mRNA_H-paniculata_contig14731.2826.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14731.2826.1
Unique NamemRNA_H-paniculata_contig14731.2826.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14731.2826.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.640e-20
Identity = 58/140 (41.43%), Postives = 80/140 (57.14%), Query Frame = 1 
Query:    1 LLREELATYFAELKHSEDDSFSLLRYWALRAAPTIATNTKEVILPAKSPHLAVVACLYQSLGADSCQAERNFSALCFLISDLCTRMVAAKVEQMMFLRLNQDSIPEAHARNSVIYKQQRTAAETGEAVIEAQTVAAGNTI 420
            ++  EL  Y AE    E+  FSLL +W  R+ P     T EV      PHLA++A L+  + + SCQAERNFSAL FLI  L + M+  KVE++MFLRLN+  IPE  A +  +   +  AA   E V + +  AAG+ +
Sbjct:  366 IVERELRMYLAEDPAEEEYDFSLLEFWQRRSKPRTCAETGEV--EPGLPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEVKALHDAVEANKAAAARCQEKVAQVEAEAAGDAV 503
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BLAST of mRNA_H-paniculata_contig14731.2826.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.470e-20
Identity = 58/140 (41.43%), Postives = 80/140 (57.14%), Query Frame = 1 
Query:    1 LLREELATYFAELKHSEDDSFSLLRYWALRAAPTIATNTKEVILPAKSPHLAVVACLYQSLGADSCQAERNFSALCFLISDLCTRMVAAKVEQMMFLRLNQDSIPEAHARNSVIYKQQRTAAETGEAVIEAQTVAAGNTI 420
            ++  EL  Y AE    E+  FSLL +W  R+ P     T EV      PHLA++A L+  + + SCQAERNFSAL FLI  L + M+  KVE++MFLRLN+  IPE  A +  +   +  AA   E V + +  AAG+ +
Sbjct:  694 IVERELRMYLAEDPAEEEYDFSLLEFWQRRSKPRTCAETGEV--EPGLPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEVKALHDAVEANKAAAARCQEKVAQVEAEAAGDAV 831
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14731.2826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE1.640e-2041.43Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE2.470e-2041.43Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14731contigH-paniculata_contig14731:1469..2288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size821
Cds size435
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929172.9038663-CDS-H-paniculata_contig14731:1468..19031622929172.9038663-CDS-H-paniculata_contig14731:1468..1903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14731 1469..1903 +
1691480759.6509326-CDS-H-paniculata_contig14731:1468..19031691480759.6509326-CDS-H-paniculata_contig14731:1468..1903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14731 1469..1903 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929172.9150288-UTR-H-paniculata_contig14731:1903..22881622929172.9150288-UTR-H-paniculata_contig14731:1903..2288Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14731 1904..2288 +
1691480759.6612504-UTR-H-paniculata_contig14731:1903..22881691480759.6612504-UTR-H-paniculata_contig14731:1903..2288Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14731 1904..2288 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14731.2826.1prot_H-paniculata_contig14731.2826.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14731 1469..1903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14731.2826.1

>prot_H-paniculata_contig14731.2826.1 ID=prot_H-paniculata_contig14731.2826.1|Name=mRNA_H-paniculata_contig14731.2826.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp
LLREELATYFAELKHSEDDSFSLLRYWALRAAPTIATNTKEVILPAKSPH
LAVVACLYQSLGADSCQAERNFSALCFLISDLCTRMVAAKVEQMMFLRLN
QDSIPEAHARNSVIYKQQRTAAETGEAVIEAQTVAAGNTIEILS*
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mRNA from alignment at H-paniculata_contig14731:1469..2288+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14731.2826.1 ID=mRNA_H-paniculata_contig14731.2826.1|Name=mRNA_H-paniculata_contig14731.2826.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=820bp|location=Sequence derived from alignment at H-paniculata_contig14731:1469..2288+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCTTCGAGAAGAACTGGCAACCTACTTCGCCGAGTTGAAACATTCAGA
GGACGACAGCTTTTCTCTTCTGCGCTACTGGGCCCTCAGGGCGGCTCCGA
CCATAGCGACCAACACGAAGGAAGTCATCCTGCCTGCGAAGTCCCCACAT
CTGGCCGTCGTAGCTTGTTTGTACCAATCGTTGGGCGCTGATAGCTGTCA
GGCGGAGCGAAACTTCTCTGCTCTGTGTTTCCTGATAAGCGATTTGTGCA
CCAGGATGGTGGCGGCCAAAGTCGAGCAAATGATGTTTCTGCGGCTCAAC
CAAGACAGCATTCCAGAGGCTCACGCTCGGAATTCCGTCATCTACAAGCA
GCAGAGGACCGCTGCCGAGACTGGAGAGGCAGTCATAGAAGCACAGACAG
TTGCAGCTGGTAACACGATAGAAATTTTGAGCTGAGGTCACATGTGCCTG
AGCACTTATGAATAGGGCTTCCAATAACGTGTGTGTTTGGGAATGCTGGG
ACTGGTTTCTGCTTTCTGTAATCGGGTACAGATATGCACGAGATGGGAGG
AGTAGGACAGCGAGGAAAAAATCATACCTTAGGCACAGTGTAATCAATGG
GGATGATAGTGTTTTGGTTTCTGAGTTGGTTATCGTGCACCGGGAAAGAG
GTAGCCCGCAGCAGGGTCTCGATTTTGAGCTGTAAACGTATTCAATTCGT
TATCGAGCGGTGGGTAAAGCGATGCTGTAGATGACAATTTATGATTTTTC
GCGTTCGTGCCGCAGACGGCAGGCTTACAAAAATAAATAAATCAAGAATT
ACAACATTGATATTCAAGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig14731:1469..2288+

>mRNA_H-paniculata_contig14731.2826.1 ID=mRNA_H-paniculata_contig14731.2826.1|Name=mRNA_H-paniculata_contig14731.2826.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at H-paniculata_contig14731:1469..2288+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCTTCGAGAAGAACTGGCAACCTACTTCGCCGAGTTGAAACATTCAGA
GGACGACAGCTTTTCTCTTCTGCGCTACTGGGCCCTCAGGGCGGCTCCGA
CCATAGCGACCAACACGAAGGAAGTCATCCTGCCTGCGAAGTCCCCACAT
CTGGCCGTCGTAGCTTGTTTGTACCAATCGTTGGGCGCTGATAGCTGTCA
GGCGGAGCGAAACTTCTCTGCTCTGTGTTTCCTGATAAGCGATTTGTGCA
CCAGGATGGTGGCGGCCAAAGTCGAGCAAATGATGTTTCTGCGGCTCAAC
CAAGACAGCATTCCAGAGGCTCACGCTCGGAATTCCGTCATCTACAAGCA
GCAGAGGACCGCTGCCGAGACTGGAGAGGCAGTCATAGAAGCACAGACAG
TTGCAGCTGGTAACACGATAGAAATTTTGAGCTGACTTCTTCGAGAAGAA
CTGGCAACCTACTTCGCCGAGTTGAAACATTCAGAGGACGACAGCTTTTC
TCTTCTGCGCTACTGGGCCCTCAGGGCGGCTCCGACCATAGCGACCAACA
CGAAGGAAGTCATCCTGCCTGCGAAGTCCCCACATCTGGCCGTCGTAGCT
TGTTTGTACCAATCGTTGGGCGCTGATAGCTGTCAGGCGGAGCGAAACTT
CTCTGCTCTGTGTTTCCTGATAAGCGATTTGTGCACCAGGATGGTGGCGG
CCAAAGTCGAGCAAATGATGTTTCTGCGGCTCAACCAAGACAGCATTCCA
GAGGCTCACGCTCGGAATTCCGTCATCTACAAGCAGCAGAGGACCGCTGC
CGAGACTGGAGAGGCAGTCATAGAAGCACAGACAGTTGCAGCTGGTAACA
CGATAGAAATTTTGAGCTGA
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