mRNA_H-paniculata_contig147.2803.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig147.2803.1
Unique NamemRNA_H-paniculata_contig147.2803.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig147.2803.1 vs. uniprot
Match: A0A6H5KB20_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB20_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 3.310e-63
Identity = 106/134 (79.10%), Postives = 115/134 (85.82%), Query Frame = 1
Query:    7 QALVLSEPTVFLGALWIPHIRNNTAMEAVLSSDEARNARVIFCHVDITGASMNDGVSSHAGIPRSAFPSNVSTFSGHFHKPHTVG--DGFIRYVGSPYQTCLSESGQSKALLVLDADTWAEKEAIPLSIGRRFF 402
            QALVLSEPT+FLGALWIPH RNNT ME +L S+EAR AR IFCHVDI GA+MN  VSSH+GIPRSAFP NV  FSGH HKPHT+G  DGFIRYVGSPYQT LSESGQSKAL+VLDA+TW EKE +PL IGRRFF
Sbjct:  479 QALVLSEPTLFLGALWIPHRRNNTEMEGLLGSEEARGARAIFCHVDIKGAAMNGDVSSHSGIPRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVLDAETWEEKELVPLDIGRRFF 612          
BLAST of mRNA_H-paniculata_contig147.2803.1 vs. uniprot
Match: D7FQ73_ECTSI (DNA double-strand break repair rad50 ATPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ73_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 8.380e-63
Identity = 106/134 (79.10%), Postives = 114/134 (85.07%), Query Frame = 1
Query:    7 QALVLSEPTVFLGALWIPHIRNNTAMEAVLSSDEARNARVIFCHVDITGASMNDGVSSHAGIPRSAFPSNVSTFSGHFHKPHTVG--DGFIRYVGSPYQTCLSESGQSKALLVLDADTWAEKEAIPLSIGRRFF 402
            QALVLSEPT+FLGALWIPH RNNT ME +L SDEAR A  IFCHVDI GA+MN  VSSH+GIPRSAFP NV  FSGH HKPHT+G  DGFIRYVGSPYQT LSESGQSKAL+VLDA+TW EKE +PL IGRRFF
Sbjct:  479 QALVLSEPTLFLGALWIPHRRNNTEMEGLLGSDEARGAGAIFCHVDIKGAAMNGDVSSHSGIPRSAFPPNVPAFSGHVHKPHTLGGRDGFIRYVGSPYQTALSESGQSKALIVLDAETWEEKELVPLDIGRRFF 612          
BLAST of mRNA_H-paniculata_contig147.2803.1 vs. uniprot
Match: A0A836CHZ6_9STRA (Metallophos domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHZ6_9STRA)

HSP 1 Score: 169 bits (428), Expect = 4.190e-46
Identity = 75/132 (56.82%), Postives = 100/132 (75.76%), Query Frame = 1
Query:    7 QALVLSEPTVFLGALWIPHIRNNTAMEAVLSSDEARNARVIFCHVDITGASMNDGVSSHAGIPRSAFPSNVSTFSGHFHKPHTVGDGFIRYVGSPYQTCLSESGQSKALLVLDADTWAEKEAIPLSIGRRFF 402
             A+V+S+PT+FLGALW+PH R+  A+E VL+   A  AR +FCHVD  GA+MNDG+ S  GI  SAFP+    +SGHFH+PH+VG G +RYVGSPYQT L+E+GQ K LL+LDA  W+ ++A+ + +GRRFF
Sbjct:  380 HAVVISQPTLFLGALWLPHCRDQRALERVLALPAAAAARAVFCHVDARGAAMNDGIYSRTGISPSAFPAGARVYSGHFHRPHSVGGGRVRYVGSPYQTSLAEAGQRKELLILDAADWSVRDAVEICVGRRFF 511          
BLAST of mRNA_H-paniculata_contig147.2803.1 vs. uniprot
Match: B8CBT2_THAPS (ABC transporter (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBT2_THAPS)

HSP 1 Score: 137 bits (345), Expect = 6.140e-35
Identity = 70/133 (52.63%), Postives = 93/133 (69.92%), Query Frame = 1
Query:    4 PQALVLSEPTVFLGALWIPHIRNNTAMEAVLSSDEARNARVIFCHVDITGASMNDGVSSHAGIPRSAFPSNVSTFSGHFHKPHTVGDGFIRYVGSPYQTCLSESGQSKALLVLDAD-TWAEKEAIPLSIGRRF 399
            P  L+ S PT F  AL++PHIR+ + M+AVLSS EA N+  +F H D+ GASMND + S  G+  S FPS+   +SGHFHKPH V     +YVGSPYQT LSE+GQSK+L+++D++  W   E IP+ IGRR+
Sbjct:   98 PGPLIFSHPTKFKDALFVPHIRDKSTMKAVLSSKEAINSSALFVHADVKGASMNDLIKSQHGLSASFFPSDRYVYSGHFHKPHFVQLS-KKYVGSPYQTSLSEAGQSKSLILVDSEQNWKCVEEIPIDIGRRY 229          
BLAST of mRNA_H-paniculata_contig147.2803.1 vs. uniprot
Match: K0RAD6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RAD6_THAOC)

HSP 1 Score: 136 bits (342), Expect = 1.590e-34
Identity = 67/136 (49.26%), Postives = 90/136 (66.18%), Query Frame = 1
Query:    4 PQALVLSEPTVFLGALWIPHIRNNTAMEAVLSSDEARNARVIFCHVDITGASMNDGVSSHAGIPRSAFPSNVSTFSGHFHKPHTV--GDGFIRYVGSPYQTCLSESGQSKALLVLDADT-WAEKEAIPLSIGRRFF 402
            P  ++ S PT FL AL++PHIR+   M+ +LSS+EA  +  +F H D+ GASMND + S  GI  S FP N   +SGHFHKPH +  G   +RYVGSPYQT LSE GQ K+LL+LD+   W   + IP+ +G +F+
Sbjct:  369 PGPMIFSHPTKFLDALFVPHIRDKAKMQTILSSEEAIASEALFVHADVRGASMNDLILSQHGISSSNFPPNKLIYSGHFHKPHAITGGASTLRYVGSPYQTSLSECGQQKSLLLLDSQLKWDCVQEIPIDVGPKFY 504          
BLAST of mRNA_H-paniculata_contig147.2803.1 vs. uniprot
Match: A0A4D9DAR7_9STRA (Metallophos domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAR7_9STRA)

HSP 1 Score: 126 bits (317), Expect = 3.730e-31
Identity = 64/147 (43.54%), Postives = 91/147 (61.90%), Query Frame = 1
Query:    7 QALVLSEPTVFLGALWIPHIRNNTAMEAVLSS------DEARNAR----VIFCHVDITGASMNDGVSSHAGIPRSAFPSNVSTFSGHFHKPHTVGDGFIRYVGSPYQTCLSESGQSKALLVL-----DADTWAEKEAIPLSIGRRFF 402
            QALV+S+PT+FL ALW+P+ R++ +  A L++       EA ++      +FCHVD+ GA  ND  +S  G+    FPS++ T+SGHFH+PH V    + YVGSPYQ  L+E+GQ K LL+L       D W E   I + +GRR+F
Sbjct:  232 QALVVSQPTLFLNALWLPYARDSASTRAFLAAYRDPIEQEAGSSPPPVGAVFCHVDVRGAPTNDNTASRRGLNPGIFPSHIPTYSGHFHRPHRVPASSVTYVGSPYQVSLAEAGQRKRLLLLRRPLGPGDPWMEVSDIAIDVGRRYF 378          
BLAST of mRNA_H-paniculata_contig147.2803.1 vs. uniprot
Match: A0A448ZKB3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZKB3_9STRA)

HSP 1 Score: 125 bits (314), Expect = 9.380e-31
Identity = 65/136 (47.79%), Postives = 89/136 (65.44%), Query Frame = 1
Query:    4 PQALVLSEPTVFLGALWIPHIRNNTAMEAVLSSDEARNARVIFCHVDITGASMNDGVSSHAGIPRSAFPSNVSTFSGHFHKPHTVGDGF---IRYVGSPYQTCLSESGQSKALLVLDADTWAEKEAIPLSIGRRFF 402
            P  LVLS PT F  AL++PH+R+  AM+A+LSS E +++  +F H ++ GA MND V S  GI  S FP +   +SGHFH PH+V       I YVGSPYQ  L+E+ Q K L+VL+ + W  ++ IP+S+GRR F
Sbjct:  271 PGPLVLSHPTRFRNALFVPHVRDINAMKAILSSRECQDSSALFLHAEVKGALMNDMVVSTQGISPSMFPMHKHVYSGHFHNPHSVKSSLCSTIEYVGSPYQISLAEAHQEKQLVVLN-EKWECQKRIPISVGRRHF 405          
BLAST of mRNA_H-paniculata_contig147.2803.1 vs. uniprot
Match: A0A7S3V904_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V904_9STRA)

HSP 1 Score: 124 bits (311), Expect = 2.400e-30
Identity = 65/138 (47.10%), Postives = 89/138 (64.49%), Query Frame = 1
Query:    4 PQALVLSEPTVFLGALWIPHIRNNTAMEAVLSSDEARNARVIFCHVDITGASMNDGVSSHAGIPRSAFPSNVSTFSGHFHKPHTV-----GDGF-IRYVGSPYQTCLSESGQSKALLVLDAD-TWAEKEAIPLSIGRR 396
            P  L+ S PT F  AL++PHIR+   M++VL S  + ++  +F H D+TGA MND + S  GI  + FP ++  +SGHFHKPHT+       G  IRYVGSPY+T LSE+GQ KALLVLD+   W   +   LS+G++
Sbjct:  423 PGILIFSVPTKFQNALFVPHIRDTGTMQSVLQSKVSASSSAVFVHADVTGAYMNDSIISTHGIAPAYFPPSIPIYSGHFHKPHTIVKPEAAPGVSIRYVGSPYETTLSEAGQKKALLVLDSSHNWECIDESALSLGKK 560          
BLAST of mRNA_H-paniculata_contig147.2803.1 vs. uniprot
Match: A0A2P6TLS2_CHLSO (ABC transporter (ISS) isoform A n=3 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TLS2_CHLSO)

HSP 1 Score: 122 bits (306), Expect = 1.140e-29
Identity = 59/137 (43.07%), Postives = 83/137 (60.58%), Query Frame = 1
Query:    1 SPQALVLSEPTVFLGALWIPHIRNNTAMEAVLSSDEARNA--RVIFCHVDITGASMNDGVSSHAGIPRSAFPSNVSTFSGHFHKPHTVGDGFIRYVGSPYQTCLSESGQSKALLVLD-ADTWAEKEAIPLSIGRRFF 402
            +P       P +FL ALW+P+ R+  A+EA L++     A  R +F H DI GA MN+   +H G+P   FP+ + T++GH+HKPHTV    I Y+GSPYQ   +E+GQ K LL+LD A  W   + +PL  G R+F
Sbjct:  181 NPAIHAFDGPALFLDALWLPYRRDPAALEAALAAASEGQAPLRAVFAHADIVGAMMNEAYQAHDGLPPELFPAGIPTYTGHYHKPHTVAGTRITYIGSPYQVTRAEAGQRKRLLLLDRAAGWEAVDQLPLDAGPRYF 317          
BLAST of mRNA_H-paniculata_contig147.2803.1 vs. uniprot
Match: A0A7S3M1A4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M1A4_9STRA)

HSP 1 Score: 116 bits (290), Expect = 6.990e-28
Identity = 63/156 (40.38%), Postives = 87/156 (55.77%), Query Frame = 1
Query:    7 QALVLSEPTVFLGALWIPHIRNNTAMEAVLSSD-EARNARVIFCHVDITGASMNDGVSSHAGIPRSAFPSNVSTFSGHFHKPHTVGDG--FIRYVGSPYQTCLSESGQSK------------------ALLVLD---ADTWAEKEAIPLSIGRRFF 402
            Q L++ EP + +GALW+P+ R+   + A L +  ++    +IFCH D+ GA MND + S  G+  ++FP N+  +SGHFHKPHT+  G   +RYVGSPYQT LSE+GQ K                  A  V D    +TW E E     IGR+ F
Sbjct:  112 QILIIDEPAISMGALWVPYRRDLNVLRAALRAGADSPGVSMIFCHADVKGAYMNDNMRSKEGLDIASFPKNIPIYSGHFHKPHTICQGRTTLRYVGSPYQTSLSEAGQEKYFYCVQRGNHGVVAGVEAAASVADYEQPETWKEVERWVCDIGRKIF 267          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig147.2803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KB20_9PHAE3.310e-6379.10ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FQ73_ECTSI8.380e-6379.10DNA double-strand break repair rad50 ATPase n=1 Ta... [more]
A0A836CHZ6_9STRA4.190e-4656.82Metallophos domain-containing protein n=1 Tax=Trib... [more]
B8CBT2_THAPS6.140e-3552.63ABC transporter (Fragment) n=1 Tax=Thalassiosira p... [more]
K0RAD6_THAOC1.590e-3449.26Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A4D9DAR7_9STRA3.730e-3143.54Metallophos domain-containing protein n=2 Tax=Mono... [more]
A0A448ZKB3_9STRA9.380e-3147.79Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S3V904_9STRA2.400e-3047.10Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
A0A2P6TLS2_CHLSO1.140e-2943.07ABC transporter (ISS) isoform A n=3 Tax=Chlorella ... [more]
A0A7S3M1A4_9STRA6.990e-2840.38Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig147contigH-paniculata_contig147:14984..16254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score219.5
Seed ortholog evalue9.1e-55
Seed eggNOG ortholog2880.D7FQ73
Hectar predicted targeting categoryother localisation
EggNOG OGs28INY@1,2QQZZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size402
Cds size402
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig147.2803.1prot_H-paniculata_contig147.2803.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig147 14984..16254 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929169.4345427-CDS-H-paniculata_contig147:14983..150881622929169.4345427-CDS-H-paniculata_contig147:14983..15088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig147 14984..15088 -
1691480758.410128-CDS-H-paniculata_contig147:14983..150881691480758.410128-CDS-H-paniculata_contig147:14983..15088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig147 14984..15088 -
1622929169.4478083-CDS-H-paniculata_contig147:15379..155541622929169.4478083-CDS-H-paniculata_contig147:15379..15554Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig147 15380..15554 -
1691480758.4209337-CDS-H-paniculata_contig147:15379..155541691480758.4209337-CDS-H-paniculata_contig147:15379..15554Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig147 15380..15554 -
1622929169.4655921-CDS-H-paniculata_contig147:16132..162541622929169.4655921-CDS-H-paniculata_contig147:16132..16254Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig147 16133..16254 -
1691480758.430203-CDS-H-paniculata_contig147:16132..162541691480758.430203-CDS-H-paniculata_contig147:16132..16254Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig147 16133..16254 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig147.2803.1

>prot_H-paniculata_contig147.2803.1 ID=prot_H-paniculata_contig147.2803.1|Name=mRNA_H-paniculata_contig147.2803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
SPQALVLSEPTVFLGALWIPHIRNNTAMEAVLSSDEARNARVIFCHVDIT
GASMNDGVSSHAGIPRSAFPSNVSTFSGHFHKPHTVGDGFIRYVGSPYQT
CLSESGQSKALLVLDADTWAEKEAIPLSIGRRFF
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mRNA from alignment at H-paniculata_contig147:14984..16254-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig147.2803.1 ID=mRNA_H-paniculata_contig147.2803.1|Name=mRNA_H-paniculata_contig147.2803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1271bp|location=Sequence derived from alignment at H-paniculata_contig147:14984..16254- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCCCTCAGGCACTGGTACTATCCGAACCAACGGTTTTTCTGGGCGCGCT GTGGATCCCACACATTAGGAATAACACTGCCATGGAGGCAGTGCTGTCCA GTGACGAGGCGCGCAATGCAAGGTGACAATCTAGACCAAAAACAGTGGTC TCCGGGAAGATGTATCCAGGCACGCCCTACAGTCGAGGTTTTTGCCTACT ATAGAGCGCACAATACCGTATGCCGTTCGCAGCACGTGCCTGCCGAGTTG CTTTTCTATGTACTCCCGTGTACTCGTGTACTGCGCTGCGAGGCTGGGAT ATTCTTCTCCATCAAGTGTACTGTACTGTACTGTACGGTATCGTACCACT TTGCCATGTGCTCTCATGCACCTTATATACCCGAGGTGGTGCAAGTCTTG TTGGCGAGACGTACTAGACTGGTGCGGGATATCCATCCTCGTAGCCTTTA TCCCACGCCGTTCAGAATCAGCATATTTAAACGCGCCGTCGATGCTCGCC AGTGCGCAGAGCTCCCCCCCTCCCTTCTCTCCCATGCCCTCTCCCGCTTC TAACGTGCCGTCGCCTGACTTATGTACTAATCGCCTATTTTGTCGTTACC GCCCGTGGTGTCTCCCCTCGATCACCCTCCTTGCCCTTGCGTGTGCTGCG ACGCCCCTATCGCTCGTTTGTGGTTTTGTTTCTTCTATTTTTGTTTTCAG GGTAATATTTTGTCATGTGGACATCACGGGTGCCTCTATGAACGACGGCG TTTCCTCCCACGCGGGCATTCCTCGATCCGCTTTTCCCAGCAACGTCTCG ACCTTCTCGGGGCACTTCCATAAGCCTCACACCGTGGGAGACGGCTTCAT TCGATACGTGGGGTCGCCATACCAGGTCCGGGTTATAACGATAGCACTAG CAGGGGTAAATGAGCAGTTGTTTGTGGTCGGGTGTTGTTTCTTGTTTTTT TGCCACGTGGTTTCTATGGGTAATTTCGGAACTACACCGACGATACGCAA GGCACATGAAATATTCAACCTTGGAGAACGTTTAGACTTCTCCACGACCT TCTAGGCACAGAAAGTATGCTGCTAAAGGACCACGGAAACCCAGGGTTTC GTGACTCAATAGTAACTTAGTCGTCTTTCCCCCCCTTTATTCACTCGCTT TCCGTGGGGGGCACAGACTTGTCTTTCGGAGTCAGGTCAATCGAAGGCGC TGCTGGTGCTCGACGCCGATACGTGGGCGGAGAAGGAAGCAATCCCACTC AGCATCGGCCGGCGCTTTTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig147:14984..16254-

>mRNA_H-paniculata_contig147.2803.1 ID=mRNA_H-paniculata_contig147.2803.1|Name=mRNA_H-paniculata_contig147.2803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig147:14984..16254- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCCCTCAGGCACTGGTACTATCCGAACCAACGGTTTTTCTGGGCGCGCT
GTGGATCCCACACATTAGGAATAACACTGCCATGGAGGCAGTGCTGTCCA
GTGACGAGGCGCGCAATGCAAGTCCCCTCAGGCACTGGTACTATCCGAAC
CAACGGTTTTTCTGGGCGCGCTGTGGATCCCACACATTAGGAATAACACT
GCCATGGAGGCAGTGCTGTCCAGTGACGAGGCGCGCAATGCAAGGGTAAT
ATTTTGTCATGTGGACATCACGGGTGCCTCTATGAACGACGGCGTTTCCT
CCCACGCGGGCATTCCTCGATCCGCTTTTCCCAGCAACGTCTCGACCTTC
TCGGGGCACTTCCATAAGCCTCACACCGTGGGAGACGGCTTCATTCGATA
CGTGGGGTCGCCATACCAGGGTAATATTTTGTCATGTGGACATCACGGGT
GCCTCTATGAACGACGGCGTTTCCTCCCACGCGGGCATTCCTCGATCCGC
TTTTCCCAGCAACGTCTCGACCTTCTCGGGGCACTTCCATAAGCCTCACA
CCGTGGGAGACGGCTTCATTCGATACGTGGGGTCGCCATACCAGACTTGT
CTTTCGGAGTCAGGTCAATCGAAGGCGCTGCTGGTGCTCGACGCCGATAC
GTGGGCGGAGAAGGAAGCAATCCCACTCAGCATCGGCCGGCGCTTTTTTA
CTTGTCTTTCGGAGTCAGGTCAATCGAAGGCGCTGCTGGTGCTCGACGCC
GATACGTGGGCGGAGAAGGAAGCAATCCCACTCAGCATCGGCCGGCGCTT
TTTT
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