mRNA_H-paniculata_contig14912.2927.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig14912.2927.1 vs. uniprot
Match: A0A6H5JBL3_9PHAE (DNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL3_9PHAE) HSP 1 Score: 162 bits (409), Expect = 4.260e-46 Identity = 81/109 (74.31%), Postives = 88/109 (80.73%), Query Frame = 1 Query: 1 QGTAADIIKSAMVLVAVRLDQWRCGVQPGSDCPRMIMQIHDELVFECPAREEDLGKLKGLLKECMEMETPARLGIKCPLTVNMLVGMSWGSMRPVVVVPASHNSDIDTS 327 QGTAADI+K+AMVLVA RLD WR + G DCPR+IMQIHDELV ECPA EEDL KLKGLL +CME+E PA LGIKCPLTVNMLVGMSWGSMR VV SH+ D D S Sbjct: 161 QGTAADIMKTAMVLVARRLDAWRSRLDEGLDCPRLIMQIHDELVLECPACEEDLEKLKGLLADCMEVEAPAVLGIKCPLTVNMLVGMSWGSMRRVV----SHDEDDDDS 265
BLAST of mRNA_H-paniculata_contig14912.2927.1 vs. uniprot
Match: D7FK42_ECTSI (DNA-directed DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK42_ECTSI) HSP 1 Score: 161 bits (408), Expect = 2.600e-42 Identity = 80/109 (73.39%), Postives = 88/109 (80.73%), Query Frame = 1 Query: 1 QGTAADIIKSAMVLVAVRLDQWRCGVQPGSDCPRMIMQIHDELVFECPAREEDLGKLKGLLKECMEMETPARLGIKCPLTVNMLVGMSWGSMRPVVVVPASHNSDIDTS 327 QGTAADI+K+AMVLVA RLD WR + G DCPR+IMQIHDELV ECPA EEDL +LKGLL +CME+E PA LGIKCPLTVNMLVGMSWGSMR VV SH+ D D S Sbjct: 1114 QGTAADIMKTAMVLVARRLDAWRSSLDEGLDCPRLIMQIHDELVLECPACEEDLERLKGLLADCMEVEAPAVLGIKCPLTVNMLVGMSWGSMRRVV----SHDEDDDDS 1218
BLAST of mRNA_H-paniculata_contig14912.2927.1 vs. uniprot
Match: A0A482SRY5_9ARCH (POLAc domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SRY5_9ARCH) HSP 1 Score: 76.3 bits (186), Expect = 3.030e-14 Identity = 41/97 (42.27%), Postives = 56/97 (57.73%), Query Frame = 1 Query: 1 QGTAADIIKSAMVL---VAVRLDQWRCGVQPGSD-CPRMIMQIHDELVFECPAREEDLGKLKGLLKECMEMETPARLGIKCPLTVNMLVGMSWGSMR 279 QGTAAD+IK AM+L + LD++ G D C R++MQIHDEL+FE P + L + LK ME + RL + PL N+ VG WG ++ Sbjct: 36 QGTAADMIKLAMILSVEMIATLDKYESNSPVGDDRCARLVMQIHDELIFEVPDDADYLAQFIARLKIIMEEKVVKRLNLCVPLVTNVSVGKRWGDVQ 132
BLAST of mRNA_H-paniculata_contig14912.2927.1 vs. uniprot
Match: A0A7S3V8E1_9STRA (DNA-directed DNA polymerase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V8E1_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 4.490e-14 Identity = 38/96 (39.58%), Postives = 58/96 (60.42%), Query Frame = 1 Query: 1 QGTAADIIKSAMVLVAVRLDQWR---CGVQPGSDCPRMIMQIHDELVFECPAREEDLGKLKGLLKECMEMETPARLGIKCPLTVNMLVGMSWGSMR 279 QG+AAD++K AM+ +A R+ WR G + PRM++QIHDEL+FE A + D+ +L+ ++ C E +K PL + +G SWGSM+ Sbjct: 1280 QGSAADLMKLAMLKMASRITDWRKERTGNGESNTPPRMLLQIHDELLFEIVANQADVDRLRSVVTRCCTEECVEEFRLKVPLKLKCSIGTSWGSMK 1375
BLAST of mRNA_H-paniculata_contig14912.2927.1 vs. uniprot
Match: A0A6V2EN94_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2EN94_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 5.950e-14 Identity = 42/98 (42.86%), Postives = 58/98 (59.18%), Query Frame = 1 Query: 1 QGTAADIIKSAMVLVAVRLDQWRCGV-QPGSD--CPRMIMQIHDELVFECPAREEDLGKLKGLLKECMEMETPARLGIKCPLTVNMLVGMSWGSMRPV 285 QG+AAD+IK AM+ A RL W V + G PR+++QIHDEL+FE A E D+ KLK ++ +C E +K PL++ G+SWG M V Sbjct: 1028 QGSAADLIKLAMLKTASRLMDWHKEVIEAGGTNIAPRLLLQIHDELLFEVMANETDVSKLKDIVTQCCGEECVEEFKLKVPLSLKCTCGISWGLMNEV 1125
BLAST of mRNA_H-paniculata_contig14912.2927.1 vs. uniprot
Match: A0A7R9VQU8_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VQU8_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 6.510e-14 Identity = 37/94 (39.36%), Postives = 58/94 (61.70%), Query Frame = 1 Query: 1 QGTAADIIKSAMVLVAVRLDQWRC--GVQPGSDCPRMIMQIHDELVFECPAREEDLGKLKGLLKECMEMETPARLGIKCPLTVNMLVGMSWGSM 276 QG+AADI+K AM+ ++ R+ W+ G+ PR+++QIHDEL+FE A E D+ +L+ + C E +K LT+ + +G+SWGSM Sbjct: 390 QGSAADIMKLAMLKMSARIMDWKKAEGLDSLGSAPRILLQIHDELLFETDANESDVKRLRDAIMRCCADECVREFDLKVQLTMTLRIGISWGSM 483
BLAST of mRNA_H-paniculata_contig14912.2927.1 vs. uniprot
Match: A0A7S2WU15_9STRA (DNA-directed DNA polymerase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU15_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 1.430e-12 Identity = 39/94 (41.49%), Postives = 57/94 (60.64%), Query Frame = 1 Query: 1 QGTAADIIKSAMVLVAVRLDQ-WRCGVQPGSDCPRMIMQIHDELVFECPAREEDLGKLKGLLKECMEMETPARLGIKCPLTVNMLVGMSWGSMR 279 QG+A+D++K AMV + +L W+ P PRMI+Q+HDEL+F+ PA E + LK L++ CM +L + PL V M VG +WG+M Sbjct: 279 QGSASDMMKLAMVAIHRQLPAAWKDLKLPP---PRMILQVHDELIFDVPATLEAVQTLKSLVRSCMVAHVSQQLQLNVPLDVKMCVGTTWGTMH 369
BLAST of mRNA_H-paniculata_contig14912.2927.1 vs. uniprot
Match: A0A1G1W895_9BACT (DNA-directed DNA polymerase n=1 Tax=Candidatus Woykebacteria bacterium RBG_13_40_15 TaxID=1802593 RepID=A0A1G1W895_9BACT) HSP 1 Score: 74.3 bits (181), Expect = 5.410e-12 Identity = 45/103 (43.69%), Postives = 61/103 (59.22%), Query Frame = 1 Query: 1 QGTAADIIKSAMVLVAVRLDQWRCGVQPGS------DCPRMIMQIHDELVFECPAREEDLGKLKGLLKECMEMETPARLGIKCPLTVNMLVGMSWGSMRPVVV 291 QGTAADIIK AMV ++ +L R PG +MI+Q+HDELVFE P E +L ++ ++K+CME P + PL V + VG +WG M+PV V Sbjct: 643 QGTAADIIKKAMVNISKQLAPAR-QASPGEVGGESRKQTKMILQVHDELVFEVP--EGELKEVTPIIKDCMENCFP----LSIPLVVELKVGKNWGEMKPVEV 738
BLAST of mRNA_H-paniculata_contig14912.2927.1 vs. uniprot
Match: A0A7S4JPM5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JPM5_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 7.880e-12 Identity = 38/97 (39.18%), Postives = 55/97 (56.70%), Query Frame = 1 Query: 1 QGTAADIIKSAMVLVAVRLDQWR--CGVQPGSDC--PRMIMQIHDELVFECPAREEDLGKLKGLLKECMEMETPARLGIKCPLTVNMLVGMSWGSMR 279 QG+AADI+K AM+ ++ R+ W+ C PG P +++QIHDEL+FE A E D+ L+ + C E +K L + + GMSWGSM Sbjct: 1028 QGSAADIMKLAMLKMSSRIMDWKKECLDSPGGSVVPPMILLQIHDELLFETNANEIDVKMLRDAIMRCCAEECVREFNLKVQLKLKCMYGMSWGSME 1124
BLAST of mRNA_H-paniculata_contig14912.2927.1 vs. uniprot
Match: A0A7S2LIW8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LIW8_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 1.270e-11 Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = 1 Query: 1 QGTAADIIKSAMVLVAVRLDQW-RCGVQPGSDC--PRMIMQIHDELVFECPAREEDLGKLKGLLKECMEMETPARLGIKCPLTVNMLVGMSWG 270 QG+AAD++K AM+ + R+ W + G G PRM++QIHDEL+FE ++D+ +LK + C E L +K PL VN VG SWG Sbjct: 478 QGSAADLMKLAMLKIGSRITDWHKEGHSAGGTGRHPRMLLQIHDELLFEIANNKDDIQRLKDAIICCCAEECELDLKLKVPLKVNCSVGSSWG 570 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14912.2927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14912.2927.1 >prot_H-paniculata_contig14912.2927.1 ID=prot_H-paniculata_contig14912.2927.1|Name=mRNA_H-paniculata_contig14912.2927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp MVLVAVRLDQWRCGVQPGSDCPRMIMQIHDELVFECPAREEDLGKLKGLLback to top mRNA from alignment at H-paniculata_contig14912:1388..3489- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig14912.2927.1 ID=mRNA_H-paniculata_contig14912.2927.1|Name=mRNA_H-paniculata_contig14912.2927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2102bp|location=Sequence derived from alignment at H-paniculata_contig14912:1388..3489- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig14912:1388..3489- >mRNA_H-paniculata_contig14912.2927.1 ID=mRNA_H-paniculata_contig14912.2927.1|Name=mRNA_H-paniculata_contig14912.2927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig14912:1388..3489- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |