mRNA_H-paniculata_contig14718.2818.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig14718.2818.1 vs. uniprot
Match: A0A6A3BSI6_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BSI6_HIBSY) HSP 1 Score: 57.8 bits (138), Expect = 5.010e-8 Identity = 28/72 (38.89%), Postives = 43/72 (59.72%), Query Frame = 1 Query: 1 SRRRTTEPLELVHTDIAGSVD-KSFGGCRFAIVFVDAYSRMSQVYTLRLISEALWALKKFERDVARANGLQV 213 S R +PLEL+HTD+ GS+ S G + ++F+D +SR + VY L+ SE KKF+ V R +G ++ Sbjct: 398 SETRAKKPLELIHTDVCGSIKPSSLGNSNYFLLFIDDFSRKTWVYFLKQKSEVFEVFKKFKVAVERESGRKI 469
BLAST of mRNA_H-paniculata_contig14718.2818.1 vs. uniprot
Match: UPI001E695BA3 (uncharacterized protein LOC123914985 n=1 Tax=Trifolium pratense TaxID=57577 RepID=UPI001E695BA3) HSP 1 Score: 57.4 bits (137), Expect = 6.630e-8 Identity = 29/59 (49.15%), Postives = 41/59 (69.49%), Query Frame = 1 Query: 7 RRTTEPLELVHTDIAGSVDK-SFGGCRFAIVFVDAYSRMSQVYTLRLISEALWALKKFE 180 +R + L+++H+DI G + S GG ++ I FVD YSRM +YTL+L SEAL LKKF+ Sbjct: 342 KRASAVLQVIHSDICGPFEVVSLGGSKYFITFVDEYSRMIWLYTLKLKSEALEVLKKFK 400
BLAST of mRNA_H-paniculata_contig14718.2818.1 vs. uniprot
Match: A0A8H8JVA7_9AGAM (Pol polyprotein/retrotransposon n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JVA7_9AGAM) HSP 1 Score: 57.4 bits (137), Expect = 6.830e-8 Identity = 25/71 (35.21%), Postives = 44/71 (61.97%), Query Frame = 1 Query: 1 SRRRTTEPLELVHTDIAGSVDKSFGGCRFAIVFVDAYSRMSQVYTLRLISEALWALKKFERDVARANGLQV 213 S T++PLEL+H+D+ G +D S GG R+ ++FVD Y+RM+ V L+ + A ++ + ++G +V Sbjct: 135 STSTTSQPLELLHSDVCGPLDASIGGVRYVLLFVDDYTRMAWVCLLKTKDQVFEAFRRLRAHLELSSGHRV 205
BLAST of mRNA_H-paniculata_contig14718.2818.1 vs. uniprot
Match: A0A1Y1INB1_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1INB1_KLENI) HSP 1 Score: 57.0 bits (136), Expect = 9.380e-8 Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 1 Query: 1 SRRRTTEPLELVHTDIAGSVD-KSFGGCRFAIVFVDAYSRMSQVYTLRLISEALWALKKFERDVARANGLQV 213 S R ++ PLELVHTD+ G++ KS GG ++A+ F+D YSR V L+ +A AL+ + V GL+V Sbjct: 386 SDRESSRPLELVHTDLCGTIPCKSAGGAKYAVTFIDDYSRCGVVQLLQTKEQARRALEAYVNLVENQLGLKV 457
BLAST of mRNA_H-paniculata_contig14718.2818.1 vs. uniprot
Match: A0A371HS04_MUCPR (Uncharacterized protein (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371HS04_MUCPR) HSP 1 Score: 55.5 bits (132), Expect = 3.140e-7 Identity = 26/68 (38.24%), Postives = 39/68 (57.35%), Query Frame = 1 Query: 1 SRRRTTEPLELVHTDIAGSVDKSFGGCRFAIVFVDAYSRMSQVYTLRLISEALWALKKFERDVARANG 204 S RR L+LVH+D+ + ++S GG ++ + F+D +SR VY L+ E L A K+F V R G Sbjct: 319 SGRRRKHILDLVHSDVCSTSERSLGGAQYFVTFIDDHSRKLWVYPLKRKDEVLRAFKEFHASVERETG 386
BLAST of mRNA_H-paniculata_contig14718.2818.1 vs. uniprot
Match: A0A371ETY2_MUCPR (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371ETY2_MUCPR) HSP 1 Score: 55.5 bits (132), Expect = 3.150e-7 Identity = 26/68 (38.24%), Postives = 39/68 (57.35%), Query Frame = 1 Query: 1 SRRRTTEPLELVHTDIAGSVDKSFGGCRFAIVFVDAYSRMSQVYTLRLISEALWALKKFERDVARANG 204 S RR L+LVH+D+ + ++S GG ++ + F+D +SR VY L+ E L A K+F V R G Sbjct: 336 SGRRRKHILDLVHSDVCSTSERSLGGAQYFVTFIDDHSRKLWVYPLKRKDEVLRAFKEFHASVERETG 403
BLAST of mRNA_H-paniculata_contig14718.2818.1 vs. uniprot
Match: UPI001E69635E (zinc finger BED domain-containing protein RICESLEEPER 1-like n=1 Tax=Trifolium pratense TaxID=57577 RepID=UPI001E69635E) HSP 1 Score: 55.5 bits (132), Expect = 3.260e-7 Identity = 27/59 (45.76%), Postives = 40/59 (67.80%), Query Frame = 1 Query: 7 RRTTEPLELVHTDIAGSVD-KSFGGCRFAIVFVDAYSRMSQVYTLRLISEALWALKKFE 180 +R + L+++H+DI G + S GG ++ I F+D YSRM +YTL+L SEAL KKF+ Sbjct: 178 KRASGVLQVIHSDICGPFEVASLGGSKYFITFIDEYSRMIWLYTLKLKSEALEVFKKFK 236
BLAST of mRNA_H-paniculata_contig14718.2818.1 vs. uniprot
Match: A0A8H8MSC5_9AGAM (Pol polyprotein/retrotransposon n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8MSC5_9AGAM) HSP 1 Score: 55.5 bits (132), Expect = 3.280e-7 Identity = 25/71 (35.21%), Postives = 44/71 (61.97%), Query Frame = 1 Query: 1 SRRRTTEPLELVHTDIAGSVDKSFGGCRFAIVFVDAYSRMSQVYTLRLISEALWALKKFERDVARANGLQV 213 S T++PLEL+H+D+ G +D S GG R+ + FVD Y+RM+ V L+ + A ++ + + ++G +V Sbjct: 609 STSTTSQPLELLHSDVCGPLDASIGGVRYVLSFVDDYTRMAWVCLLKTKDQVFEAFRRPQAHLELSSGHRV 679
BLAST of mRNA_H-paniculata_contig14718.2818.1 vs. uniprot
Match: A0A6A4EJA0_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4EJA0_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 5.240e-7 Identity = 23/69 (33.33%), Postives = 44/69 (63.77%), Query Frame = 1 Query: 10 RTTEPLELVHTDIAGSVD-KSFGGCRFAIVFVDAYSRMSQVYTLRLISEALWALKKFERDVARANGLQV 213 ++ E L+L+H+D+ G + K+ GGC +A++F+D +SR VY ++ +E L K+F+ D+ A ++ Sbjct: 15 KSAEVLDLIHSDVMGPMQTKTPGGCTYAVMFIDDFSRHVTVYFMKKKAEVLEKFKRFKADMENATERKI 83
BLAST of mRNA_H-paniculata_contig14718.2818.1 vs. uniprot
Match: A0A0A1UJC6_9AGAM (Pol polyprotein/retrotransposon, putative (Fragment) n=1 Tax=Rhizoctonia solani AG-3 Rhs1AP TaxID=1086054 RepID=A0A0A1UJC6_9AGAM) HSP 1 Score: 54.7 bits (130), Expect = 6.090e-7 Identity = 25/71 (35.21%), Postives = 44/71 (61.97%), Query Frame = 1 Query: 1 SRRRTTEPLELVHTDIAGSVDKSFGGCRFAIVFVDAYSRMSQVYTLRLISEALWALKKFERDVARANGLQV 213 S R ++PLEL+H+DI G + + G R+A++F+D YSRM V L+ S+++ A + + ++ G Q+ Sbjct: 182 SSSRASQPLELIHSDICGPHEPAVDGSRYALMFLDDYSRMLWVCFLKAKSDSMSAFIQLRAVLEKSTGFQI 252 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14718.2818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14718.2818.1 >prot_H-paniculata_contig14718.2818.1 ID=prot_H-paniculata_contig14718.2818.1|Name=mRNA_H-paniculata_contig14718.2818.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp SRRRTTEPLELVHTDIAGSVDKSFGGCRFAIVFVDAYSRMSQVYTLRLISback to top mRNA from alignment at H-paniculata_contig14718:143..358- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig14718.2818.1 ID=mRNA_H-paniculata_contig14718.2818.1|Name=mRNA_H-paniculata_contig14718.2818.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at H-paniculata_contig14718:143..358- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig14718:143..358- >mRNA_H-paniculata_contig14718.2818.1 ID=mRNA_H-paniculata_contig14718.2818.1|Name=mRNA_H-paniculata_contig14718.2818.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig14718:143..358- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |