prot_H-paniculata_contig14930.2936.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig14930.2936.1
Unique Nameprot_H-paniculata_contig14930.2936.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length160
Homology
BLAST of mRNA_H-paniculata_contig14930.2936.1 vs. uniprot
Match: H3H934_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H934_PHYRM)

HSP 1 Score: 119 bits (297), Expect = 1.120e-29
Identity = 65/159 (40.88%), Postives = 100/159 (62.89%), Query Frame = 0
Query:    1 MRTVFSLVAEYDFELEGMDVDAAYLNAPVEEELFVKLPSEFPPFSGDIPI-VRRLHKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYYSRDDGGETDTLVGVYVDDLVIAGRREKV-DEFKHSISQRFRTKDLGFLSRVLGIEIRLDRPNGTIT 157
            +R V SL A+Y  +L  MDV  A+LN  ++E++++  P  +     D P  V +L +SLYGLKQS R WN T+DDF++ +G  +  ++ C+Y  RD  G+    V +YVDDLV+A   +++ +  KH++S+RF   DLG L   LG+EI+ DR +G +T
Sbjct:   78 IRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVT 232          
BLAST of mRNA_H-paniculata_contig14930.2936.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT)

HSP 1 Score: 121 bits (304), Expect = 1.540e-29
Identity = 65/155 (41.94%), Postives = 98/155 (63.23%), Query Frame = 0
Query:    4 VFSLVAEYDFELEGMDVDAAYLNAPVEEELFVKLPSEFPPFSGD-IPIVRRLHKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYYSRDDGGETDTLVGVYVDDLVIAGRR-EKVDEFKHSISQRFRTKDLGFLSRVLGIEIRLDRPNGTI 156
            +  L A+YD  +  MDV  A+L+AP++ E+F++ P  F   S + + +V RL KSLYGLKQSGRNWN  LD++L+  G  R+  + C+Y  +   GE   +V ++VDDL+IA    +K+ +FK ++  +FR KDLG +S  LGI  +  + NG I
Sbjct:  240 LMQLAAQYDLTVHQMDVKTAFLHAPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFVRNPVDHCVYQKQT--GEDIIIVVIWVDDLIIASSNTDKIRQFKENMKSKFRMKDLGEISYFLGISFK--QGNGVI 390          
BLAST of mRNA_H-paniculata_contig14930.2936.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 120 bits (302), Expect = 2.540e-29
Identity = 68/153 (44.44%), Postives = 94/153 (61.44%), Query Frame = 0
Query:    1 MRTVFSLVAEYDFELEGMDVDAAYLNAPVEEELFVKLPSEFPPF-SGDIPIVRRLHKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYYSRDDGGETDTLVGVYVDDLVIAGR-REKVDEFKHSISQRFRTKDLGFLSRVLGIEIRLDR 151
            +R V +L    D EL+ MDV+ AYL + +EE+++VK P  +  + S    +V RL KSLYGLKQSGRNW+  +D +  G G   S+ + CLY      GE   +V +YVDDL+I    RE V +FKH+IS+ F  KDL  L  +LG+ I+ DR
Sbjct:   67 IRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILVIV-LYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDR 218          
BLAST of mRNA_H-paniculata_contig14930.2936.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT)

HSP 1 Score: 121 bits (303), Expect = 5.440e-29
Identity = 64/158 (40.51%), Postives = 99/158 (62.66%), Query Frame = 0
Query:    1 MRTVFSLVAEYDFELEGMDVDAAYLNAPVEEELFVKLPSEFPPFSGD-IPIVRRLHKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYYSRDDGGETDTLVGVYVDDLVIAGRR-EKVDEFKHSISQRFRTKDLGFLSRVLGIEIRLDRPNGTI 156
            +R +  L A+Y+  +  MDV  A+L+ P++ E+F++ P  F   S + + +V RL KSLYGLKQSGRNWN  LD++L+  G  R+  + C+Y  +   GE   +V ++VDDL+IA    +K+ +FK ++  +FR KDLG +S  LGI  +  + NG I
Sbjct:  262 IRILMQLAAQYNLTVHQMDVKTAFLHVPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFIRNPVDHCVYQKQT--GEDIIIVVIWVDDLIIASSNTDKISQFKENMKSKFRMKDLGEISYFLGISFK--QGNGVI 415          
BLAST of mRNA_H-paniculata_contig14930.2936.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 117 bits (293), Expect = 5.640e-29
Identity = 66/154 (42.86%), Postives = 96/154 (62.34%), Query Frame = 0
Query:    1 MRTVFSLVAEYDFELEGMDVDAAYLNAPVEEELFVKLPSEFPPF--SGDIPIVRRLHKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYYSRDDGGETDTLVGVYVDDLVIAGR-REKVDEFKHSISQRFRTKDLGFLSRVLGIEIRLDR 151
            +R + ++    D EL+ MDVD AYL + +EE+++VK P  +     +G+  +V RL KSLYGLKQSGRNW+  +D +  G G   S+ + CLY      GE   +V +YVDDL+IAG  R+ VD+FK +IS+    KDL  L  +LG+ I+ +R
Sbjct:   67 IRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGE-ELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEMLVIV-LYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKELDWILGMAIKRNR 218          
BLAST of mRNA_H-paniculata_contig14930.2936.1 vs. uniprot
Match: A0A409WVI7_9AGAR (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409WVI7_9AGAR)

HSP 1 Score: 121 bits (303), Expect = 7.540e-29
Identity = 70/154 (45.45%), Postives = 94/154 (61.04%), Query Frame = 0
Query:    1 MRTVFSLVAEYDFELEGMDVDAAYLNAPVEEELFVKLPSEFPPFSGDIPIVR--RLHKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYYSRDDGGETDTLVGVYVDDLVIAGR-REKVDEFKHSISQRFRTKDLGFLSRVLGIEIRLDR 151
            +R + +L A++D EL+ MDV  AYLN  + E+L++      PP   DIP     +L KSLYGLKQ+GR WN T D  L  +G  R    +CLY  R +GG+   LV VYVDDL++A   R  +DE K  ++  F+ +DLG  S VLGI+IR DR
Sbjct: 1096 IRIILALAAKHDLELDQMDVQTAYLNGKLTEDLYL-----LPPDGVDIPKGHCWKLKKSLYGLKQAGRTWNKTFDSSLKDLGFTRLDAETCLYVMRGEGGKLCFLV-VYVDDLILAATSRAYMDEIKTKLAATFKMRDLGPASYVLGIQIRRDR 1243          
BLAST of mRNA_H-paniculata_contig14930.2936.1 vs. uniprot
Match: H3H9Y1_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9Y1_PHYRM)

HSP 1 Score: 120 bits (301), Expect = 8.210e-29
Identity = 66/159 (41.51%), Postives = 100/159 (62.89%), Query Frame = 0
Query:    1 MRTVFSLVAEYDFELEGMDVDAAYLNAPVEEELFVKLPSEFPPFSGDIPI-VRRLHKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYYSRDDGGETDTLVGVYVDDLVIAGRREKV-DEFKHSISQRFRTKDLGFLSRVLGIEIRLDRPNGTIT 157
            +R V SL A+Y  +L  MDV  A+LN  ++E++++  P  +     D P  V +L +SLYGLKQS R WN T+DDF++ +G  +  ++ C+Y  RD  G+    V +YVDDLV+A   +++ D  KH++S+RF   DLG L   LG+EI+ DR +G +T
Sbjct:  376 IRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLDSTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVT 530          
BLAST of mRNA_H-paniculata_contig14930.2936.1 vs. uniprot
Match: H3H8P6_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8P6_PHYRM)

HSP 1 Score: 116 bits (291), Expect = 1.030e-28
Identity = 64/159 (40.25%), Postives = 99/159 (62.26%), Query Frame = 0
Query:    1 MRTVFSLVAEYDFELEGMDVDAAYLNAPVEEELFVKLPSEFPPFSGDIPI-VRRLHKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYYSRDDGGETDTLVGVYVDDLVIAGRREKV-DEFKHSISQRFRTKDLGFLSRVLGIEIRLDRPNGTIT 157
            +R V SL A+Y  +L  MDV  A+LN  ++E++++  P  +     D P  V +L +SLYGLKQS R WN T+DDF++ +G  +  ++ C+Y  RD  G+    V +YVDDLV+A   +++ +  KH++S+RF   DLG L   LG+EI+ D  +G +T
Sbjct:  117 IRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVT 271          
BLAST of mRNA_H-paniculata_contig14930.2936.1 vs. uniprot
Match: W7T0T3_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0T3_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.340e-28
Identity = 66/153 (43.14%), Postives = 95/153 (62.09%), Query Frame = 0
Query:    1 MRTVFSLVAEYDFELEGMDVDAAYLNAPVEEELFVKLPSEFPPF-SGDIPIVRRLHKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYYSRDDGGETDTLVGVYVDDLVIAGR-REKVDEFKHSISQRFRTKDLGFLSRVLGIEIRLDR 151
            +R + ++    D EL+ MDV+ AYL + +EE+++VK P  +  + S    +V RL KSLYGLKQSGRNW+  +D +  G G   S+ + CLY      GE   +V +YVDDL+I    RE V++FKH+IS+ F  KDL  L  +LG+ I+ DR
Sbjct:  507 IRLILAIACILDLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILVIV-LYVDDLIITSNSREMVNKFKHAISREFSMKDLKELDWILGMAIKRDR 658          
BLAST of mRNA_H-paniculata_contig14930.2936.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.150e-28
Identity = 70/163 (42.94%), Postives = 97/163 (59.51%), Query Frame = 0
Query:    1 MRTVFSLVAEYDFELEGMDVDAAYLNAPVEEELFVKLP---SEFPPFSGDIPIVRRLHKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYYSRDDGGETDTLVGVYVDDLVIAGR-REKVDEFKHSISQRFRTKDLGFLSRVLGIEIRLDRPNGTITTS 159
            +R V +L    D EL+ MDVD AYL + +EE++++K P    ++ P  G+  +V RL KSLYGLKQSGRNW+  +D +  G GL  S  + CLY      GE   +V +YVDDL+I    R   D+FK  IS+ F  KDL  L  +LG+ I+ +R N T+  S
Sbjct:  287 IRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGE--LVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEILVIV-LYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEIS 446          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14930.2936.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3H934_PHYRM1.120e-2940.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9HG25_PARCT1.540e-2941.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7TCB8_9STRA2.540e-2944.44Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
A0A6S7HLY2_PARCT5.440e-2940.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7TII5_9STRA5.640e-2942.86Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A409WVI7_9AGAR7.540e-2945.45Integrase catalytic domain-containing protein (Fra... [more]
H3H9Y1_PHYRM8.210e-2941.51CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
H3H8P6_PHYRM1.030e-2840.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7T0T3_9STRA1.340e-2843.14Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7TJ26_9STRA3.150e-2842.94Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 3..150
e-value: 2.8E-33
score: 115.6
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 18..147
NoneNo IPR availablePANTHERPTHR11439:SF280coord: 18..147

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14930contigH-paniculata_contig14930:3471..3950 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14930.2936.1mRNA_H-paniculata_contig14930.2936.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig14930 3444..4787 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig14930.2936.1 ID=prot_H-paniculata_contig14930.2936.1|Name=mRNA_H-paniculata_contig14930.2936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=160bp
MRTVFSLVAEYDFELEGMDVDAAYLNAPVEEELFVKLPSEFPPFSGDIPI
VRRLHKSLYGLKQSGRNWNNTLDDFLVGIGLDRSTTNSCLYYSRDDGGET
DTLVGVYVDDLVIAGRREKVDEFKHSISQRFRTKDLGFLSRVLGIEIRLD
RPNGTITTS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like