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Homology
BLAST of mRNA_H-paniculata_contig14902.2923.1 vs. uniprot
Match: A0A6H5JML9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML9_9PHAE) HSP 1 Score: 158 bits (400), Expect = 1.260e-35 Identity = 136/354 (38.42%), Postives = 160/354 (45.20%), Query Frame = 1
Query: 1 RYLAQCKMGFEGRLIDVIAKLAPTAAPDASQLLADAASSLPQSSRPVEAVGKKSKASDAXXXXXXXXXXXXXDRVRAAREKGAGGKXXXXXGLADGHADRMLCDFVKDLTASFLTDSYGVPSFVRVLRVFLRTAFPATARSIVWKELGAVGLLSLLDPAPA----PAPPARAAGRRSAPNDQDGEASDDVNVTMSSIAREDSSRDAMATTLTEGRGQRGENEVKVEGCSGGGDGQLPWADADAYLYPPDVDKSIIDAYLDALEHPRFGPPSA--------------GGR---GXXXXXXXXXXXXXHKQQELGM--------------------VSMRSVAVHHIACYLFPPPP 939
RYL QC GFEGRL +VIA+LA +APD ++++ADAA++ XXXXXXXXXXX DR RAAR + HA+R L +FVKDL ASFL DS+G+PSF RVLRVF+RT FP AR +VWKELG VGLL LLDP PA PAP A S P +GGG AYLYPPDVD I++ YL ALEHPRFGP + G R G G+ V+MR +AVHH+ACYLFPP P
Sbjct: 986 RYLEQCGAGFEGRLAEVIARLALASAPDPAKMIADAATAXXX--------XXXXXXXXXXXXXXXXXXXXARDRARAARRQS--------------HAERALLEFVKDLVASFLADSFGLPSFARVLRVFVRTGFPVAARRVVWKELGDVGLLHLLDPPPAGATAPAPAAAVPSHDSVP--------------------------------------------AAHAINGGG-----CVTDQAYLYPPDVDGDIVEVYLTALEHPRFGPAAXXXXXXXXXXXXXXXGERRRHGRVEETERGSALSARAAAATGLAVEAGRDDLSPSAAAAGGWAVTMREIAVHHLACYLFPPSP 1268
BLAST of mRNA_H-paniculata_contig14902.2923.1 vs. uniprot
Match: A0A835YNX8_9STRA (RPAP1_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNX8_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 1.980e-5 Identity = 31/67 (46.27%), Postives = 39/67 (58.21%), Query Frame = 1
Query: 280 ADGHADRMLCDFVKDLTASFLTDSYGVPSFVRVLRVFLRTAFPATARSIVWKELGAVGLLSLLDPAP 480
AD L FV DL +F+ DS G F R L + LR P AR+++W+ELGA+GLL LL P P
Sbjct: 1082 ADAQQHPGLTAFVSDLLGAFVEDSCGDAGFARALLLLLRPRMPPLARALIWRELGALGLLPLLAPPP 1148
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 2 |
Model size | 3000 |
Cds size | 1911 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14902.2923.1 >prot_H-paniculata_contig14902.2923.1 ID=prot_H-paniculata_contig14902.2923.1|Name=mRNA_H-paniculata_contig14902.2923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=637bp
MGFEGRLIDVIAKLAPTAAPDASQLLADAASSLPQSSRPVEAVGKKSKAS DAAAATAAATAATARDRVRAAREKGAGGKGGGEGGLADGHADRMLCDFVK DLTASFLTDSYGVPSFVRVLRVFLRTAFPATARSIVWKELGAVGLLSLLD PAPAPAPPARAAGRRSAPNDQDGEASDDVNVTMSSIAREDSSRDAMATTL TEGRGQRGENEVKVEGCSGGGDGQLPWADADAYLYPPDVDKSIIDAYLDA LEHPRFGPPSAGGRGGGNGGEDGRQQEQHKQQELGMVSMRSVAVHHIACY LFPPPPPPPSPPSSPSPSPSPSPSPSPSPSPSPPPSCSPSSSWADPLLLQ QQQRAEPTVLEVSNDKNAAKITGAGDEESSQVVYEKVAGSAPTVNEGPGM HGVVTDNATPAAVVAAPFSSPQWRPDFGRRKRLERLLLMGSSSSSGRGQG EGSARSMEHREGGLTDGSEERPRDRGCCSSVAAAAAAVGVAEAVLGYECD AVVAGHHTAGIGVSCSHEEEKEQREGVDDEGVGMENGKCPSSSSPYSSFF VHDLPSTSGSFLRRPKACSWASKLGPDRRRILQAYCVCRSSGGTGGSGSG GVSGVRDSDVAAWLLGQGELEVTEVVRRLGASLKSS* back to topmRNA from alignment at H-paniculata_contig14902:2123..6358- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig14902.2923.1 ID=mRNA_H-paniculata_contig14902.2923.1|Name=mRNA_H-paniculata_contig14902.2923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4236bp|location=Sequence derived from alignment at H-paniculata_contig14902:2123..6358- (Halopteris paniculata Hal_grac_a_UBK monoicous) AGGTACCTCGCACAGTGTAAGATGGGCTTTGAAGGCCGTTTGATCGATGT
TATCGCGAAGTTGGCGCCTACGGCTGCGCCTGACGCATCCCAGCTCTTGG
CCGACGCCGCGTCTTCTCTCCCTCAATCATCACGACCTGTCGAGGCCGTC
GGCAAGAAATCGAAAGCTTCGGACGCAGCAGCAGCAACCGCAGCAGCTAC
AGCAGCTACAGCACGTGATCGTGTTCGCGCGGCTCGGGAGAAGGGTGCAG
GGGGGAAAGGAGGTGGTGAAGGGGGGCTGGCAGATGGCCACGCGGATCGG
ATGCTATGCGATTTTGTGAAGGATCTCACGGCGAGCTTTCTGACAGACTC
GTATGGGGTCCCCAGCTTTGTTCGAGTACTGAGGGTGTTTTTGAGGACCG
CCTTTCCGGCTACGGCGAGGTGACACATATATACTTCAAATGCCTCCTAA
GTACTCAGTTACTAGTATAGAGACACTTGAACAAACATGTCTGATTGTCA
CTATTATTATTTTTAATGGAAATCTACATGTTTTTGGGGTGGAAATTCAT
TTTTTTGGGTCGAACGGTTGACGTTCAACAACTAAACACACGCCGTGAAA
AAAAGGATTCGGCCGAAAAAAGACCTTTTTTTGGGACTCTTGGTATTTAT
TGTCCCATAAGTACAGTATGTTCTGATGAGAGACGTGCTTAAACTATCTC
TGATTAAAGAAAAAAGTAGAGTCCTACATGTTTTTGGGTTTGAAGCCCAA
AATATTTCGTCAAATACTTGACTTCAAGCATCAAAACGGACGCCGTGAAA
AGCACTCGGCCGAAAAACGCCAAATTGTGCATTATTTTGTGTCGAGTCCG
GGGAAAAGTCCCCAAGAAGGGCTTTTCTCGGCCGAGTACTTCCCCGGCGC
GTGTTTTGGTGTTTAAAGTCAACTGTTTGACCCAAAATTTGGGCTTTCAA
CATAACAAAGATGTAGAATTCATATGACGAAAAAGCCTCCGGAAATATTT
AAGTGTCTATAATCTAACTGAGTATATTTATGAGACAGAGGAAGTACATA
TTTTGCGTTATCATATGTTATGTGGTGTGTGCACCGGGTACCTTTTGTTT
TCATGCCGCGTGTGATGAGGCCCAATTCTCACAGCAGGCCAACTAGGTTT
CAATGCAGCACTCGTCTTGTTCAAGTTTACGCGACAAAAGTAATTTGTTT
TTATCTGGGATTCTCGAAGGGCGAGGCCATTTTTTTTCACTTCAGTTTCA
CTCAACACATATCGAGCCTTTTATTTAAGTTGTGTGCATGCATACTGGCA
AGCGTTATAGGCACGCGGATTGCCTTATACGACACTGCCTATATCCTAAT
TTTGAAAGCAAAAGTGATGATGTATGAACCGCCGGGCTCCCTGATTCGTG
CTTTCCTCTATTGAATTAATTTTTCTGACAAGTATACACAACTGACGATT
AACGTCAGCCACATAATCTCAACATGGGTACAATGGAGTTATTATATAAA
CGTTAAAACCTAGTTATACTTACCATGGGAAGTGGGTCGACTTAGGCATG
CCCCCTCCCCCCCCCCCCCCCCCCCCTCGTGCACAAACTGTCGCAAACGT
ACACCCGTTCTTTTTGCTTCCGAAAATATGCGTGTTCTATCTAACATATG
TGTAGGAGCATCGTGTGGAAGGAGCTCGGGGCAGTCGGCCTTCTATCCCT
CCTGGACCCCGCCCCTGCCCCTGCCCCTCCCGCCAGGGCGGCCGGTCGTC
GTTCCGCTCCTAATGACCAAGACGGCGAGGCGAGCGACGACGTCAATGTC
ACCATGTCATCGATCGCGAGAGAAGATTCTTCTCGTGACGCTATGGCGAC
GACGCTCACCGAGGGGCGGGGGCAACGTGGTGAAAACGAGGTCAAGGTCG
AGGGCTGCAGCGGCGGTGGTGATGGTCAGTTGCCGTGGGCAGACGCAGAT
GCATATCTTTACCCTCCCGACGTAGACAAGTCTATTATCGATGCCTATTT
AGATGCCTTGGAGCACCCGCGGTTCGGCCCGCCGAGCGCTGGGGGACGCG
GTGGCGGAAACGGGGGGGAAGATGGGCGGCAGCAGGAGCAGCATAAGCAG
CAAGAATTGGGTATGGTGTCCATGCGATCGGTGGCGGTGCATCACATAGC
CTGCTACCTTTTCCCTCCACCACCACCACCACCATCACCACCATCATCAC
CATCACCATCACCATCACCATCACCATCACCATCACCATCACCATCACCA
TCACCACCCCCGTCGTGTTCGCCGTCGTCTTCTTGGGCCGATCCTCTGCT
ACTGCAACAACAACAACGCGCCGAACCAACCGTACTAGAAGTAAGTAATG
ATAAAAATGCAGCAAAAATCACTGGCGCCGGTGACGAAGAAAGCAGCCAG
GTCGTCTACGAGAAAGTTGCTGGTAGTGCTCCTACGGTAAACGAGGGACC
GGGGATGCATGGAGTAGTCACCGACAACGCAACACCCGCCGCTGTCGTCG
CCGCTCCGTTCTCCTCCCCACAATGGCGGCCCGATTTCGGGCGCCGTAAG
AGATTGGAGCGGTTGTTGCTGATGGGATCATCGTCATCATCAGGGAGAGG
GCAAGGGGAGGGTTCGGCTAGAAGCATGGAGCACCGAGAGGGTGGGTTGA
CCGATGGATCAGAGGAGCGACCGAGGGATCGTGGTTGTTGTAGTTCTGTT
GCTGCTGCTGCTGCTGCTGTTGGAGTGGCGGAGGCGGTGCTGGGTTATGA
ATGCGATGCAGTTGTTGCTGGTCACCACACTGCCGGAATCGGTGTTTCTT
GTTCGCACGAAGAAGAAAAGGAACAAAGGGAAGGGGTTGACGACGAGGGT
GTTGGTATGGAAAATGGCAAGTGTCCATCATCATCTTCTCCTTACAGCTC
CTTCTTCGTGCACGATCTGCCATCGACATCGGGGTCGTTCTTGCGAAGGC
CGAAGGCGTGCTCATGGGCTTCGAAGCTAGGACCTGACCGTCGTAGGATT
CTGCAGGCTTACTGTGTGTGTAGGAGTAGTGGTGGTACAGGTGGCAGTGG
TAGCGGCGGCGTTAGTGGGGTTCGTGATTCGGACGTCGCTGCTTGGTTAT
TAGGACAGGGAGAGCTGGAGGTGACCGAGGTCGTGAGGCGTCTTGGTGCA
AGTCTCAAATCTTCGTGATGATACACACACACAGTGTCACCTACTAACAG
ACGATACTCGGGATCGGGGATCAACTTTCTTGTTGGGATTGAAGTTCCGT
TGAATTTGAGTGGAAGACTTCGAAATTGGTGCTAGCGAAAGGCACTTTCC
GTGCGAATCGGAGTATCAAAAGGTTTCCGAATTCATTGTGCAGAGTAAAT
AGCAGTGAAATGGACAAAAACTCTCCCCGGAAAGTGACTTTCGCTAGCAC
CATTTTCGAAGTATTCCATTCAAATTCAACGGAACTTCAATCCCAACAAG
AATGTTGATCCCCAATCCCGAGTATGGCCTGTCTACTGTGATGTGCTTCG
TACATAATACTCCTTCTGTTTCGAAACGTTCGTGTGGAAATCTCGGAAAC
ACGGGTGTCTTGTGATCGGTGATAATACCCCGCAGCCTTACACAAGAGCT
TGTTTGCGGGATGTAGATTGTACTATTTGGTTTTGAAATCGATGAATATT
TGCGTTCCAAGAGCTGAAGATGGTTTCGAGCCTGACAACGGCTAATTCCC
GGTCAGTTCTTTTATGAACCATAACGACCCACCTTCTACCCCATGCTCGG
TCTACAGATGGAAGTGGTGCTTTTTGTTTACCAATTGTGAAGGCAAGGAA
GTGCTTTCATGTGTGAGAGTAGAAAGTGTTTTGACGAGTGAGAACAGAGT
GTTTCGACTGGGGAGGTGTGTTCAAATACTCGACATCTTTGGTCGTAAAT
ACTCGAAGTATTCGCATCTGTCCGGGGGATGGTAGGGTTGTGTCCCGTTT
TGAGTCTTTCCGAAGAGAGTATTTAGCTTGACTGGCGTTTGATGCACGTA
TCTATGGTGTCGAGTGGGGCCAAGCGAGAAAATACATGGTTTCTTGATGT
AAAATATGTACGTACAATACAGCTTCAGTTCTTGCGGTAATACTCGTATA
AGCCATTGCGTGTTGACTTAGTGTGCGAAATGAATGTTCGTGCCAGCCTA
AAATATCAGGCGCCTTGCTGTATACAACATGGAAAAATGGTGTCTATTTA
GGTGACTTGAAGCCGATGTACTTCAATATGTATATA back to topCoding sequence (CDS) from alignment at H-paniculata_contig14902:2123..6358- >mRNA_H-paniculata_contig14902.2923.1 ID=mRNA_H-paniculata_contig14902.2923.1|Name=mRNA_H-paniculata_contig14902.2923.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3822bp|location=Sequence derived from alignment at H-paniculata_contig14902:2123..6358- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGGCTTTGAAGGCCGTTTGATCGATGTTATCGCGAAGTTGGCGCCTAC GGCTGCGCCTGACGCATCCCAGCTCTTGGCCGACGCCGCGTCTTCTCTCC CTCAATCATCACGACCTGTCGAGGCCGTCGGCAAGAAATCGAAAGCTTCG GACGCAGCAGCAGCAACCGCAGCAGCTACAGCAGCTACAGCACGTGATCG TGTTCGCGCGGCTCGGGAGAAGGGTGCAGGGGGGAAAGGAGGTGGTGAAG GGGGGCTGGCAGATGGCCACGCGGATCGGATGCTATGCGATTTTGTGAAG GATCTCACGGCGAGCTTTCTGACAGACTCGTATGGGGTCCCCAGCTTTGT TCGAGTACTGAGGGTGTTTTTGAGGACCGCCTTTCCGGCTACGGCGAGAT GGGCTTTGAAGGCCGTTTGATCGATGTTATCGCGAAGTTGGCGCCTACGG CTGCGCCTGACGCATCCCAGCTCTTGGCCGACGCCGCGTCTTCTCTCCCT CAATCATCACGACCTGTCGAGGCCGTCGGCAAGAAATCGAAAGCTTCGGA CGCAGCAGCAGCAACCGCAGCAGCTACAGCAGCTACAGCACGTGATCGTG TTCGCGCGGCTCGGGAGAAGGGTGCAGGGGGGAAAGGAGGTGGTGAAGGG GGGCTGGCAGATGGCCACGCGGATCGGATGCTATGCGATTTTGTGAAGGA TCTCACGGCGAGCTTTCTGACAGACTCGTATGGGGTCCCCAGCTTTGTTC GAGTACTGAGGGTGTTTTTGAGGACCGCCTTTCCGGCTACGGCGAGGAGC ATCGTGTGGAAGGAGCTCGGGGCAGTCGGCCTTCTATCCCTCCTGGACCC CGCCCCTGCCCCTGCCCCTCCCGCCAGGGCGGCCGGTCGTCGTTCCGCTC CTAATGACCAAGACGGCGAGGCGAGCGACGACGTCAATGTCACCATGTCA TCGATCGCGAGAGAAGATTCTTCTCGTGACGCTATGGCGACGACGCTCAC CGAGGGGCGGGGGCAACGTGGTGAAAACGAGGTCAAGGTCGAGGGCTGCA GCGGCGGTGGTGATGGTCAGTTGCCGTGGGCAGACGCAGATGCATATCTT TACCCTCCCGACGTAGACAAGTCTATTATCGATGCCTATTTAGATGCCTT GGAGCACCCGCGGTTCGGCCCGCCGAGCGCTGGGGGACGCGGTGGCGGAA ACGGGGGGGAAGATGGGCGGCAGCAGGAGCAGCATAAGCAGCAAGAATTG GGTATGGTGTCCATGCGATCGGTGGCGGTGCATCACATAGCCTGCTACCT TTTCCCTCCACCACCACCACCACCATCACCACCATCATCACCATCACCAT CACCATCACCATCACCATCACCATCACCATCACCATCACCATCACCACCC CCGTCGTGTTCGCCGTCGTCTTCTTGGGCCGATCCTCTGCTACTGCAACA ACAACAACGCGCCGAACCAACCGTACTAGAAGTAAGTAATGATAAAAATG CAGCAAAAATCACTGGCGCCGGTGACGAAGAAAGCAGCCAGGTCGTCTAC GAGAAAGTTGCTGGTAGTGCTCCTACGGTAAACGAGGGACCGGGGATGCA TGGAGTAGTCACCGACAACGCAACACCCGCCGCTGTCGTCGCCGCTCCGT TCTCCTCCCCACAATGGCGGCCCGATTTCGGGCGCCGTAAGAGATTGGAG CGGTTGTTGCTGATGGGATCATCGTCATCATCAGGGAGAGGGCAAGGGGA GGGTTCGGCTAGAAGCATGGAGCACCGAGAGGGTGGGTTGACCGATGGAT CAGAGGAGCGACCGAGGGATCGTGGTTGTTGTAGTTCTGTTGCTGCTGCT GCTGCTGCTGTTGGAGTGGCGGAGGCGGTGCTGGGTTATGAATGCGATGC AGTTGTTGCTGGTCACCACACTGCCGGAATCGGTGTTTCTTGTTCGCACG AAGAAGAAAAGGAACAAAGGGAAGGGGTTGACGACGAGGGTGTTGGTATG GAAAATGGCAAGTGTCCATCATCATCTTCTCCTTACAGCTCCTTCTTCGT GCACGATCTGCCATCGACATCGGGGTCGTTCTTGCGAAGGCCGAAGGCGT GCTCATGGGCTTCGAAGCTAGGACCTGACCGTCGTAGGATTCTGCAGGCT TACTGTGTGTGTAGGAGTAGTGGTGGTACAGGTGGCAGTGGTAGCGGCGG CGTTAGTGGGGTTCGTGATTCGGACGTCGCTGCTTGGTTATTAGGACAGG GAGAGCTGGAGGTGACCGAGGTCGTGAGGCGTCTTGGTGCAAGTCTCAAA TCTTCGTGAGAGCATCGTGTGGAAGGAGCTCGGGGCAGTCGGCCTTCTAT CCCTCCTGGACCCCGCCCCTGCCCCTGCCCCTCCCGCCAGGGCGGCCGGT CGTCGTTCCGCTCCTAATGACCAAGACGGCGAGGCGAGCGACGACGTCAA TGTCACCATGTCATCGATCGCGAGAGAAGATTCTTCTCGTGACGCTATGG CGACGACGCTCACCGAGGGGCGGGGGCAACGTGGTGAAAACGAGGTCAAG GTCGAGGGCTGCAGCGGCGGTGGTGATGGTCAGTTGCCGTGGGCAGACGC AGATGCATATCTTTACCCTCCCGACGTAGACAAGTCTATTATCGATGCCT ATTTAGATGCCTTGGAGCACCCGCGGTTCGGCCCGCCGAGCGCTGGGGGA CGCGGTGGCGGAAACGGGGGGGAAGATGGGCGGCAGCAGGAGCAGCATAA GCAGCAAGAATTGGGTATGGTGTCCATGCGATCGGTGGCGGTGCATCACA TAGCCTGCTACCTTTTCCCTCCACCACCACCACCACCATCACCACCATCA TCACCATCACCATCACCATCACCATCACCATCACCATCACCATCACCATC ACCATCACCACCCCCGTCGTGTTCGCCGTCGTCTTCTTGGGCCGATCCTC TGCTACTGCAACAACAACAACGCGCCGAACCAACCGTACTAGAAGTAAGT AATGATAAAAATGCAGCAAAAATCACTGGCGCCGGTGACGAAGAAAGCAG CCAGGTCGTCTACGAGAAAGTTGCTGGTAGTGCTCCTACGGTAAACGAGG GACCGGGGATGCATGGAGTAGTCACCGACAACGCAACACCCGCCGCTGTC GTCGCCGCTCCGTTCTCCTCCCCACAATGGCGGCCCGATTTCGGGCGCCG TAAGAGATTGGAGCGGTTGTTGCTGATGGGATCATCGTCATCATCAGGGA GAGGGCAAGGGGAGGGTTCGGCTAGAAGCATGGAGCACCGAGAGGGTGGG TTGACCGATGGATCAGAGGAGCGACCGAGGGATCGTGGTTGTTGTAGTTC TGTTGCTGCTGCTGCTGCTGCTGTTGGAGTGGCGGAGGCGGTGCTGGGTT ATGAATGCGATGCAGTTGTTGCTGGTCACCACACTGCCGGAATCGGTGTT TCTTGTTCGCACGAAGAAGAAAAGGAACAAAGGGAAGGGGTTGACGACGA GGGTGTTGGTATGGAAAATGGCAAGTGTCCATCATCATCTTCTCCTTACA GCTCCTTCTTCGTGCACGATCTGCCATCGACATCGGGGTCGTTCTTGCGA AGGCCGAAGGCGTGCTCATGGGCTTCGAAGCTAGGACCTGACCGTCGTAG GATTCTGCAGGCTTACTGTGTGTGTAGGAGTAGTGGTGGTACAGGTGGCA GTGGTAGCGGCGGCGTTAGTGGGGTTCGTGATTCGGACGTCGCTGCTTGG TTATTAGGACAGGGAGAGCTGGAGGTGACCGAGGTCGTGAGGCGTCTTGG TGCAAGTCTCAAATCTTCGTGA back to top
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