKDYQSAIGCLTYASIGTRPDISAAVGVLSQHMSKPGKQHWIGVKRVLRYLKGTLDYGLIYEGSESGDILLHGFADADWAGDIDTRKSTSGYVFKVGNSTVSWKSKRQSIVALSKTEAEYVALSQATQEVIWLRTLFKGMDFEQTDPTKMFEDNQGAIELAKNQPNHSRTKHIDIKFHHVRDAVAKKVIDLEYCPTDEMIADLLTKGLPRPQFEK 1285          
BLAST of mRNA_H-paniculata_contig14930.2936.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM)

HSP 1 Score: 268 bits (685), Expect = 6.850e-81
Identity = 162/432 (37.50%), Postives = 241/432 (55.79%), Query Frame = 1
Query:    1 TSAPVAR-RSMRTVFSLVAEYDFELEGMDVDAAYLNAPVEEELFVKLPSEFPPFSGDIPIVRRLHKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYYSRDDGGETDTLVGVYVDDLVIAGRREKVDEFKH---SISQRFRTKDLGFLSRVLGIEIRLDRPNGTITTS*GNYIREVLKRYGFDECRGVPTLVEGKVKI------SAPDKGRSGTSTEYGGIVRSLMYASTGTRPDIAYAVHQAARRMEDPCRKYFSTCKRIFRYLITLPDLGITFGGKSTGHGLEGFVDADWAEDVKDRKSTTGYIFKLNGGAIS*CSRKQQLVMWSSIETEYVAAGEAGKETVYLRGLLGSIGFGCRGSTTLFEDNKSAINLSKGSGTHCKTKHIGMH*QRIREWIREGVLALKYAQAGDQLADILTKGLSRVRFQR 1266
            T APVA+  S+R + +L A +D+EL  MDV  AYLN  +EEE+F+K P  FP   G    V  L K +YGLKQ+GR W   L    + +G  RS+ +  +++     GE   +V V VDDL IA     VDE  H   ++  +F   DLG +  +LG+EI+ DR   TI+     YI  +L R+   + + + T ++    +      S P +     +  Y   + SLMYA+ GTRPD++YAV   ++ M++P   ++   KR+ RYL    +  +T+GG +  +G+EGF DADW      R+S +GY+F ++GGA+S  S+KQ +V  SS E EYVA   A KE ++ R  LG I       TTL+ DN+SAI L+K +  H +TKHI +    IR+ +  G + + Y    D  AD+LTK L+R + ++
Sbjct:  113 TFAPVAKLSSIRILAALAARFDWELHQMDVKNAYLNGDLEEEIFMKQPPGFPT-PGQEQKVCHLFKPIYGLKQAGRRWYKKLCAAFLDMGFARSSVDHSVFFRHGPNGEI-AIVAVSVDDLAIAAN--SVDEMSHIKSALKLKFEMTDLGEIHWLLGLEIKRDRRGRTISMLQRAYIDTILSRFNLQDAKSLTTAIDPSFSLTTDQSPSTPQQYDDMRNILYREAIGSLMYAAIGTRPDVSYAVTALSQFMQNPGHPHWEAAKRVMRYLKGTKEEWLTYGGDNA-NGMEGFSDADWGSS-DHRRSISGYVFLIDGGAVSWSSKKQPIVALSSTEAEYVAMTHAAKEVLWTRAFLGEIISPFDKPTTLYADNQSAITLAKDNLYHARTKHIAIRFHFIRDIVERGEVDIVYCPTADMAADVLTKPLTRPKMEK 538          
BLAST of mRNA_H-paniculata_contig14930.2936.1 vs. uniprot
Match: A0A060S825_PYCCI (CCHC-type domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060S825_PYCCI)

HSP 1 Score: 280 bits (717), Expect = 1.680e-80
Identity = 173/428 (40.42%), Postives = 249/428 (58.18%), Query Frame = 1
Query:    1 TSAPVAR-RSMRTVFSLVAEYDFELEGMDVDAAYLNAPVEEELFVKLPSEFPPFSGDIPIVRRLHKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYYSRDDGGETDTLVGVYVDDLVIAGRREKVDEFKHSISQRFRTKDLGFLSRVLGIEIRLDRPNGTITTS*GNYIREVLKRYGFDECRGVPT-LVEGKVKI-----SAPDKGRSGTSTEYGGIVRSLMYASTGTRPDIAYAVHQAARRMEDPCRKYFSTCKRIFRYLITLPDLGITFGGKSTGHGLEGFVDADWAEDVKDRKSTTGYIFKLNGGAIS*CSRKQQLVMWSSIETEYVAAGEAGKETVYLRGLLGSIGFG--CRGSTTLFEDNKSAINLSKGSGTHCKTKHIGMH*QRIREWIREGVLALKYAQAGDQLADILTKGLSRVR 1257
            T APVA+  S+RT+ +L A YD+ELE M+V +AYLN  ++EE++++ P    P +G   +V  L K+LYGLKQ+GR W  TL + +  +G  R  ++  ++Y R   G++  +V   VD L IAG R+ V +FK +IS RF   DLG +  +LGIE++ DR   TI  S   YI  V  R+  +    V T L  G V       S P +    ++  Y   V SLMYA  GTRPDIA+AV   ++ M++P R ++   KR+ RYL+   +L + +G  ++  G++GF DADW    + R S +GY+F L+GGAIS  S+KQ +V  SS E EY+A   A KE ++LR LL  I      R   TLF DN+SAI L+K +  H +TKHI +    IRE + +  + L++ +  D  AD+ TK L R R
Sbjct: 1047 TFAPVAKLSSIRTILALAARYDWELEQMEVKSAYLNGRLDEEIYMRQPPGSAP-AGLEHLVCCLKKTLYGLKQAGRGWYKTLSNRMAEMGFTRCASDHAVWYKR--AGDSIVIVASSVDHLTIAGTRDFVMDFKSAISARFEMSDLGAMRWILGIEVQRDRQARTIAISQRTYIDTVAARFNLETANPVSTPLQPGGVLTRSQSPSTPHQVADMSNVPYREAVGSLMYAVMGTRPDIAFAVTTLSQFMQNPGRAHWEAVKRVIRYLVGTRELWLVYG--TSDDGIQGFSDADWGSSTEHRHSISGYVFTLDGGAISWSSKKQNVVALSSTEAEYIALTHAAKEALWLRYLLSDIIHPDISRYPLTLFSDNRSAIALAKDNAFHPRTKHIDIRFHFIREAVDDEKIILQHRRTEDMPADLFTKALPRSR 1469          
BLAST of mRNA_H-paniculata_contig14930.2936.1 vs. uniprot
Match: A0A2P6P3Z1_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6P3Z1_ROSCH)

HSP 1 Score: 265 bits (677), Expect = 3.060e-80
Identity = 160/427 (37.47%), Postives = 231/427 (54.10%), Query Frame = 1
Query:    4 SAPVARRSMRTVFSLVAEYDFELEGMDVDAAYLNAPVEEELFVKLPSEFPPFSGDIPIVRRLHKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYYSRDDGGETDTLVGVYVDDLVIAGR-REKVDEFKHSISQRFRTKDLGFLSRVLGIEIRLDRPNGTITTS*GNYIREVLKRYGFDECRGVPTLVEGKVKISAPDKGRSGTSTE------YGGIVRSLMYASTGTRPDIAYAVHQAARRMEDPCRKYFSTCKRIFRYLITLPDLGITFGGKSTGHGLEGFVDADWAEDVKDRKSTTGYIFKLNGGAIS*CSRKQQLVMWSSIETEYVAAGEAGKETVYLRGLLGSIGFGCRGSTTLFEDNKSAINLSKGSGTHCKTKHIGMH*QRIREWIREGVLALKYAQAGDQLADILTKGLSRVRFQ 1263
            S  V   S+R + S+ A+YD E+E MDV  A+L+  +EE++++  P  F   +G   +V RL KSLYGLKQS R W    D +++ IG  R   + C+YY   + GE   L+ +YVDD++IA +   K++E K  +   F  KDLG    +LGIEIR DR  G I  S   YI  VL+R+  D  + V   +    ++SA  +  S    +      Y   V  LMYA   TRPD+A A+   ++ M +P + ++   K I RYL     LGI F  K     + GFVDAD+A D+  R+STTGY+F   GG +S  S  Q +   S+ E EY+A  EA KE ++L GL    G    G      D++SAI+L+K    H +TKHI +   RIR+W+  G + ++     D  AD LTK ++  +F+
Sbjct:   68 SPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVE-TGKEDLVCRLRKSLYGLKQSPRQWYKRFDTYMLKIGYTRCLYDCCVYYHVFEDGEIILLL-LYVDDMLIACKDMSKIEELKKKLGAEFDMKDLGAAQNILGIEIRRDRKAGKIWLSQEKYILRVLERFNMDGAKVVSIPLAAHYQLSAKQRPSSQKEIDAMKDVPYASAVGCLMYAMICTRPDLAQALSVVSKYMSNPGKPHWEAVKWILRYLKGTRQLGIMFERKQEVACVAGFVDADYAGDLDKRRSTTGYVFTCGGGPVSWKSTLQAVTALSTTEAEYMALTEASKEAIWLNGLASEFGIHQEGVVVKC-DSQSAIHLAKNQVFHARTKHIDVRYHRIRDWVESGNIIVEKVHTNDNAADCLTKPVAVEKFK 491          
BLAST of mRNA_H-paniculata_contig14930.2936.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 270 bits (691), Expect = 3.620e-80
Identity = 169/430 (39.30%), Postives = 246/430 (57.21%), Query Frame = 1
Query:    1 TSAPVARRS-MRTVFSLVAEYDFELEGMDVDAAYLNAPVEEELFVKLP---SEFPPFSGDIPIVRRLHKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYYSRDDGGETDTLVGVYVDDLVIAGR-REKVDEFKHSISQRFRTKDLGFLSRVLGIEIRLDRPNGTITTS*GNYIREVLKRYGFDECRGVPTLVEGKV-KISAPDKGRSGTSTEYGGIVRSLMYASTGTRPDIAYAVHQAARRMEDPCRKYFSTCKRIFRYLITLPDLGITFGGKSTGH-GLEGFVDADWAEDVKDRKSTTGYIFKLNGG----AIS*CSRKQQLVMWSSIETEYVAAGEAGKETVYLRGLLGSIGFGCRGSTTLFEDNKSAINLSKGSGTHCKTKHIGMH*QRIREWIREGVLALKYAQAGDQLADILTKGLSRVR 1257
            T APVA  + +R V +L    D EL+ MDVD AYL + +EE++++K P    ++ P  G+  +V RL KSLYGLKQSGRNW+  +D +  G GL  S  + CLY      GE   +V +YVDDL+I    R   D+FK  IS+ F  KDL  L  +LG+ I+ +R N T+  S   YI  +L ++G  +C+ V T +EG + K+   D        EY  +V SL+YA+  TRPDIA+AV    + ++   ++++   KR+ RYL    D+G+ + G STG   L G+ DAD+A D  +R+ST+GY F L+ G     I   +++Q +V  SS E+E ++A  A +  VY+R LL  +GF     T + EDN++ I +     TH +TKHI +    +RE +    + L Y     QLADILTK LS +R
Sbjct:  277 TYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGE--LVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEILVIV-LYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEGTLTKMDGKDVK---PDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNKEHWIAAKRVLRYLKGTRDVGLKYTGNSTGSFTLVGYADADYAGDKDNRRSTSGYTFTLSHGDDVNTIDWKAKQQDVVALSSAESELISACSATQNAVYIRQLLMDLGFKQDEPTVIMEDNQACIAMGNNPITHKRTKHIDVRYHFVREKVESKEVELVYIPTQHQLADILTKPLSSIR 700          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14930.2936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9HZ03_PARCT4.430e-8536.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9KES8_PARCT1.100e-8338.12Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7HEL0_PARCT9.430e-8337.18Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7JEY7_PARCT1.090e-8137.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y9ZJA2_9AGAM2.170e-8139.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A7M6DPI8_9CNID6.620e-8137.24Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
A0A4Y9ZVS1_9AGAM6.850e-8137.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A060S825_PYCCI1.680e-8040.42CCHC-type domain-containing protein n=1 Tax=Pycnop... [more]
A0A2P6P3Z1_ROSCH3.060e-8037.47Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
W7TJ26_9STRA3.620e-8039.30Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14930contigH-paniculata_contig14930:3444..4787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue5.3e-25
Seed eggNOG ortholog164328.Phyra87462
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size1266
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14930.2936.1prot_H-paniculata_contig14930.2936.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14930 3471..3950 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929194.6260595-UTR-H-paniculata_contig14930:3443..34701622929194.6260595-UTR-H-paniculata_contig14930:3443..3470Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14930 3444..3470 +
1691480765.5190105-UTR-H-paniculata_contig14930:3443..34701691480765.5190105-UTR-H-paniculata_contig14930:3443..3470Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14930 3444..3470 +
1622929194.6577804-UTR-H-paniculata_contig14930:3950..40481622929194.6577804-UTR-H-paniculata_contig14930:3950..4048Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14930 3951..4048 +
1691480765.5405953-UTR-H-paniculata_contig14930:3950..40481691480765.5405953-UTR-H-paniculata_contig14930:3950..4048Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14930 3951..4048 +
1622929194.672348-UTR-H-paniculata_contig14930:4126..47871622929194.672348-UTR-H-paniculata_contig14930:4126..4787Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14930 4127..4787 +
1691480765.549533-UTR-H-paniculata_contig14930:4126..47871691480765.549533-UTR-H-paniculata_contig14930:4126..4787Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14930 4127..4787 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929194.6418595-CDS-H-paniculata_contig14930:3470..39501622929194.6418595-CDS-H-paniculata_contig14930:3470..3950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14930 3471..3950 +
1691480765.531037-CDS-H-paniculata_contig14930:3470..39501691480765.531037-CDS-H-paniculata_contig14930:3470..3950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14930 3471..3950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14930.2936.1

>prot_H-paniculata_contig14930.2936.1 ID=prot_H-paniculata_contig14930.2936.1|Name=mRNA_H-paniculata_contig14930.2936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=160bp
MRTVFSLVAEYDFELEGMDVDAAYLNAPVEEELFVKLPSEFPPFSGDIPI
VRRLHKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYYSRDDGGET
DTLVGVYVDDLVIAGRREKVDEFKHSISQRFRTKDLGFLSRVLGIEIRLD
RPNGTITTS*
back to top

mRNA from alignment at H-paniculata_contig14930:3444..4787+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14930.2936.1 ID=mRNA_H-paniculata_contig14930.2936.1|Name=mRNA_H-paniculata_contig14930.2936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1344bp|location=Sequence derived from alignment at H-paniculata_contig14930:3444..4787+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCAGTGCCCCTGTAGCTCGCAGGTCGATGCGTACTGTTTTTAGCCTGGT CGCCGAGTATGATTTCGAACTAGAAGGTATGGACGTAGATGCGGCGTATT TGAACGCCCCTGTAGAAGAAGAGCTCTTTGTTAAGCTACCCTCCGAGTTT CCCCCTTTCTCCGGTGACATACCTATTGTGCGTCGCCTGCATAAAAGCCT GTATGGCCTCAAGCAGAGCGGCCGAAACTGGAACAACACTCTTGACGATT TTCTTGTTGGGATAGGACTCGACCGTTCCACCACCAACTCATGCTTGTAC TATTCTCGCGATGATGGGGGAGAGACAGACACTCTCGTGGGCGTGTATGT TGACGACCTGGTAATTGCTGGTCGTCGTGAGAAAGTAGACGAGTTCAAGC ATAGCATCAGTCAGCGTTTTAGAACGAAAGACTTGGGTTTTCTTTCACGC GTGTTGGGAATAGAAATACGACTTGACCGCCCTAATGGTACGATAACCAC CTCGTAGGGTAACTACATCCGTGAGGTACTAAAAAGATACGGTTTTGACG AGTGTCGAGGGGTGCCCACCCTTGTAGAGGGAAAAGTGAAGATTTCGGCA CCCGAGTCGGCCAACAAGCCCTCCGAACCGAAGTTACTTGGAGTTGTACT GTTGGACATAGGCGCAGGAGTACAAGAAGGCAGCAAAGGAAGAAGTGGCA CTTCAACTGAATACGGAGGCATAGTAAGATCACTCATGTACGCCTCGACA GGAACTAGACCTGATATAGCATACGCGGTACACCAAGCAGCACGTCGTAT GGAAGACCCATGTCGGAAATACTTCAGTACATGCAAGCGCATTTTTCGTT ACCTCATTACTCTGCCTGACCTTGGTATTACGTTCGGCGGTAAGAGTACT GGTCACGGTCTGGAAGGATTCGTTGATGCCGATTGGGCGGAAGATGTCAA GGATCGAAAGTCCACAACAGGATACATTTTCAAACTAAACGGTGGTGCGA TAAGTTGATGCTCTAGGAAGCAACAGTTAGTCATGTGGTCCAGTATAGAG ACAGAGTACGTTGCTGCAGGAGAAGCGGGAAAGGAGACGGTATATCTTAG GGGGTTACTAGGATCGATAGGTTTCGGATGCAGGGGGAGCACGACATTGT TTGAGGACAATAAATCAGCTATTAATCTCAGTAAGGGATCTGGCACACAC TGCAAGACAAAGCACATCGGAATGCATTAGCAGAGAATTCGAGAGTGGAT TCGGGAAGGAGTATTGGCATTGAAATACGCGCAGGCCGGCGACCAACTTG CTGACATTTTAACGAAAGGGCTAAGCAGAGTGAGGTTTCAGAGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig14930:3444..4787+

>mRNA_H-paniculata_contig14930.2936.1 ID=mRNA_H-paniculata_contig14930.2936.1|Name=mRNA_H-paniculata_contig14930.2936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=960bp|location=Sequence derived from alignment at H-paniculata_contig14930:3444..4787+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTACTGTTTTTAGCCTGGTCGCCGAGTATGATTTCGAACTAGAAGG
TATGGACGTAGATGCGGCGTATTTGAACGCCCCTGTAGAAGAAGAGCTCT
TTGTTAAGCTACCCTCCGAGTTTCCCCCTTTCTCCGGTGACATACCTATT
GTGCGTCGCCTGCATAAAAGCCTGTATGGCCTCAAGCAGAGCGGCCGAAA
CTGGAACAACACTCTTGACGATTTTCTTGTTGGGATAGGACTCGACCGTT
CCACCACCAACTCATGCTTGTACTATTCTCGCGATGATGGGGGAGAGACA
GACACTCTCGTGGGCGTGTATGTTGACGACCTGGTAATTGCTGGTCGTCG
TGAGAAAGTAGACGAGTTCAAGCATAGCATCAGTCAGCGTTTTAGAACGA
AAGACTTGGGTTTTCTTTCACGCGTGTTGGGAATAGAAATACGACTTGAC
CGCCCTAATGGTACGATAACCACCTCGTAGATGCGTACTGTTTTTAGCCT
GGTCGCCGAGTATGATTTCGAACTAGAAGGTATGGACGTAGATGCGGCGT
ATTTGAACGCCCCTGTAGAAGAAGAGCTCTTTGTTAAGCTACCCTCCGAG
TTTCCCCCTTTCTCCGGTGACATACCTATTGTGCGTCGCCTGCATAAAAG
CCTGTATGGCCTCAAGCAGAGCGGCCGAAACTGGAACAACACTCTTGACG
ATTTTCTTGTTGGGATAGGACTCGACCGTTCCACCACCAACTCATGCTTG
TACTATTCTCGCGATGATGGGGGAGAGACAGACACTCTCGTGGGCGTGTA
TGTTGACGACCTGGTAATTGCTGGTCGTCGTGAGAAAGTAGACGAGTTCA
AGCATAGCATCAGTCAGCGTTTTAGAACGAAAGACTTGGGTTTTCTTTCA
CGCGTGTTGGGAATAGAAATACGACTTGACCGCCCTAATGGTACGATAAC
CACCTCGTAG
back to top