prot_H-paniculata_contig14889.2912.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig14889.2912.1
Unique Nameprot_H-paniculata_contig14889.2912.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length102
Homology
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BLAST of mRNA_H-paniculata_contig14889.2912.1 vs. uniprot
Match: A0A6H5KSG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG9_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 9.290e-26
Identity = 54/71 (76.06%), Postives = 63/71 (88.73%), Query Frame = 0 
Query:   22 MSARPMAPALASTELSSLPLAPGVVDRLLRSGFRTLRDVDGVQPMDLSRELKISSQEALAILRHISAASGA 92
            M+  PM PA+A TELSSLP+AP   DRLLR+GFRTLRDV+GVQP+DLSRELK+SSQEALAILR I+AA+GA
Sbjct:    1 MNVPPMGPAMARTELSSLPIAPSNRDRLLRAGFRTLRDVEGVQPLDLSRELKVSSQEALAILRDIAAATGA 71
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BLAST of mRNA_H-paniculata_contig14889.2912.1 vs. uniprot
Match: L8GZY9_ACACA (RAD51, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GZY9_ACACA)

HSP 1 Score: 55.8 bits (133), Expect = 6.650e-7
Identity = 22/52 (42.31%), Postives = 44/52 (84.62%), Query Frame = 0 
Query:   35 ELSSLPLAPGVVDRLLRSGFRTLRDVDGVQPMDLSRELKISSQEALAILRHI 86
            ++++LPL P + ++++++GFR +RD DG +P++L++EL+++ +EAL+ILR I
Sbjct:    8 DITTLPLPPTLKNKIVQAGFRDVRDFDGYRPVELAKELRVTQEEALSILRTI 59
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BLAST of mRNA_H-paniculata_contig14889.2912.1 vs. uniprot
Match: A0A6P4XU31_BRABE (DNA repair protein RAD51 homolog 3-like n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4XU31_BRABE)

HSP 1 Score: 51.2 bits (121), Expect = 2.880e-5
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 0 
Query:   33 STELSSLPLAPGVVDRLLRSGFRTLRDVDGVQPMDLSRELKISSQEALAILR 84
            S  + S PL P +  +LL  GF T+ D++ ++P++LS+ELKIS +EAL ILR
Sbjct:    2 SRHVGSYPLPPYLKTKLLAGGFSTVEDLEDLKPVELSKELKISPEEALEILR 53
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14889.2912.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KSG9_9PHAE9.290e-2676.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
L8GZY9_ACACA6.650e-742.31RAD51, putative n=1 Tax=Acanthamoeba castellanii s... [more]
A0A6P4XU31_BRABE2.880e-548.08DNA repair protein RAD51 homolog 3-like n=3 Tax=Br... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 33..102
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14889contigH-paniculata_contig14889:2063..3983 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14889.2912.1mRNA_H-paniculata_contig14889.2912.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig14889 2063..3985 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig14889.2912.1 ID=prot_H-paniculata_contig14889.2912.1|Name=mRNA_H-paniculata_contig14889.2912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
QKIIKCGIAVPCCSSAPLSSIMSARPMAPALASTELSSLPLAPGVVDRLL
RSGFRTLRDVDGVQPMDLSRELKISSQEALAILRHISAASGASRPATAEA
RA
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