mRNA_H-paniculata_contig14827.2872.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14827.2872.1
Unique NamemRNA_H-paniculata_contig14827.2872.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14827.2872.1 vs. uniprot
Match: D8LNG9_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG9_ECTSI)

HSP 1 Score: 342 bits (876), Expect = 8.510e-113
Identity = 188/262 (71.76%), Postives = 211/262 (80.53%), Query Frame = 1
Query:    1 RLYHEPVSLPCGHTYCRGCLKRALASKPQQCPMCRAACRTAAGESGTNLAMVNIIKSQFGKEYDARGKEAEKDAVVEAEARRRAFALGESVTPAPDGSVSMPVCLLDVLLFPHQPVTLYLFEPRYITLVNRCLSDTRRFAVFPDRSPAAGAAGSILEISDARMVGEGQYLVMCRGVGRCTSVAEFEIEEGTRGLRYARVAPFEDEEXXXXXXXXXXXDTAAAGDRASAHEDGAGARTGRVRTADDVLGPELRELADSTSTVI 786
            RLYHEPVSLPCGHTYCRGCLKRALA+K Q CPMCRAAC   AG+ GTNLAMV+IIKSQFG++Y+ R  EAE DA+VEAE RRRA  +GESVTPAPDGSV MPVCLLD+LLFP QPVTLYLFEPRYIT+VNRCLS TRRFAVF D+SP+ G +G+ILEISDARM+  GQYL+MCRGVGRC S AEFE+E GT GLR+ARV+PFED+ XXXXXXXXXXX       R                TAD+VLGPELR+LAD TS V+
Sbjct:   65 RLYHEPVSLPCGHTYCRGCLKRALANKTQ-CPMCRAACHLGAGDCGTNLAMVSIIKSQFGRQYEERENEAEHDAMVEAETRRRAHTIGESVTPAPDGSVLMPVCLLDMLLFPLQPVTLYLFEPRYITMVNRCLSSTRRFAVFQDQSPSTGLSGAILEISDARMMNRGQYLIMCRGVGRCNSSAEFEVEAGTGGLRHARVSPFEDDXXXXXXXXXXXXXXXXXXRRV---------------TADEVLGPELRDLADRTSVVV 310          
BLAST of mRNA_H-paniculata_contig14827.2872.1 vs. uniprot
Match: A0A835YVY5_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVY5_9STRA)

HSP 1 Score: 172 bits (437), Expect = 2.340e-48
Identity = 99/242 (40.91%), Postives = 134/242 (55.37%), Query Frame = 1
Query:    1 RLYHEPVSLPCGHTYCRGCLKRALASKPQQCPMCRAACRTAAGESGTNLAMVNIIKSQFGKEYDARGKEAEKDAVVEAEARRRAFALGESVTPAPDGSVSMPVCLLDV-LLFPHQPVTLYLFEPRYITLVNRCLSDTRRFAVFPDRSPAAGAAGSILEISDARMVGE-----------------------------------GQYLVMCRGVGRCTSVAEFEIEEGTRGLRYARVAPFEDEE 618
            RL++EPVS+ CGH+YCRGCL+RAL  K   CP+CRA     A ++  NLAMV+ I+     EY AR +EA  DA  EA A +RA  LGE  T  PDGSV M V +    L+FP QP+TL+++EP+Y+ +V RCLS  RRF +   R+   G+ G++++I DARM+G                                    GQYL+   GVGRC  V+    E    GLR A + P +D++
Sbjct:   93 RLFYEPVSIACGHSYCRGCLRRALRFKAS-CPICRAPLHAGAADAAANLAMVSFIQRDCAAEYAARAREAAADAAEEAAAAKRALTLGEDATLLPDGSVQMEVFVDRYSLVFPGQPITLFVYEPQYVIMVTRCLSGGRRFVM--QRAAERGSVGTVVQIDDARMLGRLWMPETVSTRAASALRSAPPLQRSDPPSELRGRGGGQYLLQAHGVGRCVCVSALVAEAEAHGLRSASIVPLDDDD 331          
BLAST of mRNA_H-paniculata_contig14827.2872.1 vs. uniprot
Match: A0A7S1G500_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G500_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.890e-28
Identity = 77/200 (38.50%), Postives = 104/200 (52.00%), Query Frame = 1
Query:   13 EPVSLPCGHTYCRGCLKRALASKPQQCPMCRAACRTAAGESGTNLAMVNIIKSQFGKEYDARGKEAEKDAVVEAEARRRAFALGESVTPAPDGSVSMPVCLLDVLLFPHQPVTLYLFEPRYITLVNRCLSDTRRFAVFPDRSPAAGAAGSILEISDARMVGEGQYLVMCRGVGRCTSVAEFEIEEGTRGLRYARVAPFED 612
            EPV+L CGHTYCR CL+ AL    + CPMCRA    AA E   N+ +  +I+ +F  E  AR  E E + V EAEA R    + E +                 L++P QPVT  +FEPRY  +V RC+  +RRF +   ++  A   G ++EI+  R V  G   + CR   R  + A   +EEGT GL YA +   ED
Sbjct:   39 EPVTLGCGHTYCRRCLRNALRVN-RHCPMCRAPTYVAANEQPANVLLTRLIERKFPAELAARRAE-EAEEVREAEADRLPIFVQEGL-----------------LVYPTQPVTFNIFEPRYRIMVQRCMEGSRRFGL---QTTPASTVGVVVEINSVRQVSVGVLQIGCRARSRYRTRATAAVEEGTGGLLYADIELLED 216          
BLAST of mRNA_H-paniculata_contig14827.2872.1 vs. uniprot
Match: A0A7S2XUD8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUD8_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.450e-27
Identity = 80/223 (35.87%), Postives = 119/223 (53.36%), Query Frame = 1
Query:    1 RLYHEPVSLPCGHTYCRGCLKRALASKPQQCPMCRAACRTAAGESGTNLAMVNIIKSQFGKEYDARGKEAEK----DAVVEAEARR----RAFALGESVTPAPDGSV---SMPVCLLDVLLFPHQPVTLYLFEPRYITLVNRCLSDTRRFAVFPDRSPAA-GAAGSILEISDARMVG--EGQYLVMCRGVGRCT-----SVAEFEIEEGTRGLRYARVAPFED 612
            +L +EPVSLPCGH++CR CL+RAL  K ++CP+CRAAC   A  +  N+A+     S+  K + AR +E E+    D   +A+A R    R+ A   S     +GS    ++P+ L  + L PHQP+    FEPRY+ +V R L+  R F + P  S    G  G ++ +   + +     +Y+V  +   R T     S+ E   E GT GL YA V P++D
Sbjct:   31 KLLYEPVSLPCGHSFCRRCLRRALTYK-KECPLCRAACLPGAASNAVNIALETFASSRLPKAWAARKQECEEEDDEDRQADAQAARVLSGRSQASPASAAVPEEGSGVSHTVPLFLFPLQLVPHQPMIFQFFEPRYVVMVERLLAGNRLFGLQPSASEDRDGPPGLLMMVEQCQQIPGPHTRYVVQTKVASRYTIQDPSSIVE---EPGTMGLHYATVQPYDD 249          
BLAST of mRNA_H-paniculata_contig14827.2872.1 vs. uniprot
Match: A0A7S0CSC1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CSC1_9EUKA)

HSP 1 Score: 107 bits (266), Expect = 1.350e-23
Identity = 62/203 (30.54%), Postives = 99/203 (48.77%), Query Frame = 1
Query:   13 EPVSLPCGHTYCRGCLKRALASKPQQCPMCRAACRTAAGESGTNLAMVNIIKSQFGKEYDARGKEAEKDAVVEAEARRRAFALGESVTPAPDGSVSMPVCLLDVLLFPHQPVTLYLFEPRYITLVNRCLSDTRRFAVFP---DRSPAAGAAGSILEISDARMVGEGQYLVMCRGVGRCTSVAEFEIEEGTRGLRYARVAPFED 612
            EP+++PCGHT+CR CL  A+    ++CP CRA C         N+ + NI +  F KEY  R +E +        A ++ F              ++P+   +  LFP   + L+LFE RY  ++NRC+S  R+F   P   D    AG  G +  + +   + +G+ L+    V R   +    +EEGT+GL Y +   +E+
Sbjct:   41 EPITIPCGHTFCRSCLYLAMQRTKKKCPNCRAVCHVDPSSHSVNVMLANIAQKCFPKEYKKRAEECK--------ALKQKF------------QTTLPIFFYNNCLFPGCLLHLHLFEQRYRHMINRCVSSNRQFLYLPNFSDYKATAGDVGLLAYVDECEFLSDGRALLKATLVKRVV-ITNSWVEEGTQGLHYCQYQAYEE 222          
BLAST of mRNA_H-paniculata_contig14827.2872.1 vs. uniprot
Match: A0A6B2LCC5_9EUKA (RING-type domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LCC5_9EUKA)

HSP 1 Score: 102 bits (255), Expect = 3.100e-22
Identity = 64/204 (31.37%), Postives = 101/204 (49.51%), Query Frame = 1
Query:   13 EPVSLPCGHTYCRGCLKRALASKPQQCPMCRAACRTAAGESGTNLAMVNIIKSQFGKEYDARGKEAEKDAVVEAEARRRAFALGESVTPAPDGSVSMPVCLLDVLLFPHQPVTLYLFEPRYITLVNRCLSDTRRFAVFPDRS---PAAGAAGSILEISDARMVGEGQYLVMCRGVGRCTSVAEFEIEEGTRGLRYARVAPFEDE 615
            EP+S+PCGHT+CR CL  A     ++CP+CRA C   A     N+ + +I+K+ F K+Y  R KE E+                           ++P+   +  LFP   + L+LFE RY  ++ R L   R+F   P+ +    + G  G + E+ + R + +G+ L+  R V R   VA+  +E+GT  L Y +   F+DE
Sbjct:   12 EPISVPCGHTFCRTCLVAAQQRAQKKCPVCRAVCVIDATAQKENVQLASILKTCFPKQYAERLKEVEETKKT--------------------WKQNLPIFFFNDTLFPGGVLKLHLFEERYKLMIKRVLEGNRKFVYLPNFTNYKASKGDVGVVAEVLECRFLHDGRALLQARIVERAV-VADSWVEDGTGNLAYCQYELFKDE 194          
BLAST of mRNA_H-paniculata_contig14827.2872.1 vs. uniprot
Match: A0A6H5KHS7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHS7_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 4.710e-22
Identity = 70/218 (32.11%), Postives = 106/218 (48.62%), Query Frame = 1
Query:    1 RLYHEPVSLPCGHTYCRGCLKRALASKPQQCPMCRAACRT--AAGESGTNLAMVNIIKSQFGKEYDARGKEAEKDAVVEAEARRRAFALGESVTPAPDGSVSMPVCLLDVLLFPHQPVTLYLFEPRYITLVNRCLSDTRRFA-VFPDRSPAA----------GAAGSILEISDARMVGEGQYLVMCRGVGRCTSVAEFEIEEGTRGLRYARVAPFEDE 615
            +L  EPVSLPCGHT+CR CL + L  KP++CP C A C T   A +   N+ +  I KS F +  + R        + E EA +  F L             +P     V +FP Q + ++ FEPRY  ++ R ++ +RRFA V P   P+           G       + +A  + + + +V  +  GR T V +F +E GT  L Y ++ PF+D+
Sbjct:   34 QLLAEPVSLPCGHTFCRVCLVKELRRKPKECPSCHATCHTRQVAEDQPQNVMLAQIAKSLFPELLERR--------LRETEAEKAKFEL------------CLPAFFYSVPVFPGQTLCVHFFEPRYKLMMQRIINTSRRFAYVLPAPVPSTNDDDRNTDQQGRIALEAHVCEAEFLSDDRVMVKIKLAGRHTVVEDF-VEAGTGNLHYCQLEPFDDD 230          
BLAST of mRNA_H-paniculata_contig14827.2872.1 vs. uniprot
Match: A0A6U2J5U5_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2J5U5_HEMAN)

HSP 1 Score: 102 bits (253), Expect = 6.320e-22
Identity = 64/202 (31.68%), Postives = 102/202 (50.50%), Query Frame = 1
Query:    1 RLYHEPVSLPCGHTYCRGCLKRALASKPQQCPMCRAACRTAAGESGTNLAMVNIIKSQFGKEYDARGKEAEKDAVVEAEARRRAFALGESVTPAPDGSVSMPVCLLDVLLFPHQPVTLYLFEPRYITLVNRCLSDTRRFAVFP--DRSPA-AGAAGSILEISDARMVGEGQYLVMCRGVGRCTSVAEFEIEEGTRGLRYARV 597
            +L  EPV+ PCGH++CR CL   L    ++CP CRA C+         +A+ ++ K+ F K Y  R        ++E +A + ++               +P+   +  LFP  P+ L LFEPRY  +++R +  +RRFA  P  D   A  G  G I EI+D   + +G+  +  +   R T + E  IE+GT+GL + +V
Sbjct:   21 QLLCEPVTTPCGHSFCRPCLVGTLRKNKKKCPSCRAICQIEPETHSETIALSSVAKAVFPKAYQQR--------ILEVQAEKASW------------DTILPIFFYNDTLFPFSPLALNLFEPRYKVMLHRIVESSRRFAYLPKFDTYQANVGDMGVIAEITDIEFLADGRAHLQAKCRDRFT-IKEAWIEDGTQGLHWCKV 201          
BLAST of mRNA_H-paniculata_contig14827.2872.1 vs. uniprot
Match: A0A6V3MPG8_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6V3MPG8_9EUKA)

HSP 1 Score: 100 bits (249), Expect = 4.080e-21
Identity = 60/205 (29.27%), Postives = 101/205 (49.27%), Query Frame = 1
Query:   13 EPVSLPCGHTYCRGCLKRALASKPQQCPMCRAACRTAAGESGTNLAMVNIIKSQFGKEYDARGKEAEKDAVVEAEARRRAFALGESVTPAPDGSVSMPVCLLDVLLFPHQPVTLYLFEPRYITLVNRCLSDTRRFAVFP---DRSPAAGAAGSILEISDARMVGEGQYLVMCRGVGRCTSVAEFEIEEGTRGLRYARVAPFEDEE 618
            +P+++PCGHT+CR CL  A+    ++CP CRA C         N+ +  I +  F K+Y+ R        ++E++  +  F   ES +P         +   +  LFP   + L+LFE RY  ++NRC+S  R+F   P   D     G  G +  I +   + +G+ L+    + +   V    +EEGT+GL Y +  P+ +E+
Sbjct:   44 QPITVPCGHTFCRVCLYMAMQRSKKKCPNCRAVCHVEPASHAVNVMLAQIAQKCFPKQYEQR--------LLESKQEQEKF---ESTSP---------IFFYNNCLFPGCLLHLHLFEQRYRHMINRCVSSNRKFIYLPNFTDYKAKTGDVGLLAYIDECEFLPDGRALLKAT-IQKRVKVTNTWVEEGTQGLHYCQFHPYVEED 227          
BLAST of mRNA_H-paniculata_contig14827.2872.1 vs. uniprot
Match: A0A482RY16_9ARCH (RING-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RY16_9ARCH)

HSP 1 Score: 98.2 bits (243), Expect = 1.340e-20
Identity = 59/204 (28.92%), Postives = 102/204 (50.00%), Query Frame = 1
Query:   13 EPVSLPCGHTYCRGCLKRALASKPQQCPMCRAACRTAAGESGTNLAMVNIIKSQFGKEYDARGKEAEKDAVVEAEARRRAFALGESVTPAPDGSVSMPVCLLDVLLFPHQPVTLYLFEPRYITLVNRCLSDTRRFAVFPDRS---PAAGAAGSILEISDARMVGEGQYLVMCRGVGRCTSVAEFEIEEGTRGLRYARVAPFEDE 615
            EP+S+ CGHT+CR CL +AL    +QCP CR  C  +A  +  N+ +  +  +   + Y +R        ++EAE  + ++            +   P+   + +LFP   ++L LFEPRY  ++ R +  TR FA  P+ +      G    ++E+ +   + +G+ L+    V R   +AE  +E+GT+GL Y R+    D+
Sbjct:   48 EPISISCGHTFCRVCLVKALRRHKKQCPTCREVCHVSAENAAENIMVKTLAMALDPETYRSR--------LLEAEGEKSSW------------TALYPIFYYNSILFPGNKLSLVLFEPRYKLMMRRIIDTTRSFAYVPNFTNYHARVGDVALVVELKEVEFLADGRCLLEGLLVSR-QRIAEHYVEQGTQGLHYCRLESLRDD 230          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14827.2872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNG9_ECTSI8.510e-11371.76RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A835YVY5_9STRA2.340e-4840.91RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A7S1G500_9STRA3.890e-2838.50Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S2XUD8_9STRA1.450e-2735.87Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0CSC1_9EUKA1.350e-2330.54Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A6B2LCC5_9EUKA3.100e-2231.37RING-type domain-containing protein n=1 Tax=Arcell... [more]
A0A6H5KHS7_9PHAE4.710e-2232.11RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6U2J5U5_HEMAN6.320e-2231.68Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A6V3MPG8_9EUKA4.080e-2129.27Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A482RY16_9ARCH1.340e-2028.92RING-type domain-containing protein n=1 Tax=archae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14827contigH-paniculata_contig14827:205..4206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score347.4
Seed ortholog evalue5.7e-93
Seed eggNOG ortholog2880.D8LNG9
Preferred nameBFAR
KEGG koko:K15684
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0002020,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0005887,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009966,GO:0009968,GO:0009987,GO:0010498,GO:0010646,GO:0010648,GO:0010941,GO:0012505,GO:0016020,GO:0016021,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0023051,GO:0023057,GO:0030163,GO:0030176,GO:0030674,GO:0031224,GO:0031226,GO:0031227,GO:0031984,GO:0032446,GO:0035821,GO:0036211,GO:0042175,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044003,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0051603,GO:0051701,GO:0051704,GO:0051817,GO:0051865,GO:0052008,GO:0052043,GO:0052111,GO:0052185,GO:0052188,GO:0052368,GO:0060090,GO:0060548,GO:0061630,GO:0061659,GO:0065007,GO:0070534,GO:0070647,GO:0070936,GO:0071704,GO:0071944,GO:0075342,GO:0080134,GO:0080135,GO:0089720,GO:0098827,GO:0140096,GO:1900101,GO:1900102,GO:1901564,GO:1901565,GO:1901575,GO:1903573,GO:1903894,GO:1903895,GO:1905897
EggNOG free text desc.histone H2A-K13 ubiquitination
EggNOG OGsCOG2802@1,KOG4159@2759
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-04_003910.1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons5
Model size795
Cds size795
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14827.2872.1prot_H-paniculata_contig14827.2872.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14827 205..4206 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929179.4620798-CDS-H-paniculata_contig14827:204..4661622929179.4620798-CDS-H-paniculata_contig14827:204..466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14827 205..466 -
1691480761.970513-CDS-H-paniculata_contig14827:204..4661691480761.970513-CDS-H-paniculata_contig14827:204..466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14827 205..466 -
1622929179.4946322-CDS-H-paniculata_contig14827:1052..12141622929179.4946322-CDS-H-paniculata_contig14827:1052..1214Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14827 1053..1214 -
1691480761.9822311-CDS-H-paniculata_contig14827:1052..12141691480761.9822311-CDS-H-paniculata_contig14827:1052..1214Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14827 1053..1214 -
1622929179.5153751-CDS-H-paniculata_contig14827:1891..20551622929179.5153751-CDS-H-paniculata_contig14827:1891..2055Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14827 1892..2055 -
1691480761.9914274-CDS-H-paniculata_contig14827:1891..20551691480761.9914274-CDS-H-paniculata_contig14827:1891..2055Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14827 1892..2055 -
1622929179.5312405-CDS-H-paniculata_contig14827:3513..36331622929179.5312405-CDS-H-paniculata_contig14827:3513..3633Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14827 3514..3633 -
1691480762.0006633-CDS-H-paniculata_contig14827:3513..36331691480762.0006633-CDS-H-paniculata_contig14827:3513..3633Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14827 3514..3633 -
1622929179.5425372-CDS-H-paniculata_contig14827:4119..42061622929179.5425372-CDS-H-paniculata_contig14827:4119..4206Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14827 4120..4206 -
1691480762.0102258-CDS-H-paniculata_contig14827:4119..42061691480762.0102258-CDS-H-paniculata_contig14827:4119..4206Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14827 4120..4206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14827.2872.1

>prot_H-paniculata_contig14827.2872.1 ID=prot_H-paniculata_contig14827.2872.1|Name=mRNA_H-paniculata_contig14827.2872.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=265bp
RLYHEPVSLPCGHTYCRGCLKRALASKPQQCPMCRAACRTAAGESGTNLA
MVNIIKSQFGKEYDARGKEAEKDAVVEAEARRRAFALGESVTPAPDGSVS
MPVCLLDVLLFPHQPVTLYLFEPRYITLVNRCLSDTRRFAVFPDRSPAAG
AAGSILEISDARMVGEGQYLVMCRGVGRCTSVAEFEIEEGTRGLRYARVA
PFEDEEEREVAAAAAAADTAAAGDRASAHEDGAGARTGRVRTADDVLGPE
LRELADSTSTVISA*
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mRNA from alignment at H-paniculata_contig14827:205..4206-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14827.2872.1 ID=mRNA_H-paniculata_contig14827.2872.1|Name=mRNA_H-paniculata_contig14827.2872.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4002bp|location=Sequence derived from alignment at H-paniculata_contig14827:205..4206- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCTGTACCATGAGCCGGTGTCATTGCCGTGCGGCCATACGTACTGTAG AGGATGCCTAAAGCGGGCGCTGGCGAGCAAACCTCAGGTATTGTTGGTGG CATGTGAGAGATCGTGAAAAGACTCCATTTTATTGCAGTTTAACAATCTG GAGCGTCCACTAATCTGAAAATGTACTAGTATCAAAGTAGCAATCAGTTA CTGTCTAATAGCATCAGAACTACAAGTTAATTAACCTGCAAGCACCGTCT AACGTTGTTTTTTTTACAGATTTTTTAGTGTGTACAAATAATGTATGAAA CAGGGATAATTCCCGATTTATTTTTCACTTGTTTCAAATACTAGGCATCT ACACGTACCACGCGTCCTGAGCATCCCACCTTTTTGATTCTTTGCTGATG CATGTGTAAGTATACGCAGCTTTGAGATAGTTACGATTCATGTACCCTCA CCCAACTCGCCCCCTCCCCCCTTCATCCATTCTGCGCCCACATGTCGGAC CCTGCTGTGTTTACGATGTATCGGTCGACCGGTCGATCACATTCGCCTGT TTGTTTTCCTTCGCGATCGTGAGCAGTGTCCTATGTGTCGCGCGGCGTGC CGTACAGCAGCGGGAGAGAGCGGTACGAACTTGGCCATGGTAAACATCAT CAAGAGCCAGTTTGGCAAGGAGTATGACGCTCGGGGGAAAGAGGTGAAAG AAATAGCAAATTACGCAAGACAAAGAGAGGCTGTTTGTGTGTGTATGTGT GTGTGTGTTTTTTTCCAAACGGCGAGAGGGTTTATTGTGCTATAGTAAAA GATGCTCCCGAGAGGAGGACACCACGAATGTAGAGGCCACATCGGTGTGA AGAACCAATGTTGAGTCCATATCTGTGCTGCATGTTATCATCTGTACTTG ACTGGGTATCGGAATAGCGGCGAGTCCACATCCTCGTGATCTTGTCGTGG GCGTTGAATGTCTTGTGTTTTGGGGGCCCTGGGGGTTAGTATTTTGATAG GGATTCTATGGAGAGAATCGCTGAAAGGGTCACGGAGGGGGGAGGCTTCA CCGATATTATTATTCTTGAGTCAACCTGCATGCCGCAAGCTAGTAGTAAT AAGGTCCGACGCTTTAAATTTAAAAAGTCATTGTGCCTGTGTTGAGGTTA TGCGGCAGATCTTCAATTTCCAGGTGTGTGTAAATTTTATCAGCAAAGTA AACAAAGTGAGATCATATAGGGCGTAAGAGACACACTCAAGTTGGGTGAA AAGTCAGCAGAAGCATCACCATTTCTTGGCACGTAAGGTCTTTCAGACCA CATTCCTATGTAAACGTTGTCATACTCGGTAGATCTATTTGCCTCGGTCG GTGGCGTTTCATCGTACTAGAGTGGGGTATGTTTGCGATGGTTTTTTACT GTCAAAATAGCTTTGCGATCGCTGTGCTTCCTTCCACATATATTTCACGA GGCAAGGGTGAAGACAAATGCACTTGCGTGCGATGTATATTACCTTGTAT ATGTATTTTTTACTGTGGGAACTACAGTAAGTATGCCATGTTATGAATTC GTTCATGTACCTCCCTGCTCTGGTGCGCAAGTGTTCCAAACAGCACTTCT TGGAAGTAGATCTCGTCATACTAATGCGCGACCCCCCCCGCTCCGGTGAC CATGCGTTCTCTCGGGTCCCAATGGTTTCCTCATCATCACCTACGCTAGA GTCAGTCGCCACTTTGGAGCTTACCGTTGCGCGCCCCAATACTGTCTCTT TTATCAAAGGGATAGGGAGTGCTCTATTTCGGTTTTGTACACGACAGGTG TCTTGATTTATCCACCTTAATCCCCTGGCAAAAAATACTGAGACCCTCCC CAAAAAGGGCGAGTTATTTATAACCCTATGTGCGTTCAAGGCGGCCACCG ATTCCACAGCAGCAAAATCAACACACTACCCATCCCGCCGCCAAGACTAG TTCACGAACACATCCACTACCCCAGAACAACGACAATAACTACATCATCA ACGCCCTTTTAACCATCTCGGCGTTTATTTTCGTCGCATCTTCACCTTTG GTCATCCCGAGCTGACCCGCCAACATCATATCTAACACCAACTCTAGCAC GTTGCACATCGTAACCCAACACTCGATAACGATGGATCATGGGAAATATA GGCCGAGAAAGACGCGGTCGTGGAGGCCGAGGCGCGCCGCCGCGCCTTCG CGCTCGGAGAGAGCGTCACACCCGCCCCGGATGGGTCGGTGTCCATGCCG GTGTGTCTTCTTGATGTGCTTCTGTTTCCTCACCAGCCGGTTACGCTCTA CCTCTTTGAGCCTCGGTGAGAGAGATAGAAAGGGGAACGAGGGAGGCACC GTTTTGTTTTGATCTTTTCCATGTATACTGGTGGTAGGGCCACGGCTCCA CCTATGCTATCCCATTTTTTGTCTTGACCCTGCGTATTGTCTCTCGCTGT GCTCCTCAATGACCGTAGGGCGTAGCAGTGTCCGTGAAACGTTTCTTACG CGCTTTTTACACAATGCGATTATAACTTCGAGTATGGAGTGGAAGAGTTC GAAAAACAGGACGATCTTATTTGCATTATTCGTTATTAGCAATAAGGATG TTCAGAGAGGGTGTACTGCTAATCGTCAAGGTCATGCCGCCTTTGCATCT GTCGTAGAATTTGCTTCCGCTGGATTCTGCTTTTGGTGATGGAATTTATT GACAAGCGAATTATCGAAACTATTAACTTAACCCAATTCAGTTTTCACCT GATGCGAAAAATAGGAGACTGTGTGCATACTCTAGTATACCAAAACGAGG CACTACGACCATCCTATACACGACACCAGAGCGTTGGCATTTCATTACGT TTTGGGGATGATCTCTGTATTTCATGTACCAAACAAAAGTCTAGAAACGC CTGCTTATCCCGGGCTCTACCTACGCCCCAGCCCCGCCCCCGTCCCCTTT TCACTCACATGTCTCCGCTGAACAACCGTGAATCGACTGAAGGTACATTA CGCTGGTGAACCGATGCCTGTCGGACACGCGACGTTTCGCGGTGTTCCCA GACCGTTCCCCGGCTGCCGGCGCCGCTGGCTCAATCCTCGAGATCAGTGA TGCTCGCATGGTTGGCGAGGGCCAATACCTCGTCATGTGTCGCGGGGTCG GAAGGTGAGAATTGGCTGCTCCCATATATATATATATATATTATCATATC GGGCGGTGGGTAGGGGGGCGGTGGGATCGTATTCATGCTTTGCATGTCGT CGTTATTAGACCATTGATGACTCGTCCTCGCGAGGACAGTACTTTGTGGG TGGTCTGATTTGGAGTACAAAGTCCGTGCATGAAGGGTTTTCAGTAAGAG TTTTAGCAATAGCTGTACTTCCCTACCCAAGTCATCCTCTATCGTGAATT ATGACCGACCACTATACTCCCGTGAAGTTACTGCAACCACTTGACTAATG ATACAAGTTAAAAGTCCGAACTGAAAAAACGGTCGTTTTACTTTTCGACA TATGGGCGGATAATCAGTTAGTATGTTCCTCCGTAGTACGGTGCTCCGGT ATCTTTGGGAAGATGTCGTCGAGACCAGTCACATACGATAGGCATGGTTT TTCGGTAGTACAGGATCCTTGCTTGTCAAAAACATCGAGCTTGGAAAAAA TACACCCTCTCCTAGTTTACCTCCCACCCAGCTCCTCACCTCCCTCTCTC TCCCTACACCCCTACACCTCCGCCTACCATTGCCTACCAGATGTACATCC GTAGCCGAATTTGAAATAGAGGAGGGCACGCGCGGGTTGCGCTACGCTAG GGTGGCGCCGTTCGAAGATGAAGAGGAGAGGGAAGTGGCGGCCGCTGCGG CGGCGGCCGACACGGCGGCAGCTGGGGATAGAGCTTCCGCTCATGAAGAT GGGGCGGGGGCTCGTACCGGCAGGGTGCGGACGGCAGACGATGTGCTAGG TCCGGAGTTAAGGGAATTGGCAGACTCTACCTCGACGGTCATTTCCGCGT AA
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Coding sequence (CDS) from alignment at H-paniculata_contig14827:205..4206-

>mRNA_H-paniculata_contig14827.2872.1 ID=mRNA_H-paniculata_contig14827.2872.1|Name=mRNA_H-paniculata_contig14827.2872.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1590bp|location=Sequence derived from alignment at H-paniculata_contig14827:205..4206- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCTGTACCATGAGCCGGTGTCATTGCCGTGCGGCCATACGTACTGTAG
AGGATGCCTAAAGCGGGCGCTGGCGAGCAAACCTCAGAGGCTGTACCATG
AGCCGGTGTCATTGCCGTGCGGCCATACGTACTGTAGAGGATGCCTAAAG
CGGGCGCTGGCGAGCAAACCTCAGCAGTGTCCTATGTGTCGCGCGGCGTG
CCGTACAGCAGCGGGAGAGAGCGGTACGAACTTGGCCATGGTAAACATCA
TCAAGAGCCAGTTTGGCAAGGAGTATGACGCTCGGGGGAAAGAGCAGTGT
CCTATGTGTCGCGCGGCGTGCCGTACAGCAGCGGGAGAGAGCGGTACGAA
CTTGGCCATGGTAAACATCATCAAGAGCCAGTTTGGCAAGGAGTATGACG
CTCGGGGGAAAGAGGCCGAGAAAGACGCGGTCGTGGAGGCCGAGGCGCGC
CGCCGCGCCTTCGCGCTCGGAGAGAGCGTCACACCCGCCCCGGATGGGTC
GGTGTCCATGCCGGTGTGTCTTCTTGATGTGCTTCTGTTTCCTCACCAGC
CGGTTACGCTCTACCTCTTTGAGCCTCGGCCGAGAAAGACGCGGTCGTGG
AGGCCGAGGCGCGCCGCCGCGCCTTCGCGCTCGGAGAGAGCGTCACACCC
GCCCCGGATGGGTCGGTGTCCATGCCGGTGTGTCTTCTTGATGTGCTTCT
GTTTCCTCACCAGCCGGTTACGCTCTACCTCTTTGAGCCTCGGTACATTA
CGCTGGTGAACCGATGCCTGTCGGACACGCGACGTTTCGCGGTGTTCCCA
GACCGTTCCCCGGCTGCCGGCGCCGCTGGCTCAATCCTCGAGATCAGTGA
TGCTCGCATGGTTGGCGAGGGCCAATACCTCGTCATGTGTCGCGGGGTCG
GAAGGTACATTACGCTGGTGAACCGATGCCTGTCGGACACGCGACGTTTC
GCGGTGTTCCCAGACCGTTCCCCGGCTGCCGGCGCCGCTGGCTCAATCCT
CGAGATCAGTGATGCTCGCATGGTTGGCGAGGGCCAATACCTCGTCATGT
GTCGCGGGGTCGGAAGATGTACATCCGTAGCCGAATTTGAAATAGAGGAG
GGCACGCGCGGGTTGCGCTACGCTAGGGTGGCGCCGTTCGAAGATGAAGA
GGAGAGGGAAGTGGCGGCCGCTGCGGCGGCGGCCGACACGGCGGCAGCTG
GGGATAGAGCTTCCGCTCATGAAGATGGGGCGGGGGCTCGTACCGGCAGG
GTGCGGACGGCAGACGATGTGCTAGGTCCGGAGTTAAGGGAATTGGCAGA
CTCTACCTCGACGGTCATTTCCGCGTAAATGTACATCCGTAGCCGAATTT
GAAATAGAGGAGGGCACGCGCGGGTTGCGCTACGCTAGGGTGGCGCCGTT
CGAAGATGAAGAGGAGAGGGAAGTGGCGGCCGCTGCGGCGGCGGCCGACA
CGGCGGCAGCTGGGGATAGAGCTTCCGCTCATGAAGATGGGGCGGGGGCT
CGTACCGGCAGGGTGCGGACGGCAGACGATGTGCTAGGTCCGGAGTTAAG
GGAATTGGCAGACTCTACCTCGACGGTCATTTCCGCGTAA
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