prot_H-paniculata_contig14912.2927.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig14912.2927.1
Unique Nameprot_H-paniculata_contig14912.2927.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length112
Homology
BLAST of mRNA_H-paniculata_contig14912.2927.1 vs. uniprot
Match: A0A6H5JBL3_9PHAE (DNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL3_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 6.200e-41
Identity = 72/98 (73.47%), Postives = 77/98 (78.57%), Query Frame = 0
Query:    1 MVLVAVRLDQWRCGVQPGSDCPRMIMQIHDELVFECPAREEDLGKLKGLLKECMEMETPARLGIKCPLTVNMLVGMSWGSMRPVVVVPASHNSDIDTS 98
            MVLVA RLD WR  +  G DCPR+IMQIHDELV ECPA EEDL KLKGLL +CME+E PA LGIKCPLTVNMLVGMSWGSMR VV    SH+ D D S
Sbjct:  172 MVLVARRLDAWRSRLDEGLDCPRLIMQIHDELVLECPACEEDLEKLKGLLADCMEVEAPAVLGIKCPLTVNMLVGMSWGSMRRVV----SHDEDDDDS 265          
BLAST of mRNA_H-paniculata_contig14912.2927.1 vs. uniprot
Match: D7FK42_ECTSI (DNA-directed DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK42_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 7.200e-38
Identity = 71/98 (72.45%), Postives = 77/98 (78.57%), Query Frame = 0
Query:    1 MVLVAVRLDQWRCGVQPGSDCPRMIMQIHDELVFECPAREEDLGKLKGLLKECMEMETPARLGIKCPLTVNMLVGMSWGSMRPVVVVPASHNSDIDTS 98
            MVLVA RLD WR  +  G DCPR+IMQIHDELV ECPA EEDL +LKGLL +CME+E PA LGIKCPLTVNMLVGMSWGSMR VV    SH+ D D S
Sbjct: 1125 MVLVARRLDAWRSSLDEGLDCPRLIMQIHDELVLECPACEEDLERLKGLLADCMEVEAPAVLGIKCPLTVNMLVGMSWGSMRRVV----SHDEDDDDS 1218          
BLAST of mRNA_H-paniculata_contig14912.2927.1 vs. uniprot
Match: A0A7S3V8E1_9STRA (DNA-directed DNA polymerase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V8E1_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 9.590e-11
Identity = 31/85 (36.47%), Postives = 48/85 (56.47%), Query Frame = 0
Query:    1 MVLVAVRLDQWR---CGVQPGSDCPRMIMQIHDELVFECPAREEDLGKLKGLLKECMEMETPARLGIKCPLTVNMLVGMSWGSMR 82
            M+ +A R+  WR    G    +  PRM++QIHDEL+FE  A + D+ +L+ ++  C   E      +K PL +   +G SWGSM+
Sbjct: 1291 MLKMASRITDWRKERTGNGESNTPPRMLLQIHDELLFEIVANQADVDRLRSVVTRCCTEECVEEFRLKVPLKLKCSIGTSWGSMK 1375          
BLAST of mRNA_H-paniculata_contig14912.2927.1 vs. uniprot
Match: A0A7S2WU15_9STRA (DNA-directed DNA polymerase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU15_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.020e-10
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 0
Query:   22 PRMIMQIHDELVFECPAREEDLGKLKGLLKECMEMETPARLGIKCPLTVNMLVGMSWGSMR 82
            PRMI+Q+HDEL+F+ PA  E +  LK L++ CM      +L +  PL V M VG +WG+M 
Sbjct:  309 PRMILQVHDELIFDVPATLEAVQTLKSLVRSCMVAHVSQQLQLNVPLDVKMCVGTTWGTMH 369          
BLAST of mRNA_H-paniculata_contig14912.2927.1 vs. uniprot
Match: A0A7R9VQU8_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VQU8_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.060e-10
Identity = 29/83 (34.94%), Postives = 48/83 (57.83%), Query Frame = 0
Query:    1 MVLVAVRLDQWRC--GVQPGSDCPRMIMQIHDELVFECPAREEDLGKLKGLLKECMEMETPARLGIKCPLTVNMLVGMSWGSM 81
            M+ ++ R+  W+   G+      PR+++QIHDEL+FE  A E D+ +L+  +  C   E      +K  LT+ + +G+SWGSM
Sbjct:  401 MLKMSARIMDWKKAEGLDSLGSAPRILLQIHDELLFETDANESDVKRLRDAIMRCCADECVREFDLKVQLTMTLRIGISWGSM 483          
BLAST of mRNA_H-paniculata_contig14912.2927.1 vs. uniprot
Match: A0A6V2EN94_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2EN94_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.290e-10
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 0
Query:    1 MVLVAVRLDQWRCGV-QPGSD--CPRMIMQIHDELVFECPAREEDLGKLKGLLKECMEMETPARLGIKCPLTVNMLVGMSWGSMRPV 84
            M+  A RL  W   V + G     PR+++QIHDEL+FE  A E D+ KLK ++ +C   E      +K PL++    G+SWG M  V
Sbjct: 1039 MLKTASRLMDWHKEVIEAGGTNIAPRLLLQIHDELLFEVMANETDVSKLKDIVTQCCGEECVEEFKLKVPLSLKCTCGISWGLMNEV 1125          
BLAST of mRNA_H-paniculata_contig14912.2927.1 vs. uniprot
Match: A0A482SRY5_9ARCH (POLAc domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SRY5_9ARCH)

HSP 1 Score: 62.0 bits (149), Expect = 7.500e-10
Identity = 30/76 (39.47%), Postives = 42/76 (55.26%), Query Frame = 0
Query:    8 LDQWRCGVQPGSD-CPRMIMQIHDELVFECPAREEDLGKLKGLLKECMEMETPARLGIKCPLTVNMLVGMSWGSMR 82
            LD++      G D C R++MQIHDEL+FE P   + L +    LK  ME +   RL +  PL  N+ VG  WG ++
Sbjct:   57 LDKYESNSPVGDDRCARLVMQIHDELIFEVPDDADYLAQFIARLKIIMEEKVVKRLNLCVPLVTNVSVGKRWGDVQ 132          
BLAST of mRNA_H-paniculata_contig14912.2927.1 vs. uniprot
Match: A0A7S2LIW8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LIW8_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.320e-8
Identity = 32/82 (39.02%), Postives = 45/82 (54.88%), Query Frame = 0
Query:    1 MVLVAVRLDQW-RCGVQPGSDC--PRMIMQIHDELVFECPAREEDLGKLKGLLKECMEMETPARLGIKCPLTVNMLVGMSWG 79
            M+ +  R+  W + G   G     PRM++QIHDEL+FE    ++D+ +LK  +  C   E    L +K PL VN  VG SWG
Sbjct:  489 MLKIGSRITDWHKEGHSAGGTGRHPRMLLQIHDELLFEIANNKDDIQRLKDAIICCCAEECELDLKLKVPLKVNCSVGSSWG 570          
BLAST of mRNA_H-paniculata_contig14912.2927.1 vs. uniprot
Match: A0A7S4JPM5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JPM5_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.490e-8
Identity = 30/86 (34.88%), Postives = 45/86 (52.33%), Query Frame = 0
Query:    1 MVLVAVRLDQWR--CGVQPGSDC--PRMIMQIHDELVFECPAREEDLGKLKGLLKECMEMETPARLGIKCPLTVNMLVGMSWGSMR 82
            M+ ++ R+  W+  C   PG     P +++QIHDEL+FE  A E D+  L+  +  C   E      +K  L +  + GMSWGSM 
Sbjct: 1039 MLKMSSRIMDWKKECLDSPGGSVVPPMILLQIHDELLFETNANEIDVKMLRDAIMRCCAEECVREFNLKVQLKLKCMYGMSWGSME 1124          
BLAST of mRNA_H-paniculata_contig14912.2927.1 vs. uniprot
Match: A0A522U7K9_9BACT (POLAc domain-containing protein (Fragment) n=1 Tax=Patescibacteria group bacterium TaxID=2052139 RepID=A0A522U7K9_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 3.920e-8
Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 0
Query:   17 PGSDCPRMIMQIHDELVFECPAREEDLGKLKGLLKECMEMETPARLGIKCPLTVNMLVGMSW 78
            PG+   RMIMQ+HDELV ECP  E++   +  LLKECM   T A L  K PLTV++  G +W
Sbjct:    3 PGA---RMIMQVHDELVVECP--EKNAAAVAALLKECMV--TAASL--KVPLTVDVATGKNW 55          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14912.2927.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBL3_9PHAE6.200e-4173.47DNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
D7FK42_ECTSI7.200e-3872.45DNA-directed DNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A7S3V8E1_9STRA9.590e-1136.47DNA-directed DNA polymerase n=1 Tax=Chaetoceros de... [more]
A0A7S2WU15_9STRA2.020e-1045.90DNA-directed DNA polymerase n=1 Tax=Rhizochromulin... [more]
A0A7R9VQU8_9STRA3.060e-1034.94Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A6V2EN94_9STRA3.290e-1039.08Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A482SRY5_9ARCH7.500e-1039.47POLAc domain-containing protein n=1 Tax=archaeon T... [more]
A0A7S2LIW8_9STRA3.320e-839.02Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S4JPM5_9STRA3.490e-834.88Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A522U7K9_9BACT3.920e-851.61POLAc domain-containing protein (Fragment) n=1 Tax... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.370coord: 1..82
e-value: 6.0E-12
score: 47.4
NoneNo IPR availablePANTHERPTHR10133:SF27DNA POLYMERASE THETAcoord: 22..84
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 21..81
IPR001098DNA-directed DNA polymerase, family A, palm domainPFAMPF00476DNA_pol_Acoord: 22..79
e-value: 1.1E-10
score: 41.2
IPR002298DNA polymerase APANTHERPTHR10133DNA POLYMERASE Icoord: 22..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14912contigH-paniculata_contig14912:1627..3456 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14912.2927.1mRNA_H-paniculata_contig14912.2927.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig14912 1388..3489 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig14912.2927.1 ID=prot_H-paniculata_contig14912.2927.1|Name=mRNA_H-paniculata_contig14912.2927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MVLVAVRLDQWRCGVQPGSDCPRMIMQIHDELVFECPAREEDLGKLKGLL
KECMEMETPARLGIKCPLTVNMLVGMSWGSMRPVVVVPASHNSDIDTSSE
GDMSDGIGGHD*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001098DNA-dir_DNA_pol_A_palm_dom
IPR002298DNA_polymerase_A