mRNA_H-paniculata_contig14782.2854.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14782.2854.1
Unique NamemRNA_H-paniculata_contig14782.2854.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14782.2854.1 vs. uniprot
Match: A0A6H5L7P6_9PHAE (Rhodanese domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7P6_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.060e-17
Identity = 42/69 (60.87%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:   43 KTTEFQCFLGRQREGRANEHVVLDLRPIADFQREHLVGATSIPAVELEARMLELPPPFGCPVSVVGSDE 249
            K +EFQ ++GR++ G  +  VVLDLRP ADF+REHL G+TSIP  ELE R+LELPPPF  PV++VGS +
Sbjct:  113 KPSEFQEYVGRRKSG--SRRVVLDLRPRADFRREHLEGSTSIPIDELEPRLLELPPPFAQPVNIVGSQQ 179
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BLAST of mRNA_H-paniculata_contig14782.2854.1 vs. uniprot
Match: D7FQG6_ECTSI (Tellurite resistance methyltransferase, TehB, core n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG6_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 2.070e-17
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:   49 TEFQCFLGRQREGRANEHVVLDLRPIADFQREHLVGATSIPAVELEARMLELPPPFGCPVSVVGSDE 249
            +EFQ F+GR++ G  +  VVLDLRP ADF+REHL G+TSIP  ELE R+LELPPPF  PV++VGS +
Sbjct:  116 SEFQEFVGRRKSG--SRRVVLDLRPRADFRREHLEGSTSIPVDELEPRLLELPPPFAQPVNIVGSQQ 180
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BLAST of mRNA_H-paniculata_contig14782.2854.1 vs. uniprot
Match: A0A7S2ZAJ0_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZAJ0_9RHOD)

HSP 1 Score: 48.9 bits (115), Expect = 3.900e-5
Identity = 22/48 (45.83%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:  106 VLDLRPIADFQREHLVGATSIPAVELEARMLELPPPFGCPVSVVGSDE 249
            ++D+R    F R HL  +TSIPA EL+ R+LE+PPP   P++++G  E
Sbjct:   73 IIDIRTKESFARGHLPCSTSIPADELQERLLEMPPPVEDPLTLLGESE 120
[Close]
BLAST of mRNA_H-paniculata_contig14782.2854.1 vs. uniprot
Match: A0A7S3E5W8_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E5W8_9RHOD)

HSP 1 Score: 48.9 bits (115), Expect = 8.430e-5
Identity = 22/48 (45.83%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:  106 VLDLRPIADFQREHLVGATSIPAVELEARMLELPPPFGCPVSVVGSDE 249
            ++D+R    F R HL  +TSIPA EL+ R+LE+PPP   P++++G  E
Sbjct:   73 IIDIRTKESFARGHLPCSTSIPADELQERLLEMPPPVEDPLTLLGESE 120
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14782.2854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L7P6_9PHAE2.060e-1760.87Rhodanese domain-containing protein n=1 Tax=Ectoca... [more]
D7FQG6_ECTSI2.070e-1762.69Tellurite resistance methyltransferase, TehB, core... [more]
A0A7S2ZAJ0_9RHOD3.900e-545.83Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7S3E5W8_9RHOD8.430e-545.83Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14782contigH-paniculata_contig14782:220..483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size264
Cds size264
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929176.9042404-CDS-H-paniculata_contig14782:219..4831622929176.9042404-CDS-H-paniculata_contig14782:219..483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14782 220..483 -
1691480761.088328-CDS-H-paniculata_contig14782:219..4831691480761.088328-CDS-H-paniculata_contig14782:219..483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14782 220..483 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14782.2854.1prot_H-paniculata_contig14782.2854.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14782 220..483 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14782.2854.1

>prot_H-paniculata_contig14782.2854.1 ID=prot_H-paniculata_contig14782.2854.1|Name=mRNA_H-paniculata_contig14782.2854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
SSGSLPPTPRKTRTKTTEFQCFLGRQREGRANEHVVLDLRPIADFQREHL
VGATSIPAVELEARMLELPPPFGCPVSVVGSDEVTIL*
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mRNA from alignment at H-paniculata_contig14782:220..483-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14782.2854.1 ID=mRNA_H-paniculata_contig14782.2854.1|Name=mRNA_H-paniculata_contig14782.2854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=264bp|location=Sequence derived from alignment at H-paniculata_contig14782:220..483- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTTCGGGGTCTTTGCCGCCCACCCCAAGAAAAACAAGAACAAAAACAAC
AGAGTTTCAGTGCTTCCTGGGGCGCCAACGAGAAGGACGCGCTAACGAAC
ACGTCGTGCTCGATTTGCGACCAATAGCAGACTTTCAGCGGGAGCATCTT
GTCGGGGCTACGTCAATACCCGCGGTCGAGCTGGAGGCCAGGATGCTCGA
GCTGCCGCCGCCTTTCGGTTGTCCAGTGAGCGTCGTAGGGAGCGACGAGG
TAACCATTTTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig14782:220..483-

>mRNA_H-paniculata_contig14782.2854.1 ID=mRNA_H-paniculata_contig14782.2854.1|Name=mRNA_H-paniculata_contig14782.2854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig14782:220..483- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTTCGGGGTCTTTGCCGCCCACCCCAAGAAAAACAAGAACAAAAACAAC
AGAGTTTCAGTGCTTCCTGGGGCGCCAACGAGAAGGACGCGCTAACGAAC
ACGTCGTGCTCGATTTGCGACCAATAGCAGACTTTCAGCGGGAGCATCTT
GTCGGGGCTACGTCAATACCCGCGGTCGAGCTGGAGGCCAGGATGCTCGA
GCTGCCGCCGCCTTTCGGTTGTCCAGTGAGCGTCGTAGGGAGCGACGAGG
TAACCATTTTGTAGTCTTCGGGGTCTTTGCCGCCCACCCCAAGAAAAACA
AGAACAAAAACAACAGAGTTTCAGTGCTTCCTGGGGCGCCAACGAGAAGG
ACGCGCTAACGAACACGTCGTGCTCGATTTGCGACCAATAGCAGACTTTC
AGCGGGAGCATCTTGTCGGGGCTACGTCAATACCCGCGGTCGAGCTGGAG
GCCAGGATGCTCGAGCTGCCGCCGCCTTTCGGTTGTCCAGTGAGCGTCGT
AGGGAGCGACGAGGTAACCATTTTGTAG
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