prot_H-paniculata_contig14738.2830.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig14738.2830.1
Unique Nameprot_H-paniculata_contig14738.2830.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length317
Homology
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BLAST of mRNA_H-paniculata_contig14738.2830.1 vs. uniprot
Match: D7G5E9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E9_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.480e-16
Identity = 61/129 (47.29%), Postives = 65/129 (50.39%), Query Frame = 0 
Query:   36 RRLQEGRCNSIGCPGGFIPITNAWEVECGDECTVDLCCDAFCWGHPXXXXXXXXXXXXXXXXXXXXXXXXXXVAHAGTGPNGENL-------AGPLCNSIGCNNGSIPITDAQFVECTGGVCTQEECCD 157
            RRLQEG CNSIGCPGGF PI NAWEVECG  C V  CC+       XXXXXXXXXXX                    T   GE          G  CNSIGC  G  PI +A  VEC    C   +CC+
Sbjct:   34 RRLQEGLCNSIGCPGGFTPIPNAWEVECGHSCDVATCCEXXXXXXXXXXXXXXXXXXGTTRCTDDYCTTPQCCVSGNT-RKGEQXXXXXXXAGGLYCNSIGCPGGYTPIPNAWEVECYDDSCEVSQCCE 161
[Close]
BLAST of mRNA_H-paniculata_contig14738.2830.1 vs. uniprot
Match: D8LCY4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY4_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 2.960e-12
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0 
Query:   36 RRLQEGRCNSIGCPGGFIPITNAWEVECGDECTVDLCCDAF 76
            RRLQEG CNSIGCPGG+ PI  AWEVECGD C V  CC+AF
Sbjct:   43 RRLQEGLCNSIGCPGGYTPIPYAWEVECGDSCDVATCCEAF 83
[Close]
BLAST of mRNA_H-paniculata_contig14738.2830.1 vs. uniprot
Match: A0A6H5JPS1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPS1_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 4.180e-8
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 0 
Query:   43 CNSIGCPGGFIPITNAWEVECGDE-CTVDLCCDA 75
            CNSIGCPGG+ PI NAWEVEC D+ C V  CC+A
Sbjct:    8 CNSIGCPGGYTPIPNAWEVECDDDPCEVSQCCEA 41
[Close]
BLAST of mRNA_H-paniculata_contig14738.2830.1 vs. uniprot
Match: A0A6H5KRN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRN6_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.010e-7
Identity = 25/34 (73.53%), Postives = 27/34 (79.41%), Query Frame = 0 
Query:   43 CNSIGCPGGFIPITNAWEVEC-GDECTVDLCCDA 75
            CNSIGCPGG+ PI NAWEVEC GD C V  CC+A
Sbjct:  115 CNSIGCPGGYTPIPNAWEVECSGDSCEVSQCCEA 148
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14738.2830.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G5E9_ECTSI1.480e-1647.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCY4_ECTSI2.960e-1275.61Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JPS1_9PHAE4.180e-870.59Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRN6_9PHAE2.010e-773.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..316
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.844

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14738contigH-paniculata_contig14738:1031..4709 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14738.2830.1mRNA_H-paniculata_contig14738.2830.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig14738 951..5854 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig14738.2830.1 ID=prot_H-paniculata_contig14738.2830.1|Name=mRNA_H-paniculata_contig14738.2830.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=317bp
MARAGVTVSAVAVLALCSGVFAAEEGVTLRGNSVDRRLQEGRCNSIGCPG
GFIPITNAWEVECGDECTVDLCCDAFCWGHPCPDGFIPNPDTVNDMCTDT
CTTDKCCVAHAGTGPNGENLAGPLCNSIGCNNGSIPITDAQFVECTGGVC
TQEECCDLFCWSHPCPDGFIPNPDTVNDMCTDTCSTDKCCVAHAGNAPNG
DNLAGPLCNSIGCNNGSIPIPNAQFVECSGGMCTQEECCDAFCSFHACPP
AFTPIPLANETMCADAGCTTGLCCEALCSGFACENGLIPIPEAYMVRCSN
DICTNDECCTMVNGNP*
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