mRNA_H-paniculata_contig14889.2912.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14889.2912.1
Unique NamemRNA_H-paniculata_contig14889.2912.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14889.2912.1 vs. uniprot
Match: A0A6H5KSG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG9_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 9.290e-26
Identity = 54/71 (76.06%), Postives = 63/71 (88.73%), Query Frame = 1 
Query:   64 MSARPMAPALASTELSSLPLAPGVVDRLLRSGFRTLRDVDGVQPMDLSRELKISSQEALAILRHISAASGA 276
            M+  PM PA+A TELSSLP+AP   DRLLR+GFRTLRDV+GVQP+DLSRELK+SSQEALAILR I+AA+GA
Sbjct:    1 MNVPPMGPAMARTELSSLPIAPSNRDRLLRAGFRTLRDVEGVQPLDLSRELKVSSQEALAILRDIAAATGA 71
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BLAST of mRNA_H-paniculata_contig14889.2912.1 vs. uniprot
Match: L8GZY9_ACACA (RAD51, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GZY9_ACACA)

HSP 1 Score: 55.8 bits (133), Expect = 6.650e-7
Identity = 22/52 (42.31%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:  103 ELSSLPLAPGVVDRLLRSGFRTLRDVDGVQPMDLSRELKISSQEALAILRHI 258
            ++++LPL P + ++++++GFR +RD DG +P++L++EL+++ +EAL+ILR I
Sbjct:    8 DITTLPLPPTLKNKIVQAGFRDVRDFDGYRPVELAKELRVTQEEALSILRTI 59
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BLAST of mRNA_H-paniculata_contig14889.2912.1 vs. uniprot
Match: A0A6P4XU31_BRABE (DNA repair protein RAD51 homolog 3-like n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4XU31_BRABE)

HSP 1 Score: 51.2 bits (121), Expect = 2.880e-5
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   97 STELSSLPLAPGVVDRLLRSGFRTLRDVDGVQPMDLSRELKISSQEALAILR 252
            S  + S PL P +  +LL  GF T+ D++ ++P++LS+ELKIS +EAL ILR
Sbjct:    2 SRHVGSYPLPPYLKTKLLAGGFSTVEDLEDLKPVELSKELKISPEEALEILR 53
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14889.2912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KSG9_9PHAE9.290e-2676.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
L8GZY9_ACACA6.650e-742.31RAD51, putative n=1 Tax=Acanthamoeba castellanii s... [more]
A0A6P4XU31_BRABE2.880e-548.08DNA repair protein RAD51 homolog 3-like n=3 Tax=Br... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14889contigH-paniculata_contig14889:2063..3985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size310
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929191.44901-CDS-H-paniculata_contig14889:2062..22731622929191.44901-CDS-H-paniculata_contig14889:2062..2273Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14889 2063..2273 +
1691480764.1799989-CDS-H-paniculata_contig14889:2062..22731691480764.1799989-CDS-H-paniculata_contig14889:2062..2273Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14889 2063..2273 +
1622929191.466563-CDS-H-paniculata_contig14889:3888..39831622929191.466563-CDS-H-paniculata_contig14889:3888..3983Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14889 3889..3983 +
1691480764.191883-CDS-H-paniculata_contig14889:3888..39831691480764.191883-CDS-H-paniculata_contig14889:3888..3983Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14889 3889..3983 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14889.2912.1prot_H-paniculata_contig14889.2912.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14889 2063..3983 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14889.2912.1

>prot_H-paniculata_contig14889.2912.1 ID=prot_H-paniculata_contig14889.2912.1|Name=mRNA_H-paniculata_contig14889.2912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
QKIIKCGIAVPCCSSAPLSSIMSARPMAPALASTELSSLPLAPGVVDRLL
RSGFRTLRDVDGVQPMDLSRELKISSQEALAILRHISAASGASRPATAEA
RA
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mRNA from alignment at H-paniculata_contig14889:2063..3985+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14889.2912.1 ID=mRNA_H-paniculata_contig14889.2912.1|Name=mRNA_H-paniculata_contig14889.2912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1923bp|location=Sequence derived from alignment at H-paniculata_contig14889:2063..3985+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAAAATTATCAAGTGCGGAATAGCGGTCCCTTGTTGTTCTTCTGCTCC
TTTGTCTTCCATCATGAGTGCCCGCCCCATGGCCCCAGCATTGGCAAGCA
CCGAGCTTTCCAGCCTGCCGCTTGCCCCGGGAGTGGTGGATAGGCTATTG
CGATCCGGATTTCGAACGCTGAGAGACGTGGACGGCGTCCAGCCGATGGA
TTTGTCTCGAGGTGAACAACGATGAAATAGTTATAACTACGGAGCTCTAC
CGTTGACCGGGAAATGTGAATGTTTGAATATTTCAGCGCTCGGTCGCCCC
CCTGGTTGGATTTGGAAACAGACAGTGTATTTGCTGCAAATACAGGTACT
TGGCATATATAGTTCTCCATTGGCTTCGCACAAGGTTGTCCATTGTCCGT
CACCTTCGTTGTCGTCGTTGTTTTTATTTTCGGAACAGTTTCTGCAAGTC
TGTACTCAAGTTACTTCTGAGAAAACGAATATTCGTGTACATCGTGCCTG
CTCACGAGCGCAGCGGTGTGCGCAGGTCGAGGAAAAATAACAAATTGCAC
GAGGGCAGCCATGGCTCCTCTGCTAGTTATACATAGACTCTGGCCCGGAA
TGTAGCTGGGACCATGGGATACCTGGATACCATCCCCGGGTTCGTGAAGC
AGTAAAGGTTATAGCGTAACATGTACAAATCCCAGATGTATTTCGGGACA
GTGGTATCTCTCTCTCTCTCTATATATATATATATATACACACACACAGG
AACATGTGTAATTTCTTGTTTTGGAATCATAATTTCCAGGGGTATTTCGA
TTTGAATTTTCCGGGAAATGCCACCAAGTCCGTAAGAGTATGAAATTATT
GTTATAGTTGTCTTCCAACAGTGTGGAGACTCGGATAATGACGATTGGTA
AGCCAAGGAGGAATGGCAATCCAAAGAGCCCGCAGTAGAAAATTCATCAA
ATGCACATCAATACAGCACCGCTTCCCCAAAAAAGAAAATCAGAGAGAAG
AGAATGTGAGTCCCGAATTTTGATTCATAATTAATAATTTTCCCCATGAA
TAAGAAACTAAGCTCAACTGATGGGACTAATATCCTCTTTTTTAGTTCCT
ACATATTATTATTATATTGCGAATGAAAATTAGTAAAAAATGGGGTTTTA
GCCTCACCAAATAAGATTGTCTCGTTAGAGGGGCGGTTCTGTATTCTGTC
TGTATGGAGTAATCTCCTCTTTTCAGCTCCAAAAAAGACGTGTCGATGAG
CTACGTGACAAAACCGGTGAAGGACTCTCGGGGACATAGATCAATTGATT
GCTTCTTTTTACTACTCTAGTACACAAAGACATGCTGAAGTCGGTCTTCA
CTCCAACTACAGCATTCCAATGTAGGCGTTGCGTACGTATTAGATTCCTA
CAGTAGGCGTCTCGGAATGTTTTTTTTCGGTGGGTGTGCTTCCGATGTTG
TATCCCTTTTAAAATCTATACGATGATACTTACGTGGTTTCCTGGCGTAG
CGTAGGCAAGGGTAGTCCAGAGTACGTATTGGTAGTTTACGGTGAATAAC
ACACCCGGTACAAAAAAGGAAACGTTCATTTACCTGAATTTTCTCGAGAA
AGCAGGCACCCCCTGCACTGCCTGTCGATAGAGCATCCCTCTCTAATGGC
AATATATATATATATTCACACATCATATGTGTCGACCACGTCTTCCAATG
GCCCAATTTTCTTGGTGTCGCGAGCTAGCCCCGCCGTACTTTCTTAGAAA
ATCGGCTTTTCAAGAATTGCGAATGTCCCGTACATGCCCCTTTCGTTTCC
TCCTTGGTTCGTTCATCCAACGTTAGAACTCAAGATTTCTTCCCAAGAAG
CTTTGGCCATCCTCAGACATATTTCGGCGGCTTCGGGGGCATCAAGGCCA
GCGACAGCGGAGGCGCGGGCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig14889:2063..3985+

>mRNA_H-paniculata_contig14889.2912.1 ID=mRNA_H-paniculata_contig14889.2912.1|Name=mRNA_H-paniculata_contig14889.2912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig14889:2063..3985+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAAAATTATCAAGTGCGGAATAGCGGTCCCTTGTTGTTCTTCTGCTCC
TTTGTCTTCCATCATGAGTGCCCGCCCCATGGCCCCAGCATTGGCAAGCA
CCGAGCTTTCCAGCCTGCCGCTTGCCCCGGGAGTGGTGGATAGGCTATTG
CGATCCGGATTTCGAACGCTGAGAGACGTGGACGGCGTCCAGCCGATGGA
TTTGTCTCGAGCAGAAAATTATCAAGTGCGGAATAGCGGTCCCTTGTTGT
TCTTCTGCTCCTTTGTCTTCCATCATGAGTGCCCGCCCCATGGCCCCAGC
ATTGGCAAGCACCGAGCTTTCCAGCCTGCCGCTTGCCCCGGGAGTGGTGG
ATAGGCTATTGCGATCCGGATTTCGAACGCTGAGAGACGTGGACGGCGTC
CAGCCGATGGATTTGTCTCGAGAACTCAAGATTTCTTCCCAAGAAGCTTT
GGCCATCCTCAGACATATTTCGGCGGCTTCGGGGGCATCAAGGCCAGCGA
CAGCGGAGGCGCGGGCGAACTCAAGATTTCTTCCCAAGAAGCTTTGGCCA
TCCTCAGACATATTTCGGCGGCTTCGGGGGCATCAAGGCCAGCGACAGCG
GAGGCGCGGGCG
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