mRNA_H-paniculata_contig14718.2818.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14718.2818.1
Unique NamemRNA_H-paniculata_contig14718.2818.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14718.2818.1 vs. uniprot
Match: A0A6A3BSI6_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BSI6_HIBSY)

HSP 1 Score: 57.8 bits (138), Expect = 5.010e-8
Identity = 28/72 (38.89%), Postives = 43/72 (59.72%), Query Frame = 1
Query:    1 SRRRTTEPLELVHTDIAGSVD-KSFGGCRFAIVFVDAYSRMSQVYTLRLISEALWALKKFERDVARANGLQV 213
            S  R  +PLEL+HTD+ GS+   S G   + ++F+D +SR + VY L+  SE     KKF+  V R +G ++
Sbjct:  398 SETRAKKPLELIHTDVCGSIKPSSLGNSNYFLLFIDDFSRKTWVYFLKQKSEVFEVFKKFKVAVERESGRKI 469          
BLAST of mRNA_H-paniculata_contig14718.2818.1 vs. uniprot
Match: UPI001E695BA3 (uncharacterized protein LOC123914985 n=1 Tax=Trifolium pratense TaxID=57577 RepID=UPI001E695BA3)

HSP 1 Score: 57.4 bits (137), Expect = 6.630e-8
Identity = 29/59 (49.15%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    7 RRTTEPLELVHTDIAGSVDK-SFGGCRFAIVFVDAYSRMSQVYTLRLISEALWALKKFE 180
            +R +  L+++H+DI G  +  S GG ++ I FVD YSRM  +YTL+L SEAL  LKKF+
Sbjct:  342 KRASAVLQVIHSDICGPFEVVSLGGSKYFITFVDEYSRMIWLYTLKLKSEALEVLKKFK 400          
BLAST of mRNA_H-paniculata_contig14718.2818.1 vs. uniprot
Match: A0A8H8JVA7_9AGAM (Pol polyprotein/retrotransposon n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JVA7_9AGAM)

HSP 1 Score: 57.4 bits (137), Expect = 6.830e-8
Identity = 25/71 (35.21%), Postives = 44/71 (61.97%), Query Frame = 1
Query:    1 SRRRTTEPLELVHTDIAGSVDKSFGGCRFAIVFVDAYSRMSQVYTLRLISEALWALKKFERDVARANGLQV 213
            S   T++PLEL+H+D+ G +D S GG R+ ++FVD Y+RM+ V  L+   +   A ++    +  ++G +V
Sbjct:  135 STSTTSQPLELLHSDVCGPLDASIGGVRYVLLFVDDYTRMAWVCLLKTKDQVFEAFRRLRAHLELSSGHRV 205          
BLAST of mRNA_H-paniculata_contig14718.2818.1 vs. uniprot
Match: A0A1Y1INB1_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1INB1_KLENI)

HSP 1 Score: 57.0 bits (136), Expect = 9.380e-8
Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 1
Query:    1 SRRRTTEPLELVHTDIAGSVD-KSFGGCRFAIVFVDAYSRMSQVYTLRLISEALWALKKFERDVARANGLQV 213
            S R ++ PLELVHTD+ G++  KS GG ++A+ F+D YSR   V  L+   +A  AL+ +   V    GL+V
Sbjct:  386 SDRESSRPLELVHTDLCGTIPCKSAGGAKYAVTFIDDYSRCGVVQLLQTKEQARRALEAYVNLVENQLGLKV 457          
BLAST of mRNA_H-paniculata_contig14718.2818.1 vs. uniprot
Match: A0A371HS04_MUCPR (Uncharacterized protein (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371HS04_MUCPR)

HSP 1 Score: 55.5 bits (132), Expect = 3.140e-7
Identity = 26/68 (38.24%), Postives = 39/68 (57.35%), Query Frame = 1
Query:    1 SRRRTTEPLELVHTDIAGSVDKSFGGCRFAIVFVDAYSRMSQVYTLRLISEALWALKKFERDVARANG 204
            S RR    L+LVH+D+  + ++S GG ++ + F+D +SR   VY L+   E L A K+F   V R  G
Sbjct:  319 SGRRRKHILDLVHSDVCSTSERSLGGAQYFVTFIDDHSRKLWVYPLKRKDEVLRAFKEFHASVERETG 386          
BLAST of mRNA_H-paniculata_contig14718.2818.1 vs. uniprot
Match: A0A371ETY2_MUCPR (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371ETY2_MUCPR)

HSP 1 Score: 55.5 bits (132), Expect = 3.150e-7
Identity = 26/68 (38.24%), Postives = 39/68 (57.35%), Query Frame = 1
Query:    1 SRRRTTEPLELVHTDIAGSVDKSFGGCRFAIVFVDAYSRMSQVYTLRLISEALWALKKFERDVARANG 204
            S RR    L+LVH+D+  + ++S GG ++ + F+D +SR   VY L+   E L A K+F   V R  G
Sbjct:  336 SGRRRKHILDLVHSDVCSTSERSLGGAQYFVTFIDDHSRKLWVYPLKRKDEVLRAFKEFHASVERETG 403          
BLAST of mRNA_H-paniculata_contig14718.2818.1 vs. uniprot
Match: UPI001E69635E (zinc finger BED domain-containing protein RICESLEEPER 1-like n=1 Tax=Trifolium pratense TaxID=57577 RepID=UPI001E69635E)

HSP 1 Score: 55.5 bits (132), Expect = 3.260e-7
Identity = 27/59 (45.76%), Postives = 40/59 (67.80%), Query Frame = 1
Query:    7 RRTTEPLELVHTDIAGSVD-KSFGGCRFAIVFVDAYSRMSQVYTLRLISEALWALKKFE 180
            +R +  L+++H+DI G  +  S GG ++ I F+D YSRM  +YTL+L SEAL   KKF+
Sbjct:  178 KRASGVLQVIHSDICGPFEVASLGGSKYFITFIDEYSRMIWLYTLKLKSEALEVFKKFK 236          
BLAST of mRNA_H-paniculata_contig14718.2818.1 vs. uniprot
Match: A0A8H8MSC5_9AGAM (Pol polyprotein/retrotransposon n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8MSC5_9AGAM)

HSP 1 Score: 55.5 bits (132), Expect = 3.280e-7
Identity = 25/71 (35.21%), Postives = 44/71 (61.97%), Query Frame = 1
Query:    1 SRRRTTEPLELVHTDIAGSVDKSFGGCRFAIVFVDAYSRMSQVYTLRLISEALWALKKFERDVARANGLQV 213
            S   T++PLEL+H+D+ G +D S GG R+ + FVD Y+RM+ V  L+   +   A ++ +  +  ++G +V
Sbjct:  609 STSTTSQPLELLHSDVCGPLDASIGGVRYVLSFVDDYTRMAWVCLLKTKDQVFEAFRRPQAHLELSSGHRV 679          
BLAST of mRNA_H-paniculata_contig14718.2818.1 vs. uniprot
Match: A0A6A4EJA0_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4EJA0_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 5.240e-7
Identity = 23/69 (33.33%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   10 RTTEPLELVHTDIAGSVD-KSFGGCRFAIVFVDAYSRMSQVYTLRLISEALWALKKFERDVARANGLQV 213
            ++ E L+L+H+D+ G +  K+ GGC +A++F+D +SR   VY ++  +E L   K+F+ D+  A   ++
Sbjct:   15 KSAEVLDLIHSDVMGPMQTKTPGGCTYAVMFIDDFSRHVTVYFMKKKAEVLEKFKRFKADMENATERKI 83          
BLAST of mRNA_H-paniculata_contig14718.2818.1 vs. uniprot
Match: A0A0A1UJC6_9AGAM (Pol polyprotein/retrotransposon, putative (Fragment) n=1 Tax=Rhizoctonia solani AG-3 Rhs1AP TaxID=1086054 RepID=A0A0A1UJC6_9AGAM)

HSP 1 Score: 54.7 bits (130), Expect = 6.090e-7
Identity = 25/71 (35.21%), Postives = 44/71 (61.97%), Query Frame = 1
Query:    1 SRRRTTEPLELVHTDIAGSVDKSFGGCRFAIVFVDAYSRMSQVYTLRLISEALWALKKFERDVARANGLQV 213
            S  R ++PLEL+H+DI G  + +  G R+A++F+D YSRM  V  L+  S+++ A  +    + ++ G Q+
Sbjct:  182 SSSRASQPLELIHSDICGPHEPAVDGSRYALMFLDDYSRMLWVCFLKAKSDSMSAFIQLRAVLEKSTGFQI 252          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14718.2818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3BSI6_HIBSY5.010e-838.89Integrase catalytic domain-containing protein n=1 ... [more]
UPI001E695BA36.630e-849.15uncharacterized protein LOC123914985 n=1 Tax=Trifo... [more]
A0A8H8JVA7_9AGAM6.830e-835.21Pol polyprotein/retrotransposon n=1 Tax=Ceratobasi... [more]
A0A1Y1INB1_KLENI9.380e-841.67Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A371HS04_MUCPR3.140e-738.24Uncharacterized protein (Fragment) n=1 Tax=Mucuna ... [more]
A0A371ETY2_MUCPR3.150e-738.24Integrase catalytic domain-containing protein (Fra... [more]
UPI001E69635E3.260e-745.76zinc finger BED domain-containing protein RICESLEE... [more]
A0A8H8MSC5_9AGAM3.280e-735.21Pol polyprotein/retrotransposon n=1 Tax=Ceratobasi... [more]
A0A6A4EJA0_9STRA5.240e-733.33Integrase catalytic domain-containing protein n=3 ... [more]
A0A0A1UJC6_9AGAM6.090e-735.21Pol polyprotein/retrotransposon, putative (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14718contigH-paniculata_contig14718:143..358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929171.6073449-CDS-H-paniculata_contig14718:142..3581622929171.6073449-CDS-H-paniculata_contig14718:142..358Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14718 143..358 -
1691480759.295407-CDS-H-paniculata_contig14718:142..3581691480759.295407-CDS-H-paniculata_contig14718:142..358Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14718 143..358 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14718.2818.1prot_H-paniculata_contig14718.2818.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14718 143..358 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14718.2818.1

>prot_H-paniculata_contig14718.2818.1 ID=prot_H-paniculata_contig14718.2818.1|Name=mRNA_H-paniculata_contig14718.2818.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
SRRRTTEPLELVHTDIAGSVDKSFGGCRFAIVFVDAYSRMSQVYTLRLIS
EALWALKKFERDVARANGLQV*
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mRNA from alignment at H-paniculata_contig14718:143..358-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14718.2818.1 ID=mRNA_H-paniculata_contig14718.2818.1|Name=mRNA_H-paniculata_contig14718.2818.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at H-paniculata_contig14718:143..358- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGAGAAGACGGACGACCGAGCCGTTGGAGCTGGTGCACACTGACATAGC CGGATCGGTGGACAAGTCTTTCGGAGGATGTCGCTTCGCCATCGTCTTCG TCGACGCCTACAGCAGAATGAGCCAAGTCTATACCCTGCGACTAATATCG GAGGCGCTATGGGCCCTGAAGAAATTTGAGAGGGACGTAGCGAGGGCAAA CGGTTTGCAGGTTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig14718:143..358-

>mRNA_H-paniculata_contig14718.2818.1 ID=mRNA_H-paniculata_contig14718.2818.1|Name=mRNA_H-paniculata_contig14718.2818.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig14718:143..358- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGAGAAGACGGACGACCGAGCCGTTGGAGCTGGTGCACACTGACATAGC
CGGATCGGTGGACAAGTCTTTCGGAGGATGTCGCTTCGCCATCGTCTTCG
TCGACGCCTACAGCAGAATGAGCCAAGTCTATACCCTGCGACTAATATCG
GAGGCGCTATGGGCCCTGAAGAAATTTGAGAGGGACGTAGCGAGGGCAAA
CGGTTTGCAGGTTTAGTCGAGAAGACGGACGACCGAGCCGTTGGAGCTGG
TGCACACTGACATAGCCGGATCGGTGGACAAGTCTTTCGGAGGATGTCGC
TTCGCCATCGTCTTCGTCGACGCCTACAGCAGAATGAGCCAAGTCTATAC
CCTGCGACTAATATCGGAGGCGCTATGGGCCCTGAAGAAATTTGAGAGGG
ACGTAGCGAGGGCAAACGGTTTGCAGGTTTAG
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