mRNA_H-paniculata_contig14850.2888.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14850.2888.1
Unique NamemRNA_H-paniculata_contig14850.2888.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14850.2888.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 8.650e-57
Identity = 125/326 (38.34%), Postives = 186/326 (57.06%), Query Frame = 1
Query:    7 VHYTEKCSPAPATASIRMLLATAGAKDGELRHFDAKQAFLKADVDEEVYIEIPERFQHFPGAMGKLNKAIYGLVQPGRCWNITFCD-MTAIGSEQSRADPSIFRKVVDRGVEIVVIVHVDDILARAKDCETMEWFAIELGGRFKLKDLGDAEFYMDCHATRNRKARELKLGQDMYVKSKAEKFDVEKTSRIPAMSGAPALSKEDEPKTPEEK*EMKKSPYREAAGALMWTATMTRPDIACAVRSVTRFYNYPGSAHKKAVIKIVQYLLHTIE*GIIYGGQGCGLSMEAYANSDFRDCFDIRRSVSGGVVTLAKGAISWHSRDYSIL 981
            V Y    SP P++ASI+++LA A  K   L H+D KQA+  A +DEEV++++P         + K  +AIYGL Q GR W     D +   G EQ +ADP +FRK+VD+ V ++++++VDDIL    D E  E     L  +F  K+LG+ +++  C   R+ +A  L++ Q  Y+ S  E+FDV+ TSRIPA  GA    K ++ +  E        P REA G++MW +T +RPD++ AVR+V R  + P   H  A+ KI+ YL  T + GI Y  +G GL +  Y ++ + D  D RRSVSG   T+    +S  S+  SI+
Sbjct: 1215 VDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSD-EDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGE-------WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIV 1530          
BLAST of mRNA_H-paniculata_contig14850.2888.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 1.080e-56
Identity = 125/326 (38.34%), Postives = 185/326 (56.75%), Query Frame = 1
Query:    7 VHYTEKCSPAPATASIRMLLATAGAKDGELRHFDAKQAFLKADVDEEVYIEIPERFQHFPGAMGKLNKAIYGLVQPGRCWNITFCD-MTAIGSEQSRADPSIFRKVVDRGVEIVVIVHVDDILARAKDCETMEWFAIELGGRFKLKDLGDAEFYMDCHATRNRKARELKLGQDMYVKSKAEKFDVEKTSRIPAMSGAPALSKEDEPKTPEEK*EMKKSPYREAAGALMWTATMTRPDIACAVRSVTRFYNYPGSAHKKAVIKIVQYLLHTIE*GIIYGGQGCGLSMEAYANSDFRDCFDIRRSVSGGVVTLAKGAISWHSRDYSIL 981
            V Y    SP P++ASI+++LA A  K   L H+D KQA+  A +DEEV++++P         + K  +AIYGL Q GR W     D +   G EQ +ADP +FRK+VD  V ++++++VDDIL    D E  E     L  +F  K+LG+ +++  C   R+ +A  L++ Q  Y+ S  E+FDV+ TSRIPA  GA    K ++ +  E        P REA G++MW +T +RPD++ AVR+V R  + P   H  A+ KI+ YL  T + GI Y  +G GL +  Y ++ + D  D RRSVSG   T+    +S  S+  SI+
Sbjct:  816 VDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSD-EDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGE-------WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIV 1131          
BLAST of mRNA_H-paniculata_contig14850.2888.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 1.170e-56
Identity = 125/326 (38.34%), Postives = 185/326 (56.75%), Query Frame = 1
Query:    7 VHYTEKCSPAPATASIRMLLATAGAKDGELRHFDAKQAFLKADVDEEVYIEIPERFQHFPGAMGKLNKAIYGLVQPGRCWNITFCD-MTAIGSEQSRADPSIFRKVVDRGVEIVVIVHVDDILARAKDCETMEWFAIELGGRFKLKDLGDAEFYMDCHATRNRKARELKLGQDMYVKSKAEKFDVEKTSRIPAMSGAPALSKEDEPKTPEEK*EMKKSPYREAAGALMWTATMTRPDIACAVRSVTRFYNYPGSAHKKAVIKIVQYLLHTIE*GIIYGGQGCGLSMEAYANSDFRDCFDIRRSVSGGVVTLAKGAISWHSRDYSIL 981
            V Y    SP P++ASI+++LA A  K   L H+D KQA+  A +DEEV++++P         + K  +AIYGL Q GR W     D +   G EQ +ADP +FRK+VD  V ++++++VDDIL    D E  E     L  +F  K+LG+ +++  C   R+ +A  L++ Q  Y+ S  E+FDV+ TSRIPA  GA    K ++ +  E        P REA G++MW +T +RPD++ AVR+V R  + P   H  A+ KI+ YL  T + GI Y  +G GL +  Y ++ + D  D RRSVSG   T+    +S  S+  SI+
Sbjct: 1195 VDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSD-EDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGE-------WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIV 1510          
BLAST of mRNA_H-paniculata_contig14850.2888.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 1.190e-56
Identity = 125/326 (38.34%), Postives = 185/326 (56.75%), Query Frame = 1
Query:    7 VHYTEKCSPAPATASIRMLLATAGAKDGELRHFDAKQAFLKADVDEEVYIEIPERFQHFPGAMGKLNKAIYGLVQPGRCWNITFCD-MTAIGSEQSRADPSIFRKVVDRGVEIVVIVHVDDILARAKDCETMEWFAIELGGRFKLKDLGDAEFYMDCHATRNRKARELKLGQDMYVKSKAEKFDVEKTSRIPAMSGAPALSKEDEPKTPEEK*EMKKSPYREAAGALMWTATMTRPDIACAVRSVTRFYNYPGSAHKKAVIKIVQYLLHTIE*GIIYGGQGCGLSMEAYANSDFRDCFDIRRSVSGGVVTLAKGAISWHSRDYSIL 981
            V Y    SP P++ASI+++LA A  K   L H+D KQA+  A +DEEV++++P         + K  +AIYGL Q GR W     D +   G EQ +ADP +FRK+VD  V ++++++VDDIL    D E  E     L  +F  K+LG+ +++  C   R+ +A  L++ Q  Y+ S  E+FDV+ TSRIPA  GA    K ++ +  E        P REA G++MW +T +RPD++ AVR+V R  + P   H  A+ KI+ YL  T + GI Y  +G GL +  Y ++ + D  D RRSVSG   T+    +S  S+  SI+
Sbjct: 1358 VDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSD-EDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGE-------WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIV 1673          
BLAST of mRNA_H-paniculata_contig14850.2888.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 4.780e-56
Identity = 123/326 (37.73%), Postives = 182/326 (55.83%), Query Frame = 1
Query:    7 VHYTEKCSPAPATASIRMLLATAGAKDGELRHFDAKQAFLKADVDEEVYIEIPERFQHFPGAMGKLNKAIYGLVQPGRCWNITFCD-MTAIGSEQSRADPSIFRKVVDRGVEIVVIVHVDDILARAKDCETMEWFAIELGGRFKLKDLGDAEFYMDCHATRNRKARELKLGQDMYVKSKAEKFDVEKTSRIPAMSGAPALSKEDEPKTPEEK*EMKKSPYREAAGALMWTATMTRPDIACAVRSVTRFYNYPGSAHKKAVIKIVQYLLHTIE*GIIYGGQGCGLSMEAYANSDFRDCFDIRRSVSGGVVTLAKGAISWHSRDYSIL 981
            V Y    SP P++ASI+++LA A  K   L H+D KQA+  A +DEEV++++P         + K  +AIYGL Q GR W     D +   G EQ +ADP +FRK+VD  V ++++++VDDIL    D E  E     L  +F  K+L + +++  C   R+ +   L++ Q  Y+ S  ++FDV+ TSRIPA  G     K D+ K  E        P REA G++MW +T +RPD++ AVR+V R  + P   H  A+ KI+ YL  T + GI Y  +G GL +  Y ++ + D  D RRSVSG   T+    +S  S+  SI+
Sbjct:  370 VDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSD-EDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGGE-------WPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIV 685          
BLAST of mRNA_H-paniculata_contig14850.2888.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 5.360e-55
Identity = 123/319 (38.56%), Postives = 181/319 (56.74%), Query Frame = 1
Query:   28 SPAPATASIRMLLATAGAKDGELRHFDAKQAFLKADVDEEVYIEIPERFQHFPGAMGKLNKAIYGLVQPGRCWNITFCD-MTAIGSEQSRADPSIFRKVVDRGVEIVVIVHVDDILARAKDCETMEWFAIELGGRFKLKDLGDAEFYMDCHATRNRKARELKLGQDMYVKSKAEKFDVEKTSRIPAMSGAPALSKEDEPKTPEEK*EMKKSPYREAAGALMWTATMTRPDIACAVRSVTRFYNYPGSAHKKAVIKIVQYLLHTIE*GIIYGGQGCGLSMEAYANSDFRDCFDIRRSVSGGVVTLAKGAISWHSRDYSIL 981
            SP P++ASI+++LA A  K   L H+D KQA+  A +DEEV++++P         + K  +AIYGL Q GR W     D +   G EQ +ADP +FRK+VD  V ++++++VDDIL    D E  E     L  +F  K+LG+ +++  C   R+  A  L++ Q  Y+ S  E+FDV+ TSRIPA  GA    K ++ K  E        P REA G++MW +T +RPD++ AVR+V R  + P   H  A+ KI+ YL  T + GI Y  +G GL +  Y ++ + D  D RRSVS    T+    +S  S+  SI+
Sbjct:  414 SPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSD-EDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGE-------WPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDARYADTED-RRSVSRLATTVGGTVVSHGSKARSIV 722          
BLAST of mRNA_H-paniculata_contig14850.2888.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 8.480e-55
Identity = 122/319 (38.24%), Postives = 181/319 (56.74%), Query Frame = 1
Query:   19 EKCSPAPATASIRMLLATAGAKDGELRHFDAKQAFLKADVDEEVYIEIPERFQHFPGAMGKLNKAIYGLVQPGRCWN--ITFCDMTAIGSEQSRADPSIFRKVVDRGVEIVVIVHVDDILARAKDCETMEWFAIELGGRFKLKDLGDAEFYMDCHATRNRKARELKLGQDMYVKSKAEKFDVEKTSRIPAMSGAPALSKEDEPKTPEEK*EMKKSPYREAAGALMWTATMTRPDIACAVRSVTRFYNYPGSAHKKAVIKIVQYLLHTIE*GIIYG-GQGCGLSMEAYANSDFRDCFDIRRSVSGGVVTLAKGAISWHSR 966
            E  +P  A +S+R+L A A  ++  LRHFD KQAF+++D+DE+V++ +PE      G + KLNK++YGL Q  R W+  +  C +  +G  Q  AD  +FR + +  V + ++VHVDDI +  ++ E  + F  +L     +K+LGD  +Y  C   R+  A  LK+ Q  Y +    +F VE    IP   G   LS+ D+ +      E+   P+RE  G+LMW AT TRPDIA AVR+V R+   P   H +A + I+ Y++ T + GI +  G   GLSME + ++D+      RRSVSGG+V    G ISW SR
Sbjct:   10 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARC-LICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEE-ERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQDE------EVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSR 319          
BLAST of mRNA_H-paniculata_contig14850.2888.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 1.760e-53
Identity = 123/326 (37.73%), Postives = 173/326 (53.07%), Query Frame = 1
Query:    7 VHYTEKCSPAPATASIRMLLATAGAKDGELRHFDAKQAFLKADVDEEVYIEIPERFQHFPGAMGKLNKAIYGLVQPGRCWNITFCD-MTAIGSEQSRADPSIFRKVVDRGVEIVVIVHVDDILARAKDCETMEWFAIELGGRFKLKDLGDAEFYMDCHATRNRKARELKLGQDMYVKSKAEKFDVEKTSRIPAMSGAPALSKEDEPKTPEEK*EMKKSPYREAAGALMWTATMTRPDIACAVRSVTRFYNYPGSAHKKAVIKIVQYLLHTIE*GIIYGGQGCGLSMEAYANSDFRDCFDIRRSVSGGVVTLAKGAISWHSRDYSIL 981
            V Y    SP P++ASI+++LA A  K  +L H+D KQAF  A +DE+V++ +P         + K  +AIYGL Q GR W     D +   G EQ +ADP +FRK+ D  V        D IL    D +  E  A  L   F  KDLG+  ++  C   R+ +A  L++ Q  Y+ S   +FDV+ TS IPA  G     K D+    E        P REA G++MW +T +RPDI+ AVR+V R  + P   H KA++KI+ YL  T + GI Y  +G GL +  Y ++ + D  D RRSVSG   T+    IS  S+  +I+
Sbjct:   79 VDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLA-SLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGE-------WPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYE-RGSGLGLAVYVDASYADAED-RRSVSGLATTVGGTVISHGSKTQAIV 394          
BLAST of mRNA_H-paniculata_contig14850.2888.1 vs. uniprot
Match: A0A2K3MAN7_TRIPR (Retrotransposon protein putative Ty1-copia subclass (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MAN7_TRIPR)

HSP 1 Score: 192 bits (487), Expect = 2.210e-53
Identity = 122/326 (37.42%), Postives = 183/326 (56.13%), Query Frame = 1
Query:    1 EGVHYTEKCSPAPATASIRMLLATAGAKDGELRHFDAKQAFLKADVDEEVYIEIPERFQHFP--GAMGKLNKAIYGLVQPGRCWNITFCD-MTAIGSEQSRADPSIFRKVVDRGVEIVVIVHVDDILARAKDCETMEWFAIELGGRFKLKDLGDAEFYMDCHATRNRKARELKLGQDMYVKSKAEKFDVEKTSR--IPAMSGAPALSKEDEPKTPEEK*EMKKSPYREAAGALMWTATMTRPDIACAVRSVTRFYNYPGSAHKKAVIKIVQYLLHTIE*GIIYGGQGCGLSMEAYANSDFRDCFDIRRSVSGGVVTLAKGAISWHS 963
            EG+ Y E  SP     SIR+LLA A   D E+   D K AFL  ++ EEVY+  PE F        + KL ++IYGL Q  R WNI F + +      +   +P +++K+    + I ++++VDDIL    D  +M+   + L  +F +KDLG+A + +     R+R  R L L Q MY+ +  +++++EK+ R  +P   G  +LS+E+ PKT EE+  M + PY  A GA+M+T T TRPD+A A+   +R+   PG  H K V  I++YL  T +  +IYG     LS++ Y ++ F    D  +S+SG V TL  GAISW S
Sbjct:  169 EGIDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGELKEEVYMTQPEGFTSLSDHNKVCKLQRSIYGLKQASRSWNIRFNNTIEKFNFVKCEEEPCVYKKISGSSI-IFLVLYVDDILLFGNDIPSMQSTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMEKSKRGYLPVGMGV-SLSRENCPKTLEERERMSRVPYASAVGAIMYTMTCTRPDVAYALGVTSRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGNSE--LSLKGYTDASFASDKDDSKSISGYVFTLNGGAISWKS 490          
BLAST of mRNA_H-paniculata_contig14850.2888.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 2.510e-53
Identity = 122/319 (38.24%), Postives = 181/319 (56.74%), Query Frame = 1
Query:   19 EKCSPAPATASIRMLLATAGAKDGELRHFDAKQAFLKADVDEEVYIEIPERFQHFPGAMGKLNKAIYGLVQPGRCWN--ITFCDMTAIGSEQSRADPSIFRKVVDRGVEIVVIVHVDDILARAKDCETMEWFAIELGGRFKLKDLGDAEFYMDCHATRNRKARELKLGQDMYVKSKAEKFDVEKTSRIPAMSGAPALSKEDEPKTPEEK*EMKKSPYREAAGALMWTATMTRPDIACAVRSVTRFYNYPGSAHKKAVIKIVQYLLHTIE*GIIYG-GQGCGLSMEAYANSDFRDCFDIRRSVSGGVVTLAKGAISWHSR 966
            E  +P  A +S+R+L A A  ++  LRHFD KQAF+++D+DE+V++ +PE      G + KLNK++YGL Q  R W+  +  C +  +G  Q  AD  +FR + +  V + ++VHVDDI +  ++ E  + F  +L     +K+LGD  +Y  C   R+  A  LK+ Q  Y +    +F VE    IP   G   LS+ D+ +      E+   P+RE  G+LMW AT TRPDIA AVR+V R+   P   H +A + I+ Y++ T + GI +  G   GLSME + ++D+      RRSVSGG+V    G ISW SR
Sbjct:  184 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARC-LICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEE-ERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQDE------EVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSR 493          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14850.2888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JN00_9PHAE8.650e-5738.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSG8_9PHAE1.080e-5638.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.170e-5638.34Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.190e-5638.34Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JC10_9PHAE4.780e-5637.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQN6_9PHAE5.360e-5538.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE8.480e-5538.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCG0_9PHAE1.760e-5337.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2K3MAN7_TRIPR2.210e-5337.42Retrotransposon protein putative Ty1-copia subclas... [more]
A0A6H5KQB8_9PHAE2.510e-5338.24Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14850contigH-paniculata_contig14850:5481..6461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score110.5
Seed ortholog evalue8.7e-22
Seed eggNOG ortholog5111.M1VW57
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs21AV1@147550,38DPC@33154,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelSordariomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size981
Cds size585
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14850.2888.1prot_H-paniculata_contig14850.2888.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14850 5538..6122 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929181.9667165-UTR-H-paniculata_contig14850:5480..55371622929181.9667165-UTR-H-paniculata_contig14850:5480..5537Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14850 5481..5537 +
1691480762.993652-UTR-H-paniculata_contig14850:5480..55371691480762.993652-UTR-H-paniculata_contig14850:5480..5537Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14850 5481..5537 +
1622929182.009272-UTR-H-paniculata_contig14850:6122..64611622929182.009272-UTR-H-paniculata_contig14850:6122..6461Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14850 6123..6461 +
1691480763.0140293-UTR-H-paniculata_contig14850:6122..64611691480763.0140293-UTR-H-paniculata_contig14850:6122..6461Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14850 6123..6461 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929181.9913077-CDS-H-paniculata_contig14850:5537..61221622929181.9913077-CDS-H-paniculata_contig14850:5537..6122Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14850 5538..6122 +
1691480763.0054314-CDS-H-paniculata_contig14850:5537..61221691480763.0054314-CDS-H-paniculata_contig14850:5537..6122Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14850 5538..6122 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14850.2888.1

>prot_H-paniculata_contig14850.2888.1 ID=prot_H-paniculata_contig14850.2888.1|Name=mRNA_H-paniculata_contig14850.2888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=195bp
MLLATAGAKDGELRHFDAKQAFLKADVDEEVYIEIPERFQHFPGAMGKLN
KAIYGLVQPGRCWNITFCDMTAIGSEQSRADPSIFRKVVDRGVEIVVIVH
VDDILARAKDCETMEWFAIELGGRFKLKDLGDAEFYMDCHATRNRKAREL
KLGQDMYVKSKAEKFDVEKTSRIPAMSGAPALSKEDEPKTPEEK*
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mRNA from alignment at H-paniculata_contig14850:5481..6461+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14850.2888.1 ID=mRNA_H-paniculata_contig14850.2888.1|Name=mRNA_H-paniculata_contig14850.2888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=981bp|location=Sequence derived from alignment at H-paniculata_contig14850:5481..6461+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGGTGTACACTACACCGAGAAGTGCTCACCTGCGCCGGCGACTGCGTC CATCCGGATGCTCTTGGCGACCGCAGGGGCGAAGGACGGAGAGCTGCGAC ATTTCGACGCAAAACAGGCGTTTCTGAAGGCGGACGTTGACGAGGAGGTG TACATCGAGATCCCCGAAAGGTTCCAACATTTCCCGGGAGCAATGGGTAA GCTGAACAAGGCAATCTACGGGCTCGTTCAACCGGGGCGATGCTGGAACA TCACGTTCTGCGACATGACGGCAATCGGGTCCGAGCAATCAAGGGCAGAC CCGTCTATATTCAGGAAGGTCGTCGACAGAGGGGTGGAAATTGTGGTCAT CGTGCACGTGGACGACATTCTTGCCCGCGCAAAGGACTGCGAGACAATGG AGTGGTTCGCAATCGAGCTAGGAGGAAGGTTCAAGCTGAAGGACTTAGGT GACGCCGAGTTCTACATGGATTGTCACGCTACCCGAAACAGGAAGGCGCG CGAGTTGAAACTCGGTCAAGACATGTACGTGAAGTCGAAGGCGGAAAAAT TCGATGTTGAAAAGACGAGCAGGATACCAGCCATGTCGGGAGCACCAGCA CTATCAAAAGAGGACGAACCGAAGACCCCGGAGGAGAAGTAGGAGATGAA GAAATCCCCATATCGAGAGGCAGCGGGGGCGCTAATGTGGACGGCAACGA TGACGCGACCGGATATAGCATGCGCAGTACGTTCTGTCACAAGGTTCTAC AACTACCCCGGGTCAGCACACAAGAAGGCGGTAATTAAGATAGTGCAGTA TTTATTACACACGATAGAATAGGGCATCATATATGGCGGACAAGGCTGTG GGCTGAGCATGGAAGCATATGCGAACTCGGATTTCAGAGACTGCTTCGAC ATTAGACGCTCGGTATCTGGTGGAGTCGTGACGTTGGCGAAGGGGGCGAT AAGCTGGCATTCTAGGGATTACAGCATATTG
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Coding sequence (CDS) from alignment at H-paniculata_contig14850:5481..6461+

>mRNA_H-paniculata_contig14850.2888.1 ID=mRNA_H-paniculata_contig14850.2888.1|Name=mRNA_H-paniculata_contig14850.2888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1170bp|location=Sequence derived from alignment at H-paniculata_contig14850:5481..6461+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCTTGGCGACCGCAGGGGCGAAGGACGGAGAGCTGCGACATTTCGA
CGCAAAACAGGCGTTTCTGAAGGCGGACGTTGACGAGGAGGTGTACATCG
AGATCCCCGAAAGGTTCCAACATTTCCCGGGAGCAATGGGTAAGCTGAAC
AAGGCAATCTACGGGCTCGTTCAACCGGGGCGATGCTGGAACATCACGTT
CTGCGACATGACGGCAATCGGGTCCGAGCAATCAAGGGCAGACCCGTCTA
TATTCAGGAAGGTCGTCGACAGAGGGGTGGAAATTGTGGTCATCGTGCAC
GTGGACGACATTCTTGCCCGCGCAAAGGACTGCGAGACAATGGAGTGGTT
CGCAATCGAGCTAGGAGGAAGGTTCAAGCTGAAGGACTTAGGTGACGCCG
AGTTCTACATGGATTGTCACGCTACCCGAAACAGGAAGGCGCGCGAGTTG
AAACTCGGTCAAGACATGTACGTGAAGTCGAAGGCGGAAAAATTCGATGT
TGAAAAGACGAGCAGGATACCAGCCATGTCGGGAGCACCAGCACTATCAA
AAGAGGACGAACCGAAGACCCCGGAGGAGAAGTAGATGCTCTTGGCGACC
GCAGGGGCGAAGGACGGAGAGCTGCGACATTTCGACGCAAAACAGGCGTT
TCTGAAGGCGGACGTTGACGAGGAGGTGTACATCGAGATCCCCGAAAGGT
TCCAACATTTCCCGGGAGCAATGGGTAAGCTGAACAAGGCAATCTACGGG
CTCGTTCAACCGGGGCGATGCTGGAACATCACGTTCTGCGACATGACGGC
AATCGGGTCCGAGCAATCAAGGGCAGACCCGTCTATATTCAGGAAGGTCG
TCGACAGAGGGGTGGAAATTGTGGTCATCGTGCACGTGGACGACATTCTT
GCCCGCGCAAAGGACTGCGAGACAATGGAGTGGTTCGCAATCGAGCTAGG
AGGAAGGTTCAAGCTGAAGGACTTAGGTGACGCCGAGTTCTACATGGATT
GTCACGCTACCCGAAACAGGAAGGCGCGCGAGTTGAAACTCGGTCAAGAC
ATGTACGTGAAGTCGAAGGCGGAAAAATTCGATGTTGAAAAGACGAGCAG
GATACCAGCCATGTCGGGAGCACCAGCACTATCAAAAGAGGACGAACCGA
AGACCCCGGAGGAGAAGTAG
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