mRNA_H-paniculata_contig14780.2853.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14780.2853.1
Unique NamemRNA_H-paniculata_contig14780.2853.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14780.2853.1 vs. uniprot
Match: D7FYX8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYX8_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.700e-10
Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = 1
Query:    7 PYKGMWDAFGAIYRAGGVAGLFRGAGARMAFHAPNTAIAMATFEKAKE 150
            PY GM DA    YRAGG+AGLF+G+GARMAF AP+  I MA FEK+KE
Sbjct:  321 PYTGMLDALRRSYRAGGLAGLFKGSGARMAFQAPSIGITMAAFEKSKE 368          
BLAST of mRNA_H-paniculata_contig14780.2853.1 vs. uniprot
Match: A0A7S0GMZ5_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GMZ5_9EUKA)

HSP 1 Score: 50.4 bits (119), Expect = 1.960e-6
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 1
Query:   10 YKGMWDAFGAIYRAGGVAGLFRGAGARMAFHAPNTAIAMATFE 138
            Y+G +DA  +IY   G AGLFRGAGAR+ F AP+TAI++A F+
Sbjct:   84 YRGFFDALWSIYSIEGAAGLFRGAGARVLFQAPSTAISIACFD 126          
BLAST of mRNA_H-paniculata_contig14780.2853.1 vs. uniprot
Match: A0A812QZ45_9DINO (Slc25a37 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812QZ45_9DINO)

HSP 1 Score: 48.5 bits (114), Expect = 7.030e-6
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 1
Query:   16 GMWDAFGAIYRAGGVAGLFRGAGARMAFHAPNTAIAMATFEK 141
            G+ DA   ++R GGV  LFRGAGAR AFHAP+T I   TFE+
Sbjct:   59 GLRDAMLRLWREGGVRALFRGAGARAAFHAPSTCITFTTFEE 100          
BLAST of mRNA_H-paniculata_contig14780.2853.1 vs. uniprot
Match: A0A7S0GQL7_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GQL7_9EUKA)

HSP 1 Score: 50.4 bits (119), Expect = 7.090e-6
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 1
Query:   10 YKGMWDAFGAIYRAGGVAGLFRGAGARMAFHAPNTAIAMATFE 138
            Y+G +DA  +IY   G AGLFRGAGAR+ F AP+TAI++A F+
Sbjct:  244 YRGFFDALWSIYSIEGAAGLFRGAGARVLFQAPSTAISIACFD 286          
BLAST of mRNA_H-paniculata_contig14780.2853.1 vs. uniprot
Match: A0A1Z5KBQ9_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBQ9_FISSO)

HSP 1 Score: 50.1 bits (118), Expect = 9.940e-6
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 1
Query:   10 YKGMWDAFGAIYRAGGVAGLFRGAGARMAFHAPNTAIAMATFE 138
            Y G+WD +   YRAGG+AGL+RGAGAR+ +  P T I M ++E
Sbjct:  259 YNGVWDCWQKTYRAGGLAGLWRGAGARVLYTVPATTITMTSYE 301          
BLAST of mRNA_H-paniculata_contig14780.2853.1 vs. uniprot
Match: A0A7S4DYU2_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DYU2_9EUKA)

HSP 1 Score: 49.7 bits (117), Expect = 1.360e-5
Identity = 25/43 (58.14%), Postives = 30/43 (69.77%), Query Frame = 1
Query:   10 YKGMWDAFGAIYRAGGVAGLFRGAGARMAFHAPNTAIAMATFE 138
            Y+G W    +IY   G  GLFRGAGARM F AP+TAI++A FE
Sbjct:  259 YRGFWHGLTSIYATEGWFGLFRGAGARMLFQAPSTAISIACFE 301          
BLAST of mRNA_H-paniculata_contig14780.2853.1 vs. uniprot
Match: A0A7S3URD5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URD5_HETAK)

HSP 1 Score: 47.8 bits (112), Expect = 1.850e-5
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1
Query:   10 YKGMWDAFGAIYRAGGVAGLFRGAGARMAFHAPNTAIAMATFEKAK 147
            Y  M D    IYRA G+ GL+RGAGAR+AF APN A+ ++ F+  K
Sbjct:   72 YSSMLDGVAKIYRAEGLRGLYRGAGARVAFQAPNMALTVSLFDVCK 117          
BLAST of mRNA_H-paniculata_contig14780.2853.1 vs. uniprot
Match: A0A5D6XI60_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XI60_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.860e-5
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1
Query:   10 YKGMWDAFGAIYRAGGVAGLFRGAGARMAFHAPNTAIAMATFEKAK 147
            Y G++D    + R  GV  L++GAGAR+AFHAP+TAI MA FE  +
Sbjct:  255 YTGIFDGLSQVVRNEGVMALYKGAGARVAFHAPSTAITMALFESCR 300          
BLAST of mRNA_H-paniculata_contig14780.2853.1 vs. uniprot
Match: A0A3M6VP50_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VP50_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 2.530e-5
Identity = 23/47 (48.94%), Postives = 34/47 (72.34%), Query Frame = 1
Query:   10 YKGMWDAFGAIYRAGGVAGLFRGAGARMAFHAPNTAIAMATFEKAKE 150
            Y+G+ D    + R  GV  L++GAGAR+AFHAP+TAI M+ FE+ ++
Sbjct:  244 YRGIIDGLTQLIRTEGVLALYKGAGARVAFHAPSTAITMSLFERCRQ 290          
BLAST of mRNA_H-paniculata_contig14780.2853.1 vs. uniprot
Match: K3X835_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X835_GLOUD)

HSP 1 Score: 48.5 bits (114), Expect = 3.490e-5
Identity = 23/48 (47.92%), Postives = 33/48 (68.75%), Query Frame = 1
Query:    4 VPYKGMWDAFGAIYRAGGVAGLFRGAGARMAFHAPNTAIAMATFEKAK 147
            V Y G+++    + R  GV  L++GAGAR+AFHAP+TAI M+ FE  +
Sbjct:  250 VAYSGIFNGLSQVIRQEGVLALYKGAGARVAFHAPSTAITMSLFESCR 297          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14780.2853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FYX8_ECTSI1.700e-1066.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0GMZ5_9EUKA1.960e-658.14Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A812QZ45_9DINO7.030e-659.52Slc25a37 protein n=1 Tax=Symbiodinium necroappeten... [more]
A0A7S0GQL7_9EUKA7.090e-658.14Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A1Z5KBQ9_FISSO9.940e-653.49Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S4DYU2_9EUKA1.360e-558.14Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S3URD5_HETAK1.850e-552.17Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A5D6XI60_9STRA1.860e-552.17Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A3M6VP50_9STRA2.530e-548.94Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
K3X835_GLOUD3.490e-547.92Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14780contigH-paniculata_contig14780:6169..6318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size132
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929176.810842-CDS-H-paniculata_contig14780:6168..63001622929176.810842-CDS-H-paniculata_contig14780:6168..6300Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14780 6169..6300 -
1691480761.0713062-CDS-H-paniculata_contig14780:6168..63001691480761.0713062-CDS-H-paniculata_contig14780:6168..6300Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14780 6169..6300 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929176.8231711-UTR-H-paniculata_contig14780:6300..63181622929176.8231711-UTR-H-paniculata_contig14780:6300..6318Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14780 6301..6318 -
1691480761.0791428-UTR-H-paniculata_contig14780:6300..63181691480761.0791428-UTR-H-paniculata_contig14780:6300..6318Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14780 6301..6318 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14780.2853.1prot_H-paniculata_contig14780.2853.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14780 6169..6300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14780.2853.1

>prot_H-paniculata_contig14780.2853.1 ID=prot_H-paniculata_contig14780.2853.1|Name=mRNA_H-paniculata_contig14780.2853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp
MWDAFGAIYRAGGVAGLFRGAGARMAFHAPNTAIAMATFEKAKE
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mRNA from alignment at H-paniculata_contig14780:6169..6318-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14780.2853.1 ID=mRNA_H-paniculata_contig14780.2853.1|Name=mRNA_H-paniculata_contig14780.2853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at H-paniculata_contig14780:6169..6318- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGTGCCGTACAAGGGCATGTGGGACGCTTTCGGCGCGATCTACAGGGC GGGTGGAGTAGCGGGTCTGTTCAGGGGGGCCGGGGCGAGGATGGCATTTC ACGCGCCAAACACTGCCATCGCCATGGCTACTTTCGAGAAGGCCAAAGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig14780:6169..6318-

>mRNA_H-paniculata_contig14780.2853.1 ID=mRNA_H-paniculata_contig14780.2853.1|Name=mRNA_H-paniculata_contig14780.2853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at H-paniculata_contig14780:6169..6318- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGGACGCTTTCGGCGCGATCTACAGGGCGGGTGGAGTAGCGGGTCT
GTTCAGGGGGGCCGGGGCGAGGATGGCATTTCACGCGCCAAACACTGCCA
TCGCCATGGCTACTTTCGAGAAGGCCAAAGAAATGTGGGACGCTTTCGGC
GCGATCTACAGGGCGGGTGGAGTAGCGGGTCTGTTCAGGGGGGCCGGGGC
GAGGATGGCATTTCACGCGCCAAACACTGCCATCGCCATGGCTACTTTCG
AGAAGGCCAAAGAA
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