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Homology
BLAST of mRNA_H-paniculata_contig14738.2830.1 vs. uniprot
Match: D7G5E9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E9_ECTSI) HSP 1 Score: 88.2 bits (217), Expect = 1.420e-15 Identity = 61/129 (47.29%), Postives = 65/129 (50.39%), Query Frame = 3
Query: 186 RRLQEGRCNSIGCPGGFIPITNAWEVECGDECTVDLCCDAFCWGHPXXXXXXXXXXXXXXXXXXXXXXXXXXVAHAGTGPNGENL-------AGPLCNSIGCNNGSIPITDAQFVECTGGVCTQEECCD 551
RRLQEG CNSIGCPGGF PI NAWEVECG C V CC+ XXXXXXXXXXX T GE G CNSIGC G PI +A VEC C +CC+
Sbjct: 34 RRLQEGLCNSIGCPGGFTPIPNAWEVECGHSCDVATCCEXXXXXXXXXXXXXXXXXXGTTRCTDDYCTTPQCCVSGNT-RKGEQXXXXXXXAGGLYCNSIGCPGGYTPIPNAWEVECYDDSCEVSQCCE 161
BLAST of mRNA_H-paniculata_contig14738.2830.1 vs. uniprot
Match: D8LCY4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY4_ECTSI) HSP 1 Score: 76.3 bits (186), Expect = 1.760e-11 Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 3
Query: 186 RRLQEGRCNSIGCPGGFIPITNAWEVECGDECTVDLCCDAF 308
RRLQEG CNSIGCPGG+ PI AWEVECGD C V CC+AF
Sbjct: 43 RRLQEGLCNSIGCPGGYTPIPYAWEVECGDSCDVATCCEAF 83
BLAST of mRNA_H-paniculata_contig14738.2830.1 vs. uniprot
Match: A0A6H5JPS1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPS1_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 1.140e-7 Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 3
Query: 207 CNSIGCPGGFIPITNAWEVECGDE-CTVDLCCDA 305
CNSIGCPGG+ PI NAWEVEC D+ C V CC+A
Sbjct: 8 CNSIGCPGGYTPIPNAWEVECDDDPCEVSQCCEA 41
BLAST of mRNA_H-paniculata_contig14738.2830.1 vs. uniprot
Match: A0A6H5KRN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRN6_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 8.000e-7 Identity = 25/34 (73.53%), Postives = 27/34 (79.41%), Query Frame = 3
Query: 207 CNSIGCPGGFIPITNAWEVEC-GDECTVDLCCDA 305
CNSIGCPGG+ PI NAWEVEC GD C V CC+A
Sbjct: 115 CNSIGCPGGYTPIPNAWEVECSGDSCEVSQCCEA 148
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | signal peptide |
Exons | 4 |
Model size | 2176 |
Cds size | 951 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14738.2830.1 >prot_H-paniculata_contig14738.2830.1 ID=prot_H-paniculata_contig14738.2830.1|Name=mRNA_H-paniculata_contig14738.2830.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=317bp
MARAGVTVSAVAVLALCSGVFAAEEGVTLRGNSVDRRLQEGRCNSIGCPG GFIPITNAWEVECGDECTVDLCCDAFCWGHPCPDGFIPNPDTVNDMCTDT CTTDKCCVAHAGTGPNGENLAGPLCNSIGCNNGSIPITDAQFVECTGGVC TQEECCDLFCWSHPCPDGFIPNPDTVNDMCTDTCSTDKCCVAHAGNAPNG DNLAGPLCNSIGCNNGSIPIPNAQFVECSGGMCTQEECCDAFCSFHACPP AFTPIPLANETMCADAGCTTGLCCEALCSGFACENGLIPIPEAYMVRCSN DICTNDECCTMVNGNP* back to topmRNA from alignment at H-paniculata_contig14738:951..5854+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig14738.2830.1 ID=mRNA_H-paniculata_contig14738.2830.1|Name=mRNA_H-paniculata_contig14738.2830.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4904bp|location=Sequence derived from alignment at H-paniculata_contig14738:951..5854+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CCACAGTGCTTCACGTCACTCTCAGCCGATTATTCCATTCCCTCACTACG
CGACTACGCAAGAGTACTGAAGGGATCATCATGGCACGAGCCGGAGTCAC
CGTAAGCGCCGTCGCCGTGCTAGCTCTTTGCTCCGGCGTGTTCGCTGCTG
AAGAAGGTGCGTGCGTTAGGATGGATATTTTGTCTTGTCCGCTCTTGCCT
ACTCTTCCTGTTCAGTTTTATCCTACAGGTAGATACATGGATGTCGGATG
CCTGTATTCGATAACAGCCGCAGATGGATGCCTGATGTCCAGCGCGGTAT
TCCAGCGAAACAGTGCCTTTACCGCGCTGGACATCGGGCAGTACTCGCAA
AAGTTCGCGGCCAGTCAATGTGCGGCCCGTGTTCGCCTTTGCGGCCTCTA
ACAATCCCGCTATCATGCAGTATTTTCGCAAATCTGGTAAAGCATGTGAA
GCTGGATTTTATCACGGTGTTGCTGCCCCGCGAAGTGATTATGGCCCTTG
TTCCCTTCAAGGTGGATCGTCGCAGTGACATTCCACGAGGCAAAACTTGC
CCAAGAACTTTAGGGTCATAAACCCATGTTGATCCTAGGCTAGAATAGAG
TACAATACAGACAATACACTCAGGATCCGAAGTGCTTCCAGCTTGTGGAA
CGATCTTGGCGATAGAAATTTGCACGTCACTGGTTTGTTTTGGCATATTC
CCACCATTCTGTTCACCTGACTCTCACTGCTTGGCTCTGGATGAACATGT
CTCACGTCAACTACATCGAGACAGCTCCCTGTGGCTTTGCTGGAAGTGGA
CAATTTACCTCCTATGTGCAGATAGAATTACAGACTGCCCTGACAGACTT
TATGTTGAGATCCGAGATATTATACATTTTGCTTTGGTACGGAAGAACAT
TTTGCCCTCGATGAGGTTTTGTGTCCTGGTAAGTGAGAGACTGAGTCTTT
TAGTACAACGTACATCAGGCGGCAGATATGAAATTTGATGAAAACTCCTC
ACTGGCTTACCCCTATTCCATTGTCTCGGGGCGCAGGTGTCACTCTGCGT
GGTAACTCAGTGGACAGGCGCCTGCAGGAGGTGCGTACATTTTGCGGTAT
ATGTGGGAATGAAGTTTTGTTTCGTTCTTTTCTCCCTTCGTTTTGGTGTT
GCAATTCGAAAATTGGTTGGTCAGCTCAAATCTAGGGAGCCAGCGTTACA
CCCTATGGGCGGCAGTAACATCCACTACGTTCGCAACTCCCTTCAGCTAA
CGGACAAGTTTGAATCACATGTGATTTCTAGTAGTACGCATCGGGAGAAT
TGACGAAATAACTCAAATTGATAAATCATACGGATCAGTTGTGATGGACA
GTGCCGGAATCGTCTTCCGTCACATTGCAAGGACAGGCATCTCGAACCTT
ACAGGTTGTGTCCACGTGCTTATAGGTCAAGAGTCGTCCTGTTGAAGCAG
TGGAGAAAATAGTGTTGGATGGGCTCAATTGAGCCGCCGGAGTGATACGA
AGGGGTGCATATTAAGGGGTGCCATGGTCTTGGTCCCGCGAATTAACCAT
GGGCAATTTCAGTAGAATGTTCGTCTGTGCTCTTTTTCCTGGTAATATTC
ATTGCGGAAAATGTGAGGAAGACGGGCTTGTTTGTAGTACGGGTAGTGGG
AATAGGCGGTCAATTTACGTCCCACTTCCGGAGGCCAAGTGTTGATCGTT
ACGTGCTGCTTTCACGTGTGCTTTGTTCGAGTTTCGAGTTTCGAATCCAT
GAATTATTCAACCGTGTTAACTCCACGTATGGACATACTATTATATCCTA
TCTTGACCGTGTCTAGGCTTTTTCAATGTAGGCGAGCGATGTACACGAAA
ATCTATCGGAGTAGAAATGTGCACAAAATCGAGATATCTGTTCATGAAAC
ATTCATAGTATTGGATAATCTCTTTTTTCGTGCCGAGAATAAGCACTACT
GTTTGTTGAGCTGGAACGTGCCTGTTTCGATAAATGGGGTGAAGTAGATC
GTTTAACGTACGAACAAGTATCCTCCCCTTCCCCTCGAAATGTTGTTTTT
GGGCGTCCGTCTTTCGGTGTGAGTTCGAGCACTTTCTTCTCTGTTGAGGC
GATATCTTGGAATTACTTACACTGTTGGGAGAAGGCGGAGCGGTGTATAA
GAAGGATATTTCGTTGACCGAAGTTTGAATTTGCGTTCGAGTTCACAAGC
CCACTTTCGTCCTGTAACTAACCCGTCCGATTTGCCCCCCGAAATTGTCG
TCCTAACAGGGTCGATGCAACTCCATTGGCTGCCCGGGTGGCTTCATCCC
GATCACTAACGCCTGGGAGGTCGAATGTGGGGATGAGTGCACGGTCGACC
TGTGCTGTGATGCCTTCTGCTGGGGTCACCCCTGCCCCGACGGCTTCATC
CCCAACCCTGACACCGTCAACGACATGTGCACCGACACGTGCACCACTGA
CAAATGTTGCGTGGCCCATGCCGGGACCGGACCGAACGGCGAGAACCTTG
CTGGCCCTCTCTGCAACTCCATCGGTTGCAACAACGGATCCATTCCGATC
ACAGACGCGCAGTTCGTGGAGTGCACCGGAGGTGTGTGCACGCAGGAAGA
GTGCTGTGACCTTTTCTGCTGGAGTCACCCATGCCCTGACGGCTTCATCC
CCAACCCCGACACCGTAAACGACATGTGCACCGACACTTGCTCTACTGAC
AAGTGCTGCGTGGCCCACGCCGGGAACGCGCCGAATGGTGACAACCTTGC
CGGCCCTCTCTGCAACTCCATCGGTTGCAACAACGGATCCATCCCTATCC
CAAACGCGCAGTTCGTGGAGTGCAGCGGTGGTATGTGCACGCAGGAGGAG
TGCTGCGACGCGTTCTGTTCTTTCCACGCCTGCCCCCCCGCTTTCACTCC
GATCCCCCTGGCGAACGAGACCATGTGTGCGGATGCGGGCTGCACTACCG
GACTGTGCTGCGAGGCTCTGTGCTCCGGATTCGCCTGCGAAAATGGCCTG
ATCCCCATTCCCGAGGCCTACATGGTGCGGTGTTCCAACGACATCTGCAC
CAATGATGAATGTTGCACGATGGTGAGCCAGCCTCTAAGACAGCGTGGAA
CTCGAGTTGATAATGTTGGATACCGTAACAAATACTCAGTTTAATTCAAT
GCCTACTGTTCCCAGTGCAGAGAAGGACAGGGTTTCAAATGGTGGAACGT
ATTGGAAATGTATGAGCTCCACACTTCGAGGCAGATATCTCTCTTTATCG
TTATACCTGCTAGTCGGAATGTCCGACATGCAGGCTAACCTTCAAGCCAG
TTATCAACTCTCCCTTCAACTCCACCTTGACGCCATTCTAGACGCGGAGG
ATATAACCCCCCCTGCTATTGCACTGGATGAGCGGTGTGGCACGAAGCAA
ATGCGAAAGCTGGCAGTTGAACCCGATTGTATAACACGTGTTTTGCGGGG
ATCGGAAATCGGGGCTTGGTACCTGTAACCGGGTCGTGGGCTCAAGCTCC
TCCCCTCAATACGCTTCCGAGTGGTGTATTTAGAGGTTGCACACCCCGGT
GGAAAGAAAGGCAGTTTTGTCCCGAGCATGACCATGTAAATGCCCTCTGG
GCTGAAGTTGAAGGAAGTAGTTGAGGTAAGTAGGTCACGGGTCCGCAAGT
ATAAATTATTCCTGGTGTGGTGGCAGCGCTTTTGTTGAATACCTTGACAC
GTTGTTTTTCCATGTATCTATCGTCGCATTGGCTCCTGCAGGTGAACGGT
AACCCTTGATGAGGGTAACGAGAGTTTCTGACGAAGTTGTGAAGCTCCCA
TGCAACGGCAATGAGGTTTCATGAAGTGATGCGTGGGACTGCTATGCGGA
AAGGACTTGTGGATGTGTTGCCGTCATGTGTGGGAGGCAAACTACTGTCT
GGTCTCGAGTCCGTACCTTGCCCATAGCGTTTGTGTGCAGCTGTTTCGCC
GTCATGCACTGTGGGTGATGTGGTGAACACTTAACTGCCTCTAGACGGGA
CAGTTCAGCTACTTGCTGCCGCGTATCGAACGTGACGTTTATTTGTCGTA
GTTGTGTCGTCCACAGGTATTGTGACCCCGGGAACGGAAAATTGTAGTGG
ATAAGGTAACAACCCCCAGGTTGGTGCTAGGCTTGACTAATAGTCTCACG
AAAAAGCATCGTGTGTTGTGTTGGGTTAATCCATGTTTGTGTTATCTTGG
CGTCGTGTATGGTTATTCATCAATTGTGTCTGGCGTTTCTAGGTAGATTC
GATGTTGACTGTTCTCTAGTAGTGGGCGTTTTATTTGATCTCAACGAGTA
CCTGCAATAGAAAATATTGTTGATGCTCACAAGCGGGTGAGTAGAAAAAG
AAAACGAGCAAAGAGTGGTACTAATGATTTTGTCGAAAGTGTTAGTTTGG
CACGTGGTTTCTGGTGATGCTAGGTGCACTCGTTGTTCCTTTAGTGCGTT
TGCTTTTGTTTGCTCTTAATTCGTCTCTAGCTCTTTAGTGGGGAATTATA
GTCGAATGCTTCCACTTGGTCGATGTTGCGCAGGTGGAAAGTGTAGATAA
GGATATCAAGATAATGTCATCGTCTGTTGAACATTCAAGCCTGCTGCGTG
AAGGTGATCCTCCAGGGTTATTGTCCAGGTGCCAGCCGTACATGTTTGAA
GGGTCTAATCCGTATGAGTAATTTTTCCTTTGCCAACAGTACACGTGCAT
GTCAACCCACCCATCTCTTCCGAGCACGGCAGAGTGTAACTGCTCCAAGT
TTTCGCTCGGGATTACGTACCTGACTGGGAACGTGAAAAATGTATCAGGA
AAGGGTTTGAAAACCGTGCAAACGAGGAAAATAACTATCTACGTAGACGG
TAAAATTAGAAGAACTTTGAGGAGAAATATCACGACCGGAACCGAAACTT
CTCA back to topCoding sequence (CDS) from alignment at H-paniculata_contig14738:951..5854+ >mRNA_H-paniculata_contig14738.2830.1 ID=mRNA_H-paniculata_contig14738.2830.1|Name=mRNA_H-paniculata_contig14738.2830.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1902bp|location=Sequence derived from alignment at H-paniculata_contig14738:951..5854+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGCACGAGCCGGAGTCACCGTAAGCGCCGTCGCCGTGCTAGCTCTTTG CTCCGGCGTGTTCGCTGCTGAAGAAGATGGCACGAGCCGGAGTCACCGTA AGCGCCGTCGCCGTGCTAGCTCTTTGCTCCGGCGTGTTCGCTGCTGAAGA AGGTGTCACTCTGCGTGGTAACTCAGTGGACAGGCGCCTGCAGGAGGTGT CACTCTGCGTGGTAACTCAGTGGACAGGCGCCTGCAGGAGGGTCGATGCA ACTCCATTGGCTGCCCGGGTGGCTTCATCCCGATCACTAACGCCTGGGAG GTCGAATGTGGGGATGAGTGCACGGTCGACCTGTGCTGTGATGCCTTCTG CTGGGGTCACCCCTGCCCCGACGGCTTCATCCCCAACCCTGACACCGTCA ACGACATGTGCACCGACACGTGCACCACTGACAAATGTTGCGTGGCCCAT GCCGGGACCGGACCGAACGGCGAGAACCTTGCTGGCCCTCTCTGCAACTC CATCGGTTGCAACAACGGATCCATTCCGATCACAGACGCGCAGTTCGTGG AGTGCACCGGAGGTGTGTGCACGCAGGAAGAGTGCTGTGACCTTTTCTGC TGGAGTCACCCATGCCCTGACGGCTTCATCCCCAACCCCGACACCGTAAA CGACATGTGCACCGACACTTGCTCTACTGACAAGTGCTGCGTGGCCCACG CCGGGAACGCGCCGAATGGTGACAACCTTGCCGGCCCTCTCTGCAACTCC ATCGGTTGCAACAACGGATCCATCCCTATCCCAAACGCGCAGTTCGTGGA GTGCAGCGGTGGTATGTGCACGCAGGAGGAGTGCTGCGACGCGTTCTGTT CTTTCCACGCCTGCCCCCCCGCTTTCACTCCGATCCCCCTGGCGAACGAG ACCATGTGTGCGGATGCGGGCTGCACTACCGGACTGTGCTGCGAGGCTCT GTGCTCCGGATTCGCCTGCGAAAATGGCCTGATCCCCATTCCCGAGGCCT ACATGGTGCGGTGTTCCAACGACATCTGCACCAATGATGAATGTTGCACG ATGGGTCGATGCAACTCCATTGGCTGCCCGGGTGGCTTCATCCCGATCAC TAACGCCTGGGAGGTCGAATGTGGGGATGAGTGCACGGTCGACCTGTGCT GTGATGCCTTCTGCTGGGGTCACCCCTGCCCCGACGGCTTCATCCCCAAC CCTGACACCGTCAACGACATGTGCACCGACACGTGCACCACTGACAAATG TTGCGTGGCCCATGCCGGGACCGGACCGAACGGCGAGAACCTTGCTGGCC CTCTCTGCAACTCCATCGGTTGCAACAACGGATCCATTCCGATCACAGAC GCGCAGTTCGTGGAGTGCACCGGAGGTGTGTGCACGCAGGAAGAGTGCTG TGACCTTTTCTGCTGGAGTCACCCATGCCCTGACGGCTTCATCCCCAACC CCGACACCGTAAACGACATGTGCACCGACACTTGCTCTACTGACAAGTGC TGCGTGGCCCACGCCGGGAACGCGCCGAATGGTGACAACCTTGCCGGCCC TCTCTGCAACTCCATCGGTTGCAACAACGGATCCATCCCTATCCCAAACG CGCAGTTCGTGGAGTGCAGCGGTGGTATGTGCACGCAGGAGGAGTGCTGC GACGCGTTCTGTTCTTTCCACGCCTGCCCCCCCGCTTTCACTCCGATCCC CCTGGCGAACGAGACCATGTGTGCGGATGCGGGCTGCACTACCGGACTGT GCTGCGAGGCTCTGTGCTCCGGATTCGCCTGCGAAAATGGCCTGATCCCC ATTCCCGAGGCCTACATGGTGCGGTGTTCCAACGACATCTGCACCAATGA TGAATGTTGCACGATGGTGAACGGTAACCCTTGAGTGAACGGTAACCCTT GA back to top
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