mRNA_H-paniculata_contig14850.2888.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig14850.2888.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 208 bits (530), Expect = 8.650e-57 Identity = 125/326 (38.34%), Postives = 186/326 (57.06%), Query Frame = 1 Query: 7 VHYTEKCSPAPATASIRMLLATAGAKDGELRHFDAKQAFLKADVDEEVYIEIPERFQHFPGAMGKLNKAIYGLVQPGRCWNITFCD-MTAIGSEQSRADPSIFRKVVDRGVEIVVIVHVDDILARAKDCETMEWFAIELGGRFKLKDLGDAEFYMDCHATRNRKARELKLGQDMYVKSKAEKFDVEKTSRIPAMSGAPALSKEDEPKTPEEK*EMKKSPYREAAGALMWTATMTRPDIACAVRSVTRFYNYPGSAHKKAVIKIVQYLLHTIE*GIIYGGQGCGLSMEAYANSDFRDCFDIRRSVSGGVVTLAKGAISWHSRDYSIL 981 V Y SP P++ASI+++LA A K L H+D KQA+ A +DEEV++++P + K +AIYGL Q GR W D + G EQ +ADP +FRK+VD+ V ++++++VDDIL D E E L +F K+LG+ +++ C R+ +A L++ Q Y+ S E+FDV+ TSRIPA GA K ++ + E P REA G++MW +T +RPD++ AVR+V R + P H A+ KI+ YL T + GI Y +G GL + Y ++ + D D RRSVSG T+ +S S+ SI+ Sbjct: 1215 VDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSD-EDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGE-------WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIV 1530
BLAST of mRNA_H-paniculata_contig14850.2888.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 208 bits (529), Expect = 1.080e-56 Identity = 125/326 (38.34%), Postives = 185/326 (56.75%), Query Frame = 1 Query: 7 VHYTEKCSPAPATASIRMLLATAGAKDGELRHFDAKQAFLKADVDEEVYIEIPERFQHFPGAMGKLNKAIYGLVQPGRCWNITFCD-MTAIGSEQSRADPSIFRKVVDRGVEIVVIVHVDDILARAKDCETMEWFAIELGGRFKLKDLGDAEFYMDCHATRNRKARELKLGQDMYVKSKAEKFDVEKTSRIPAMSGAPALSKEDEPKTPEEK*EMKKSPYREAAGALMWTATMTRPDIACAVRSVTRFYNYPGSAHKKAVIKIVQYLLHTIE*GIIYGGQGCGLSMEAYANSDFRDCFDIRRSVSGGVVTLAKGAISWHSRDYSIL 981 V Y SP P++ASI+++LA A K L H+D KQA+ A +DEEV++++P + K +AIYGL Q GR W D + G EQ +ADP +FRK+VD V ++++++VDDIL D E E L +F K+LG+ +++ C R+ +A L++ Q Y+ S E+FDV+ TSRIPA GA K ++ + E P REA G++MW +T +RPD++ AVR+V R + P H A+ KI+ YL T + GI Y +G GL + Y ++ + D D RRSVSG T+ +S S+ SI+ Sbjct: 816 VDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSD-EDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGE-------WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIV 1131
BLAST of mRNA_H-paniculata_contig14850.2888.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 208 bits (529), Expect = 1.170e-56 Identity = 125/326 (38.34%), Postives = 185/326 (56.75%), Query Frame = 1 Query: 7 VHYTEKCSPAPATASIRMLLATAGAKDGELRHFDAKQAFLKADVDEEVYIEIPERFQHFPGAMGKLNKAIYGLVQPGRCWNITFCD-MTAIGSEQSRADPSIFRKVVDRGVEIVVIVHVDDILARAKDCETMEWFAIELGGRFKLKDLGDAEFYMDCHATRNRKARELKLGQDMYVKSKAEKFDVEKTSRIPAMSGAPALSKEDEPKTPEEK*EMKKSPYREAAGALMWTATMTRPDIACAVRSVTRFYNYPGSAHKKAVIKIVQYLLHTIE*GIIYGGQGCGLSMEAYANSDFRDCFDIRRSVSGGVVTLAKGAISWHSRDYSIL 981 V Y SP P++ASI+++LA A K L H+D KQA+ A +DEEV++++P + K +AIYGL Q GR W D + G EQ +ADP +FRK+VD V ++++++VDDIL D E E L +F K+LG+ +++ C R+ +A L++ Q Y+ S E+FDV+ TSRIPA GA K ++ + E P REA G++MW +T +RPD++ AVR+V R + P H A+ KI+ YL T + GI Y +G GL + Y ++ + D D RRSVSG T+ +S S+ SI+ Sbjct: 1195 VDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSD-EDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGE-------WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIV 1510
BLAST of mRNA_H-paniculata_contig14850.2888.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 208 bits (529), Expect = 1.190e-56 Identity = 125/326 (38.34%), Postives = 185/326 (56.75%), Query Frame = 1 Query: 7 VHYTEKCSPAPATASIRMLLATAGAKDGELRHFDAKQAFLKADVDEEVYIEIPERFQHFPGAMGKLNKAIYGLVQPGRCWNITFCD-MTAIGSEQSRADPSIFRKVVDRGVEIVVIVHVDDILARAKDCETMEWFAIELGGRFKLKDLGDAEFYMDCHATRNRKARELKLGQDMYVKSKAEKFDVEKTSRIPAMSGAPALSKEDEPKTPEEK*EMKKSPYREAAGALMWTATMTRPDIACAVRSVTRFYNYPGSAHKKAVIKIVQYLLHTIE*GIIYGGQGCGLSMEAYANSDFRDCFDIRRSVSGGVVTLAKGAISWHSRDYSIL 981 V Y SP P++ASI+++LA A K L H+D KQA+ A +DEEV++++P + K +AIYGL Q GR W D + G EQ +ADP +FRK+VD V ++++++VDDIL D E E L +F K+LG+ +++ C R+ +A L++ Q Y+ S E+FDV+ TSRIPA GA K ++ + E P REA G++MW +T +RPD++ AVR+V R + P H A+ KI+ YL T + GI Y +G GL + Y ++ + D D RRSVSG T+ +S S+ SI+ Sbjct: 1358 VDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSD-EDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGE-------WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIV 1673
BLAST of mRNA_H-paniculata_contig14850.2888.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE) HSP 1 Score: 204 bits (518), Expect = 4.780e-56 Identity = 123/326 (37.73%), Postives = 182/326 (55.83%), Query Frame = 1 Query: 7 VHYTEKCSPAPATASIRMLLATAGAKDGELRHFDAKQAFLKADVDEEVYIEIPERFQHFPGAMGKLNKAIYGLVQPGRCWNITFCD-MTAIGSEQSRADPSIFRKVVDRGVEIVVIVHVDDILARAKDCETMEWFAIELGGRFKLKDLGDAEFYMDCHATRNRKARELKLGQDMYVKSKAEKFDVEKTSRIPAMSGAPALSKEDEPKTPEEK*EMKKSPYREAAGALMWTATMTRPDIACAVRSVTRFYNYPGSAHKKAVIKIVQYLLHTIE*GIIYGGQGCGLSMEAYANSDFRDCFDIRRSVSGGVVTLAKGAISWHSRDYSIL 981 V Y SP P++ASI+++LA A K L H+D KQA+ A +DEEV++++P + K +AIYGL Q GR W D + G EQ +ADP +FRK+VD V ++++++VDDIL D E E L +F K+L + +++ C R+ + L++ Q Y+ S ++FDV+ TSRIPA G K D+ K E P REA G++MW +T +RPD++ AVR+V R + P H A+ KI+ YL T + GI Y +G GL + Y ++ + D D RRSVSG T+ +S S+ SI+ Sbjct: 370 VDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSD-EDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGGE-------WPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIV 685
BLAST of mRNA_H-paniculata_contig14850.2888.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE) HSP 1 Score: 201 bits (512), Expect = 5.360e-55 Identity = 123/319 (38.56%), Postives = 181/319 (56.74%), Query Frame = 1 Query: 28 SPAPATASIRMLLATAGAKDGELRHFDAKQAFLKADVDEEVYIEIPERFQHFPGAMGKLNKAIYGLVQPGRCWNITFCD-MTAIGSEQSRADPSIFRKVVDRGVEIVVIVHVDDILARAKDCETMEWFAIELGGRFKLKDLGDAEFYMDCHATRNRKARELKLGQDMYVKSKAEKFDVEKTSRIPAMSGAPALSKEDEPKTPEEK*EMKKSPYREAAGALMWTATMTRPDIACAVRSVTRFYNYPGSAHKKAVIKIVQYLLHTIE*GIIYGGQGCGLSMEAYANSDFRDCFDIRRSVSGGVVTLAKGAISWHSRDYSIL 981 SP P++ASI+++LA A K L H+D KQA+ A +DEEV++++P + K +AIYGL Q GR W D + G EQ +ADP +FRK+VD V ++++++VDDIL D E E L +F K+LG+ +++ C R+ A L++ Q Y+ S E+FDV+ TSRIPA GA K ++ K E P REA G++MW +T +RPD++ AVR+V R + P H A+ KI+ YL T + GI Y +G GL + Y ++ + D D RRSVS T+ +S S+ SI+ Sbjct: 414 SPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSD-EDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGE-------WPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDARYADTED-RRSVSRLATTVGGTVVSHGSKARSIV 722
BLAST of mRNA_H-paniculata_contig14850.2888.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 194 bits (492), Expect = 8.480e-55 Identity = 122/319 (38.24%), Postives = 181/319 (56.74%), Query Frame = 1 Query: 19 EKCSPAPATASIRMLLATAGAKDGELRHFDAKQAFLKADVDEEVYIEIPERFQHFPGAMGKLNKAIYGLVQPGRCWN--ITFCDMTAIGSEQSRADPSIFRKVVDRGVEIVVIVHVDDILARAKDCETMEWFAIELGGRFKLKDLGDAEFYMDCHATRNRKARELKLGQDMYVKSKAEKFDVEKTSRIPAMSGAPALSKEDEPKTPEEK*EMKKSPYREAAGALMWTATMTRPDIACAVRSVTRFYNYPGSAHKKAVIKIVQYLLHTIE*GIIYG-GQGCGLSMEAYANSDFRDCFDIRRSVSGGVVTLAKGAISWHSR 966 E +P A +S+R+L A A ++ LRHFD KQAF+++D+DE+V++ +PE G + KLNK++YGL Q R W+ + C + +G Q AD +FR + + V + ++VHVDDI + ++ E + F +L +K+LGD +Y C R+ A LK+ Q Y + +F VE IP G LS+ D+ + E+ P+RE G+LMW AT TRPDIA AVR+V R+ P H +A + I+ Y++ T + GI + G GLSME + ++D+ RRSVSGG+V G ISW SR Sbjct: 10 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARC-LICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEE-ERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQDE------EVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSR 319
BLAST of mRNA_H-paniculata_contig14850.2888.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE) HSP 1 Score: 193 bits (490), Expect = 1.760e-53 Identity = 123/326 (37.73%), Postives = 173/326 (53.07%), Query Frame = 1 Query: 7 VHYTEKCSPAPATASIRMLLATAGAKDGELRHFDAKQAFLKADVDEEVYIEIPERFQHFPGAMGKLNKAIYGLVQPGRCWNITFCD-MTAIGSEQSRADPSIFRKVVDRGVEIVVIVHVDDILARAKDCETMEWFAIELGGRFKLKDLGDAEFYMDCHATRNRKARELKLGQDMYVKSKAEKFDVEKTSRIPAMSGAPALSKEDEPKTPEEK*EMKKSPYREAAGALMWTATMTRPDIACAVRSVTRFYNYPGSAHKKAVIKIVQYLLHTIE*GIIYGGQGCGLSMEAYANSDFRDCFDIRRSVSGGVVTLAKGAISWHSRDYSIL 981 V Y SP P++ASI+++LA A K +L H+D KQAF A +DE+V++ +P + K +AIYGL Q GR W D + G EQ +ADP +FRK+ D V D IL D + E A L F KDLG+ ++ C R+ +A L++ Q Y+ S +FDV+ TS IPA G K D+ E P REA G++MW +T +RPDI+ AVR+V R + P H KA++KI+ YL T + GI Y +G GL + Y ++ + D D RRSVSG T+ IS S+ +I+ Sbjct: 79 VDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLA-SLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGE-------WPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYE-RGSGLGLAVYVDASYADAED-RRSVSGLATTVGGTVISHGSKTQAIV 394
BLAST of mRNA_H-paniculata_contig14850.2888.1 vs. uniprot
Match: A0A2K3MAN7_TRIPR (Retrotransposon protein putative Ty1-copia subclass (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MAN7_TRIPR) HSP 1 Score: 192 bits (487), Expect = 2.210e-53 Identity = 122/326 (37.42%), Postives = 183/326 (56.13%), Query Frame = 1 Query: 1 EGVHYTEKCSPAPATASIRMLLATAGAKDGELRHFDAKQAFLKADVDEEVYIEIPERFQHFP--GAMGKLNKAIYGLVQPGRCWNITFCD-MTAIGSEQSRADPSIFRKVVDRGVEIVVIVHVDDILARAKDCETMEWFAIELGGRFKLKDLGDAEFYMDCHATRNRKARELKLGQDMYVKSKAEKFDVEKTSR--IPAMSGAPALSKEDEPKTPEEK*EMKKSPYREAAGALMWTATMTRPDIACAVRSVTRFYNYPGSAHKKAVIKIVQYLLHTIE*GIIYGGQGCGLSMEAYANSDFRDCFDIRRSVSGGVVTLAKGAISWHS 963 EG+ Y E SP SIR+LLA A D E+ D K AFL ++ EEVY+ PE F + KL ++IYGL Q R WNI F + + + +P +++K+ + I ++++VDDIL D +M+ + L +F +KDLG+A + + R+R R L L Q MY+ + +++++EK+ R +P G +LS+E+ PKT EE+ M + PY A GA+M+T T TRPD+A A+ +R+ PG H K V I++YL T + +IYG LS++ Y ++ F D +S+SG V TL GAISW S Sbjct: 169 EGIDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGELKEEVYMTQPEGFTSLSDHNKVCKLQRSIYGLKQASRSWNIRFNNTIEKFNFVKCEEEPCVYKKISGSSI-IFLVLYVDDILLFGNDIPSMQSTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMEKSKRGYLPVGMGV-SLSRENCPKTLEERERMSRVPYASAVGAIMYTMTCTRPDVAYALGVTSRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGNSE--LSLKGYTDASFASDKDDSKSISGYVFTLNGGAISWKS 490
BLAST of mRNA_H-paniculata_contig14850.2888.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 194 bits (492), Expect = 2.510e-53 Identity = 122/319 (38.24%), Postives = 181/319 (56.74%), Query Frame = 1 Query: 19 EKCSPAPATASIRMLLATAGAKDGELRHFDAKQAFLKADVDEEVYIEIPERFQHFPGAMGKLNKAIYGLVQPGRCWN--ITFCDMTAIGSEQSRADPSIFRKVVDRGVEIVVIVHVDDILARAKDCETMEWFAIELGGRFKLKDLGDAEFYMDCHATRNRKARELKLGQDMYVKSKAEKFDVEKTSRIPAMSGAPALSKEDEPKTPEEK*EMKKSPYREAAGALMWTATMTRPDIACAVRSVTRFYNYPGSAHKKAVIKIVQYLLHTIE*GIIYG-GQGCGLSMEAYANSDFRDCFDIRRSVSGGVVTLAKGAISWHSR 966 E +P A +S+R+L A A ++ LRHFD KQAF+++D+DE+V++ +PE G + KLNK++YGL Q R W+ + C + +G Q AD +FR + + V + ++VHVDDI + ++ E + F +L +K+LGD +Y C R+ A LK+ Q Y + +F VE IP G LS+ D+ + E+ P+RE G+LMW AT TRPDIA AVR+V R+ P H +A + I+ Y++ T + GI + G GLSME + ++D+ RRSVSGG+V G ISW SR Sbjct: 184 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARC-LICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEE-ERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFDQDE------EVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSR 493 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14850.2888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14850.2888.1 >prot_H-paniculata_contig14850.2888.1 ID=prot_H-paniculata_contig14850.2888.1|Name=mRNA_H-paniculata_contig14850.2888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=195bp MLLATAGAKDGELRHFDAKQAFLKADVDEEVYIEIPERFQHFPGAMGKLNback to top mRNA from alignment at H-paniculata_contig14850:5481..6461+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig14850.2888.1 ID=mRNA_H-paniculata_contig14850.2888.1|Name=mRNA_H-paniculata_contig14850.2888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=981bp|location=Sequence derived from alignment at H-paniculata_contig14850:5481..6461+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig14850:5481..6461+ >mRNA_H-paniculata_contig14850.2888.1 ID=mRNA_H-paniculata_contig14850.2888.1|Name=mRNA_H-paniculata_contig14850.2888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1170bp|location=Sequence derived from alignment at H-paniculata_contig14850:5481..6461+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |