mRNA_H-paniculata_contig14827.2872.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig14827.2872.1 vs. uniprot
Match: D8LNG9_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG9_ECTSI) HSP 1 Score: 342 bits (876), Expect = 8.510e-113 Identity = 188/262 (71.76%), Postives = 211/262 (80.53%), Query Frame = 1 Query: 1 RLYHEPVSLPCGHTYCRGCLKRALASKPQQCPMCRAACRTAAGESGTNLAMVNIIKSQFGKEYDARGKEAEKDAVVEAEARRRAFALGESVTPAPDGSVSMPVCLLDVLLFPHQPVTLYLFEPRYITLVNRCLSDTRRFAVFPDRSPAAGAAGSILEISDARMVGEGQYLVMCRGVGRCTSVAEFEIEEGTRGLRYARVAPFEDEEXXXXXXXXXXXDTAAAGDRASAHEDGAGARTGRVRTADDVLGPELRELADSTSTVI 786 RLYHEPVSLPCGHTYCRGCLKRALA+K Q CPMCRAAC AG+ GTNLAMV+IIKSQFG++Y+ R EAE DA+VEAE RRRA +GESVTPAPDGSV MPVCLLD+LLFP QPVTLYLFEPRYIT+VNRCLS TRRFAVF D+SP+ G +G+ILEISDARM+ GQYL+MCRGVGRC S AEFE+E GT GLR+ARV+PFED+ XXXXXXXXXXX R TAD+VLGPELR+LAD TS V+ Sbjct: 65 RLYHEPVSLPCGHTYCRGCLKRALANKTQ-CPMCRAACHLGAGDCGTNLAMVSIIKSQFGRQYEERENEAEHDAMVEAETRRRAHTIGESVTPAPDGSVLMPVCLLDMLLFPLQPVTLYLFEPRYITMVNRCLSSTRRFAVFQDQSPSTGLSGAILEISDARMMNRGQYLIMCRGVGRCNSSAEFEVEAGTGGLRHARVSPFEDDXXXXXXXXXXXXXXXXXXRRV---------------TADEVLGPELRDLADRTSVVV 310
BLAST of mRNA_H-paniculata_contig14827.2872.1 vs. uniprot
Match: A0A835YVY5_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVY5_9STRA) HSP 1 Score: 172 bits (437), Expect = 2.340e-48 Identity = 99/242 (40.91%), Postives = 134/242 (55.37%), Query Frame = 1 Query: 1 RLYHEPVSLPCGHTYCRGCLKRALASKPQQCPMCRAACRTAAGESGTNLAMVNIIKSQFGKEYDARGKEAEKDAVVEAEARRRAFALGESVTPAPDGSVSMPVCLLDV-LLFPHQPVTLYLFEPRYITLVNRCLSDTRRFAVFPDRSPAAGAAGSILEISDARMVGE-----------------------------------GQYLVMCRGVGRCTSVAEFEIEEGTRGLRYARVAPFEDEE 618 RL++EPVS+ CGH+YCRGCL+RAL K CP+CRA A ++ NLAMV+ I+ EY AR +EA DA EA A +RA LGE T PDGSV M V + L+FP QP+TL+++EP+Y+ +V RCLS RRF + R+ G+ G++++I DARM+G GQYL+ GVGRC V+ E GLR A + P +D++ Sbjct: 93 RLFYEPVSIACGHSYCRGCLRRALRFKAS-CPICRAPLHAGAADAAANLAMVSFIQRDCAAEYAARAREAAADAAEEAAAAKRALTLGEDATLLPDGSVQMEVFVDRYSLVFPGQPITLFVYEPQYVIMVTRCLSGGRRFVM--QRAAERGSVGTVVQIDDARMLGRLWMPETVSTRAASALRSAPPLQRSDPPSELRGRGGGQYLLQAHGVGRCVCVSALVAEAEAHGLRSASIVPLDDDD 331
BLAST of mRNA_H-paniculata_contig14827.2872.1 vs. uniprot
Match: A0A7S1G500_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G500_9STRA) HSP 1 Score: 119 bits (298), Expect = 3.890e-28 Identity = 77/200 (38.50%), Postives = 104/200 (52.00%), Query Frame = 1 Query: 13 EPVSLPCGHTYCRGCLKRALASKPQQCPMCRAACRTAAGESGTNLAMVNIIKSQFGKEYDARGKEAEKDAVVEAEARRRAFALGESVTPAPDGSVSMPVCLLDVLLFPHQPVTLYLFEPRYITLVNRCLSDTRRFAVFPDRSPAAGAAGSILEISDARMVGEGQYLVMCRGVGRCTSVAEFEIEEGTRGLRYARVAPFED 612 EPV+L CGHTYCR CL+ AL + CPMCRA AA E N+ + +I+ +F E AR E E + V EAEA R + E + L++P QPVT +FEPRY +V RC+ +RRF + ++ A G ++EI+ R V G + CR R + A +EEGT GL YA + ED Sbjct: 39 EPVTLGCGHTYCRRCLRNALRVN-RHCPMCRAPTYVAANEQPANVLLTRLIERKFPAELAARRAE-EAEEVREAEADRLPIFVQEGL-----------------LVYPTQPVTFNIFEPRYRIMVQRCMEGSRRFGL---QTTPASTVGVVVEINSVRQVSVGVLQIGCRARSRYRTRATAAVEEGTGGLLYADIELLED 216
BLAST of mRNA_H-paniculata_contig14827.2872.1 vs. uniprot
Match: A0A7S2XUD8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUD8_9STRA) HSP 1 Score: 119 bits (299), Expect = 1.450e-27 Identity = 80/223 (35.87%), Postives = 119/223 (53.36%), Query Frame = 1 Query: 1 RLYHEPVSLPCGHTYCRGCLKRALASKPQQCPMCRAACRTAAGESGTNLAMVNIIKSQFGKEYDARGKEAEK----DAVVEAEARR----RAFALGESVTPAPDGSV---SMPVCLLDVLLFPHQPVTLYLFEPRYITLVNRCLSDTRRFAVFPDRSPAA-GAAGSILEISDARMVG--EGQYLVMCRGVGRCT-----SVAEFEIEEGTRGLRYARVAPFED 612 +L +EPVSLPCGH++CR CL+RAL K ++CP+CRAAC A + N+A+ S+ K + AR +E E+ D +A+A R R+ A S +GS ++P+ L + L PHQP+ FEPRY+ +V R L+ R F + P S G G ++ + + + +Y+V + R T S+ E E GT GL YA V P++D Sbjct: 31 KLLYEPVSLPCGHSFCRRCLRRALTYK-KECPLCRAACLPGAASNAVNIALETFASSRLPKAWAARKQECEEEDDEDRQADAQAARVLSGRSQASPASAAVPEEGSGVSHTVPLFLFPLQLVPHQPMIFQFFEPRYVVMVERLLAGNRLFGLQPSASEDRDGPPGLLMMVEQCQQIPGPHTRYVVQTKVASRYTIQDPSSIVE---EPGTMGLHYATVQPYDD 249
BLAST of mRNA_H-paniculata_contig14827.2872.1 vs. uniprot
Match: A0A7S0CSC1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CSC1_9EUKA) HSP 1 Score: 107 bits (266), Expect = 1.350e-23 Identity = 62/203 (30.54%), Postives = 99/203 (48.77%), Query Frame = 1 Query: 13 EPVSLPCGHTYCRGCLKRALASKPQQCPMCRAACRTAAGESGTNLAMVNIIKSQFGKEYDARGKEAEKDAVVEAEARRRAFALGESVTPAPDGSVSMPVCLLDVLLFPHQPVTLYLFEPRYITLVNRCLSDTRRFAVFP---DRSPAAGAAGSILEISDARMVGEGQYLVMCRGVGRCTSVAEFEIEEGTRGLRYARVAPFED 612 EP+++PCGHT+CR CL A+ ++CP CRA C N+ + NI + F KEY R +E + A ++ F ++P+ + LFP + L+LFE RY ++NRC+S R+F P D AG G + + + + +G+ L+ V R + +EEGT+GL Y + +E+ Sbjct: 41 EPITIPCGHTFCRSCLYLAMQRTKKKCPNCRAVCHVDPSSHSVNVMLANIAQKCFPKEYKKRAEECK--------ALKQKF------------QTTLPIFFYNNCLFPGCLLHLHLFEQRYRHMINRCVSSNRQFLYLPNFSDYKATAGDVGLLAYVDECEFLSDGRALLKATLVKRVV-ITNSWVEEGTQGLHYCQYQAYEE 222
BLAST of mRNA_H-paniculata_contig14827.2872.1 vs. uniprot
Match: A0A6B2LCC5_9EUKA (RING-type domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LCC5_9EUKA) HSP 1 Score: 102 bits (255), Expect = 3.100e-22 Identity = 64/204 (31.37%), Postives = 101/204 (49.51%), Query Frame = 1 Query: 13 EPVSLPCGHTYCRGCLKRALASKPQQCPMCRAACRTAAGESGTNLAMVNIIKSQFGKEYDARGKEAEKDAVVEAEARRRAFALGESVTPAPDGSVSMPVCLLDVLLFPHQPVTLYLFEPRYITLVNRCLSDTRRFAVFPDRS---PAAGAAGSILEISDARMVGEGQYLVMCRGVGRCTSVAEFEIEEGTRGLRYARVAPFEDE 615 EP+S+PCGHT+CR CL A ++CP+CRA C A N+ + +I+K+ F K+Y R KE E+ ++P+ + LFP + L+LFE RY ++ R L R+F P+ + + G G + E+ + R + +G+ L+ R V R VA+ +E+GT L Y + F+DE Sbjct: 12 EPISVPCGHTFCRTCLVAAQQRAQKKCPVCRAVCVIDATAQKENVQLASILKTCFPKQYAERLKEVEETKKT--------------------WKQNLPIFFFNDTLFPGGVLKLHLFEERYKLMIKRVLEGNRKFVYLPNFTNYKASKGDVGVVAEVLECRFLHDGRALLQARIVERAV-VADSWVEDGTGNLAYCQYELFKDE 194
BLAST of mRNA_H-paniculata_contig14827.2872.1 vs. uniprot
Match: A0A6H5KHS7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHS7_9PHAE) HSP 1 Score: 103 bits (258), Expect = 4.710e-22 Identity = 70/218 (32.11%), Postives = 106/218 (48.62%), Query Frame = 1 Query: 1 RLYHEPVSLPCGHTYCRGCLKRALASKPQQCPMCRAACRT--AAGESGTNLAMVNIIKSQFGKEYDARGKEAEKDAVVEAEARRRAFALGESVTPAPDGSVSMPVCLLDVLLFPHQPVTLYLFEPRYITLVNRCLSDTRRFA-VFPDRSPAA----------GAAGSILEISDARMVGEGQYLVMCRGVGRCTSVAEFEIEEGTRGLRYARVAPFEDE 615 +L EPVSLPCGHT+CR CL + L KP++CP C A C T A + N+ + I KS F + + R + E EA + F L +P V +FP Q + ++ FEPRY ++ R ++ +RRFA V P P+ G + +A + + + +V + GR T V +F +E GT L Y ++ PF+D+ Sbjct: 34 QLLAEPVSLPCGHTFCRVCLVKELRRKPKECPSCHATCHTRQVAEDQPQNVMLAQIAKSLFPELLERR--------LRETEAEKAKFEL------------CLPAFFYSVPVFPGQTLCVHFFEPRYKLMMQRIINTSRRFAYVLPAPVPSTNDDDRNTDQQGRIALEAHVCEAEFLSDDRVMVKIKLAGRHTVVEDF-VEAGTGNLHYCQLEPFDDD 230
BLAST of mRNA_H-paniculata_contig14827.2872.1 vs. uniprot
Match: A0A6U2J5U5_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2J5U5_HEMAN) HSP 1 Score: 102 bits (253), Expect = 6.320e-22 Identity = 64/202 (31.68%), Postives = 102/202 (50.50%), Query Frame = 1 Query: 1 RLYHEPVSLPCGHTYCRGCLKRALASKPQQCPMCRAACRTAAGESGTNLAMVNIIKSQFGKEYDARGKEAEKDAVVEAEARRRAFALGESVTPAPDGSVSMPVCLLDVLLFPHQPVTLYLFEPRYITLVNRCLSDTRRFAVFP--DRSPA-AGAAGSILEISDARMVGEGQYLVMCRGVGRCTSVAEFEIEEGTRGLRYARV 597 +L EPV+ PCGH++CR CL L ++CP CRA C+ +A+ ++ K+ F K Y R ++E +A + ++ +P+ + LFP P+ L LFEPRY +++R + +RRFA P D A G G I EI+D + +G+ + + R T + E IE+GT+GL + +V Sbjct: 21 QLLCEPVTTPCGHSFCRPCLVGTLRKNKKKCPSCRAICQIEPETHSETIALSSVAKAVFPKAYQQR--------ILEVQAEKASW------------DTILPIFFYNDTLFPFSPLALNLFEPRYKVMLHRIVESSRRFAYLPKFDTYQANVGDMGVIAEITDIEFLADGRAHLQAKCRDRFT-IKEAWIEDGTQGLHWCKV 201
BLAST of mRNA_H-paniculata_contig14827.2872.1 vs. uniprot
Match: A0A6V3MPG8_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6V3MPG8_9EUKA) HSP 1 Score: 100 bits (249), Expect = 4.080e-21 Identity = 60/205 (29.27%), Postives = 101/205 (49.27%), Query Frame = 1 Query: 13 EPVSLPCGHTYCRGCLKRALASKPQQCPMCRAACRTAAGESGTNLAMVNIIKSQFGKEYDARGKEAEKDAVVEAEARRRAFALGESVTPAPDGSVSMPVCLLDVLLFPHQPVTLYLFEPRYITLVNRCLSDTRRFAVFP---DRSPAAGAAGSILEISDARMVGEGQYLVMCRGVGRCTSVAEFEIEEGTRGLRYARVAPFEDEE 618 +P+++PCGHT+CR CL A+ ++CP CRA C N+ + I + F K+Y+ R ++E++ + F ES +P + + LFP + L+LFE RY ++NRC+S R+F P D G G + I + + +G+ L+ + + V +EEGT+GL Y + P+ +E+ Sbjct: 44 QPITVPCGHTFCRVCLYMAMQRSKKKCPNCRAVCHVEPASHAVNVMLAQIAQKCFPKQYEQR--------LLESKQEQEKF---ESTSP---------IFFYNNCLFPGCLLHLHLFEQRYRHMINRCVSSNRKFIYLPNFTDYKAKTGDVGLLAYIDECEFLPDGRALLKAT-IQKRVKVTNTWVEEGTQGLHYCQFHPYVEED 227
BLAST of mRNA_H-paniculata_contig14827.2872.1 vs. uniprot
Match: A0A482RY16_9ARCH (RING-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RY16_9ARCH) HSP 1 Score: 98.2 bits (243), Expect = 1.340e-20 Identity = 59/204 (28.92%), Postives = 102/204 (50.00%), Query Frame = 1 Query: 13 EPVSLPCGHTYCRGCLKRALASKPQQCPMCRAACRTAAGESGTNLAMVNIIKSQFGKEYDARGKEAEKDAVVEAEARRRAFALGESVTPAPDGSVSMPVCLLDVLLFPHQPVTLYLFEPRYITLVNRCLSDTRRFAVFPDRS---PAAGAAGSILEISDARMVGEGQYLVMCRGVGRCTSVAEFEIEEGTRGLRYARVAPFEDE 615 EP+S+ CGHT+CR CL +AL +QCP CR C +A + N+ + + + + Y +R ++EAE + ++ + P+ + +LFP ++L LFEPRY ++ R + TR FA P+ + G ++E+ + + +G+ L+ V R +AE +E+GT+GL Y R+ D+ Sbjct: 48 EPISISCGHTFCRVCLVKALRRHKKQCPTCREVCHVSAENAAENIMVKTLAMALDPETYRSR--------LLEAEGEKSSW------------TALYPIFYYNSILFPGNKLSLVLFEPRYKLMMRRIIDTTRSFAYVPNFTNYHARVGDVALVVELKEVEFLADGRCLLEGLLVSR-QRIAEHYVEQGTQGLHYCRLESLRDD 230 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14827.2872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14827.2872.1 >prot_H-paniculata_contig14827.2872.1 ID=prot_H-paniculata_contig14827.2872.1|Name=mRNA_H-paniculata_contig14827.2872.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=265bp RLYHEPVSLPCGHTYCRGCLKRALASKPQQCPMCRAACRTAAGESGTNLAback to top mRNA from alignment at H-paniculata_contig14827:205..4206- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig14827.2872.1 ID=mRNA_H-paniculata_contig14827.2872.1|Name=mRNA_H-paniculata_contig14827.2872.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4002bp|location=Sequence derived from alignment at H-paniculata_contig14827:205..4206- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig14827:205..4206- >mRNA_H-paniculata_contig14827.2872.1 ID=mRNA_H-paniculata_contig14827.2872.1|Name=mRNA_H-paniculata_contig14827.2872.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1590bp|location=Sequence derived from alignment at H-paniculata_contig14827:205..4206- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |