mRNA_H-paniculata_contig14694.2801.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14694.2801.1
Unique NamemRNA_H-paniculata_contig14694.2801.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14694.2801.1 vs. uniprot
Match: D8LR49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR49_ECTSI)

HSP 1 Score: 372 bits (954), Expect = 1.770e-114
Identity = 235/283 (83.04%), Postives = 249/283 (87.99%), Query Frame = 1
Query:    1 MQVFGTPLVCRVVPMTGRQLYDKLYRRFHRFLRLKEATTAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFDDGKEVDV------RPCMGTSEDSDCPSSVRATSMWVAAGDVNHWGFRLRLVNSSGTACSRCRWTEGCVGCFIPPNDELCPVRAGDSVGVDWHISVFKEHYDASEAMACLLHSSLALHKDMEARPLSLEKCLDTFTAQEDIKEGYCSRCKEFRNASKKMDIWRLPPILAIHLKRFQYTQYSRRKLRNLVH 831
            ++VFGTPLVCRVVPMTGRQLYDKLYRRFHRFLRLK    +A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                +PCMGT +D DCP +VRATS WVAAG+VN WGFRLRLV S+G ACSRCRWTEGCVGCFI P+D  CPVRAGDSVGVDWHISV KEHYDASEA++CLLHSS+ALHKD+EARPLSLEKCLDTFTAQEDIKEGYCSRCKEFRNASKKMD+WRLPPILAI LKRFQYTQYSRRKLRN VH
Sbjct: 1377 LEVFGTPLVCRVVPMTGRQLYDKLYRRFHRFLRLKAGGVSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVQQPCMGTGDDRDCPQTVRATSAWVAAGEVNRWGFRLRLVESNGYACSRCRWTEGCVGCFIRPDDTPCPVRAGDSVGVDWHISVIKEHYDASEALSCLLHSSIALHKDLEARPLSLEKCLDTFTAQEDIKEGYCSRCKEFRNASKKMDVWRLPPILAIQLKRFQYTQYSRRKLRNNVH 1659          
BLAST of mRNA_H-paniculata_contig14694.2801.1 vs. uniprot
Match: A0A6H5KLB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLB3_9PHAE)

HSP 1 Score: 367 bits (943), Expect = 6.290e-113
Identity = 231/286 (80.77%), Postives = 245/286 (85.66%), Query Frame = 1
Query:    1 MQVFGTPLVCRVVPMTGRQLYDKLYRRFHRFLRLKEATTAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFDDGKEVDV---------RPCMGTSEDSDCPSSVRATSMWVAAGDVNHWGFRLRLVNSSGTACSRCRWTEGCVGCFIPPNDELCPVRAGDSVGVDWHISVFKEHYDASEAMACLLHSSLALHKDMEARPLSLEKCLDTFTAQEDIKEGYCSRCKEFRNASKKMDIWRLPPILAIHLKRFQYTQYSRRKLRNLVH 831
            ++VFGTPLVCRVVPMTGRQLYDKLYRRFHRFLRLK    +    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                    PCMGT +D DCP +VRATS WVAAG+VN WGFRLRLV S+G ACSRCRWTEGCVGCFI P+D+ CPVRAGDSVGVDWHISV KEHYD SEA++CLLHSS+ALHKD+EARPLSLEKCLDTFTAQEDIKEGYCSRCKEFRNASKKMD+WRLPPILAI LKRFQYTQYSRRKLRN VH
Sbjct: 1545 LEVFGTPLVCRVVPMTGRQLYDKLYRRFHRFLRLKAGGVSPASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVQHPCMGTGDDRDCPQTVRATSAWVAAGEVNRWGFRLRLVESNGYACSRCRWTEGCVGCFIRPDDKPCPVRAGDSVGVDWHISVIKEHYDPSEALSCLLHSSIALHKDLEARPLSLEKCLDTFTAQEDIKEGYCSRCKEFRNASKKMDVWRLPPILAIQLKRFQYTQYSRRKLRNNVH 1830          
BLAST of mRNA_H-paniculata_contig14694.2801.1 vs. uniprot
Match: A0A835YVN1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVN1_9STRA)

HSP 1 Score: 231 bits (590), Expect = 1.530e-65
Identity = 129/280 (46.07%), Postives = 157/280 (56.07%), Query Frame = 1
Query:    1 MQVFGTPLVCRVV---PMTGRQLYDKLYRRFHRFLRLKEATTAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFDDGKEVDVRPCMGTSEDSDCPSSVRAT-SMWVAAGDVNHWGFRLRLVNSSGTACSRCRWTEGCVGCFIPPNDELCPVRAGDSVGVDWHISVFKEHYDASEAMACLLHSSLALHKDMEARPLSLEKCLDTFTAQEDIKEGYCSRCKEFRNASKKMDIWRLPPILAIHLKRFQYTQYSRRKLRNLV 828
            +QVFGTPLVC      P TGRQLYD L +RF RF++       A                                                  G  D K +         E SD  + V  T S  +AAG VN WGFRLRLV   G ACSRC W  GC+GCFIPPND    +R GD+V VDWH++V +E YDA++AMAC+ H S+A     E++P+SL++CL+TFTA+E I EGYCSRCKE R  + +M +WRLPP+L I LKRFQYT YSRRKLRNLV
Sbjct: 1434 LQVFGTPLVCTASAASPPTGRQLYDSLRKRFCRFIK-----DPAADAPPRAAAVTSGETTMDVTAVDAHSLTSPPRALHKSRSMNGSIHRLSEQGEADAKAL-------AEESSDNFNRVTLTCSERLAAGPVNQWGFRLRLVTYDGRACSRCPWLSGCLGCFIPPNDSPAGIRDGDTVAVDWHMTVMRERYDAAQAMACVNHPSVAAALRSESQPMSLQRCLETFTAEETIPEGYCSRCKELRETNMRMGLWRLPPVLVIQLKRFQYTAYSRRKLRNLV 1701          
BLAST of mRNA_H-paniculata_contig14694.2801.1 vs. uniprot
Match: A0A2D4BEQ6_PYTIN (USP domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BEQ6_PYTIN)

HSP 1 Score: 157 bits (398), Expect = 4.050e-41
Identity = 71/149 (47.65%), Postives = 98/149 (65.77%), Query Frame = 1
Query:  385 VNHWGFRLRLVNSSGTACSRCRWTEGCVGCFIPPN-DELCPVRAGDSVGVDWHISVFKEHYDASEAMACLLHSSLALHKDMEARPLSLEKCLDTFTAQEDIKEGYCSRCKEFRNASKKMDIWRLPPILAIHLKRFQYTQYSRRKLRNLV 828
            ++ +GF LRLV S G  CSRC W +GC+GC +PP+     P+ A +++ +DW I   K+ YD  +A     H ++A +  ++  PL++ +CLD FTA+E I E YC RCK  R A+K MD+WRLPP+L I LKRF YTQ SRRKL + V
Sbjct:  157 ISRFGFCLRLVTSHGVGCSRCEWLDGCLGCVLPPSPSSRLPLSAEETIAIDWDIRTLKDEYDPIQASKLDTHDAVATNHRLDNMPLNIYRCLDIFTAKEHISEAYCGRCKTHRAATKTMDLWRLPPLLVIQLKRFCYTQTSRRKLHHFV 305          
BLAST of mRNA_H-paniculata_contig14694.2801.1 vs. uniprot
Match: K3WLF0_GLOUD (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLF0_GLOUD)

HSP 1 Score: 159 bits (403), Expect = 1.330e-40
Identity = 80/164 (48.78%), Postives = 106/164 (64.63%), Query Frame = 1
Query:  349 VRATSMWVAAGD---VNHWGFRLRLVNSSGTACSRCRWTEGCVGCFIPPND-ELCPVRAGDSVGVDWHISVFKEHYDASEAMACLLHSSLALHKDMEARPLSLEKCLDTFTAQEDIKEGYCSRCKEFRNASKKMDIWRLPPILAIHLKRFQYTQYSRRKLRNLV 828
            ++A +  +A GD   V  +GF LR+V S GT CSRC W EGC+GC I P+  E   + A +++ +DW I   KE YD  +A      +S+  +K  +  PLS+E C+D FTA+E I+E YC RCK  R A+K MD+WRLPP+L I LKRF YTQ SRRKL +LV
Sbjct:  556 LKADASALALGDHLPVTKFGFCLRMVTSHGTGCSRCEWLEGCLGCLILPSPHEPLQLTAEETIAIDWDIRTLKEEYDPIQASKLDFDNSVQHNKRQDNMPLSIEHCMDMFTAKERIQEAYCGRCKTLRPATKTMDLWRLPPLLVIQLKRFCYTQVSRRKLHHLV 719          
BLAST of mRNA_H-paniculata_contig14694.2801.1 vs. uniprot
Match: W2Q8F7_PHYPN (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2Q8F7_PHYPN)

HSP 1 Score: 159 bits (402), Expect = 2.120e-40
Identity = 77/164 (46.95%), Postives = 106/164 (64.63%), Query Frame = 1
Query:  349 VRATSMWVAAGD---VNHWGFRLRLVNSSGTACSRCRWTEGCVGCFIPPNDE-LCPVRAGDSVGVDWHISVFKEHYDASEAMACLLHSSLALHKDMEARPLSLEKCLDTFTAQEDIKEGYCSRCKEFRNASKKMDIWRLPPILAIHLKRFQYTQYSRRKLRNLV 828
            VR  +  +A G+   +  +GF LRLV S G  CSRC W +GC+GC + P+ E + P+ A ++V +DW I   KE YD  +A      +S+  H+  + +PL+L  C++ FTA+E I E YC  CK  R A+KKMD+WRLPP+L IHLKRF +TQ SRRKL +LV
Sbjct: 1314 VRTDTSSLALGEHLTLTKFGFCLRLVTSHGIGCSRCEWLDGCLGCLLLPSSETVIPLAAEETVAIDWDIRTLKEEYDPIQASKMDFDASVQQHQRQDNQPLNLAHCMEIFTAKETIPEAYCGHCKTLRPATKKMDLWRLPPLLVIHLKRFCFTQVSRRKLHHLV 1477          
BLAST of mRNA_H-paniculata_contig14694.2801.1 vs. uniprot
Match: A0A418CX72_9STRA (USP domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418CX72_9STRA)

HSP 1 Score: 154 bits (388), Expect = 2.760e-40
Identity = 80/171 (46.78%), Postives = 105/171 (61.40%), Query Frame = 1
Query:  340 PSSVRATSM-WVAAG------DVNHWGFRLRLVNSSGTACSRCRWTEGCVGCFIPPN-DELCPVRAGDSVGVDWHISVFKEHYDASEAMACLLHSSLALHKDMEARPLSLEKCLDTFTAQEDIKEGYCSRCKEFRNASKKMDIWRLPPILAIHLKRFQYTQYSRRKLRNLV 828
            PS+ RA+ +  VA G      ++  +GF LRLV   G ACSRC W  GC GC +  + D L  V   +++ +DW I    E YDA+EA    +H+S      ++A  LSL+ CL  FTA E + E YCSRCK    A+KKMD+WR+PP+L I LKRFQYT  SR+KLR+LV
Sbjct:  117 PSASRASDVATVALGTHLVWVELTRFGFCLRLVTMDGMACSRCPWLSGCRGCLVSSHPDALLQVCGRETIAIDWDIQTMAEDYDATEASKVQVHASFEKQAKVQAAVLSLQSCLKDFTASEPLDEAYCSRCKALTPAAKKMDLWRVPPLLVIQLKRFQYTATSRKKLRHLV 287          
BLAST of mRNA_H-paniculata_contig14694.2801.1 vs. uniprot
Match: F0VYX5_9STRA (Ubiquitinspecific protease putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VYX5_9STRA)

HSP 1 Score: 159 bits (401), Expect = 2.910e-40
Identity = 78/175 (44.57%), Postives = 109/175 (62.29%), Query Frame = 1
Query:  331 SDCPSSVRATSMW------VAAGD---VNHWGFRLRLVNSSGTACSRCRWTEGCVGCFIPPNDELCPVRAGDSVGVDWHISVFKEHYDASEAMACLLHSSLALHKDMEARPLSLEKCLDTFTAQEDIKEGYCSRCKEFRNASKKMDIWRLPPILAIHLKRFQYTQYSRRKLRNLV 828
            S+ P++ R   M+      +A G    +  +GF LR+V S+G +CSRC W + C+GC I P+ +   V A +++ +DW  +  KE YD  EA   +  +S+  ++  +  PL+L++CL+ FTAQE I E YC RCK  R A+K MD WRLPPIL IHLKRF YTQ SRRKL + V
Sbjct: 1404 SEFPTTTRNEEMFRSDVRTIALGSQLRITKFGFCLRMVTSAGHSCSRCAWLDACLGCLIVPSQDRISVTAEETIAMDWDTASLKEEYDPLEASTMITDASIEHNRQKDQGPLTLDQCLNIFTAQEHINEAYCGRCKALRPANKTMDFWRLPPILVIHLKRFCYTQVSRRKLYHFV 1578          
BLAST of mRNA_H-paniculata_contig14694.2801.1 vs. uniprot
Match: A0A484E318_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E318_BRELC)

HSP 1 Score: 158 bits (400), Expect = 3.910e-40
Identity = 72/146 (49.32%), Postives = 102/146 (69.86%), Query Frame = 1
Query:  394 WGFRLRLVNSSGTACSRCRWTEGCVGCFIPPNDE-LCPVRAGDSVGVDWHISVFKEHYDASEAMACLLHSSLALHKDMEARPLSLEKCLDTFTAQEDIKEGYCSRCKEFRNASKKMDIWRLPPILAIHLKRFQYTQYSRRKLRNLV 828
            +GF LRLV S+G  CSRC W +GC+GC + P+ + + P+ A ++V +DW +   KE YD+ +A    L +S+  H  ++ +PL+L  C++ FTA+E I E YC RCK  R A+KKMD+WRLPP+L IHLKRF +TQ +RRKL +LV
Sbjct: 1324 FGFCLRLVTSNGIGCSRCEWLDGCLGCVLLPSYQTMIPLAAEETVAIDWDMRTLKEEYDSIQASKLDLDASVQEHNRLDNQPLNLSHCMEIFTAKETIPEAYCGRCKTLRPATKKMDLWRLPPLLVIHLKRFCFTQVARRKLHHLV 1469          
BLAST of mRNA_H-paniculata_contig14694.2801.1 vs. uniprot
Match: A0A833T2V7_PHYIN (Ubiquitin carboxyl-terminal hydrolase domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833T2V7_PHYIN)

HSP 1 Score: 158 bits (399), Expect = 5.320e-40
Identity = 73/149 (48.99%), Postives = 99/149 (66.44%), Query Frame = 1
Query:  385 VNHWGFRLRLVNSSGTACSRCRWTEGCVGCFIPPNDE-LCPVRAGDSVGVDWHISVFKEHYDASEAMACLLHSSLALHKDMEARPLSLEKCLDTFTAQEDIKEGYCSRCKEFRNASKKMDIWRLPPILAIHLKRFQYTQYSRRKLRNLV 828
            +  +GF LRLV S G  CSRC W +GC+GC + P+ E + P+ A ++V +DW I   KE YD  +A      +S+  H+  + +PL+L  C++ FTA+E I E YC  CK  R A+KKMD+WRLPP+L IHLKRF +TQ SRRKL +LV
Sbjct: 1331 LTKFGFCLRLVTSHGIGCSRCEWLDGCLGCLLLPSSETVIPLAAEETVAIDWDIRTLKEEYDPIQASKMDFDASVQQHQRQDNQPLNLAHCMEIFTAKETIPEAYCGHCKTLRPATKKMDLWRLPPLLVIHLKRFCFTQVSRRKLHHLV 1479          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14694.2801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR49_ECTSI1.770e-11483.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLB3_9PHAE6.290e-11380.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YVN1_9STRA1.530e-6546.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2D4BEQ6_PYTIN4.050e-4147.65USP domain-containing protein n=1 Tax=Pythium insi... [more]
K3WLF0_GLOUD1.330e-4048.78Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Glob... [more]
W2Q8F7_PHYPN2.120e-4046.95Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A418CX72_9STRA2.760e-4046.78USP domain-containing protein (Fragment) n=1 Tax=A... [more]
F0VYX5_9STRA2.910e-4044.57Ubiquitinspecific protease putative n=1 Tax=Albugo... [more]
A0A484E318_BRELC3.910e-4049.32Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A833T2V7_PHYIN5.320e-4048.99Ubiquitin carboxyl-terminal hydrolase domain-conta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14694contigH-paniculata_contig14694:2351..5745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score373.6
Seed ortholog evalue7.8e-101
Seed eggNOG ortholog2880.D8LR49
KEGG koko:K11837
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5560@1,KOG1870@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons5
Model size831
Cds size831
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14694.2801.1prot_H-paniculata_contig14694.2801.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14694 2351..5745 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929169.0150132-CDS-H-paniculata_contig14694:2350..25741622929169.0150132-CDS-H-paniculata_contig14694:2350..2574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14694 2351..2574 +
1691480758.2425878-CDS-H-paniculata_contig14694:2350..25741691480758.2425878-CDS-H-paniculata_contig14694:2350..2574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14694 2351..2574 +
1622929169.0307727-CDS-H-paniculata_contig14694:2643..28231622929169.0307727-CDS-H-paniculata_contig14694:2643..2823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14694 2644..2823 +
1691480758.2673671-CDS-H-paniculata_contig14694:2643..28231691480758.2673671-CDS-H-paniculata_contig14694:2643..2823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14694 2644..2823 +
1622929169.0461788-CDS-H-paniculata_contig14694:3089..32401622929169.0461788-CDS-H-paniculata_contig14694:3089..3240Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14694 3090..3240 +
1691480758.2757294-CDS-H-paniculata_contig14694:3089..32401691480758.2757294-CDS-H-paniculata_contig14694:3089..3240Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14694 3090..3240 +
1622929169.0649743-CDS-H-paniculata_contig14694:4133..42681622929169.0649743-CDS-H-paniculata_contig14694:4133..4268Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14694 4134..4268 +
1691480758.2838085-CDS-H-paniculata_contig14694:4133..42681691480758.2838085-CDS-H-paniculata_contig14694:4133..4268Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14694 4134..4268 +
1622929169.0801666-CDS-H-paniculata_contig14694:5604..57451622929169.0801666-CDS-H-paniculata_contig14694:5604..5745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14694 5605..5745 +
1691480758.2917361-CDS-H-paniculata_contig14694:5604..57451691480758.2917361-CDS-H-paniculata_contig14694:5604..5745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14694 5605..5745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14694.2801.1

>prot_H-paniculata_contig14694.2801.1 ID=prot_H-paniculata_contig14694.2801.1|Name=mRNA_H-paniculata_contig14694.2801.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=277bp
MQVFGTPLVCRVVPMTGRQLYDKLYRRFHRFLRLKEATTAAGAGGGARVG
GGGGVGVGLASTATTTPPPPPPPSPDAWAGGAAGAAGAGAGGFDDGKEVD
VRPCMGTSEDSDCPSSVRATSMWVAAGDVNHWGFRLRLVNSSGTACSRCR
WTEGCVGCFIPPNDELCPVRAGDSVGVDWHISVFKEHYDASEAMACLLHS
SLALHKDMEARPLSLEKCLDTFTAQEDIKEGYCSRCKEFRNASKKMDIWR
LPPILAIHLKRFQYTQYSRRKLRNLVH
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mRNA from alignment at H-paniculata_contig14694:2351..5745+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14694.2801.1 ID=mRNA_H-paniculata_contig14694.2801.1|Name=mRNA_H-paniculata_contig14694.2801.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3395bp|location=Sequence derived from alignment at H-paniculata_contig14694:2351..5745+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGTATTTGGCACTCCATTAGTATGTAGAGTGGTCCCGATGACGGG GCGGCAACTATACGACAAGCTGTATCGACGATTCCATCGTTTTCTCAGGC TCAAGGAAGCCACCACCGCCGCCGGTGCTGGCGGAGGTGCCCGTGTCGGG GGCGGCGGTGGTGTGGGGGTGGGCTTGGCGTCAACAGCAACAACAACGCC ACCGCCACCACCACCACCATCGCCGTCGGCTGGCGCCCCCCCAGTAAGTT CCACTGCCACCATGCCTTCGCGAGGACGATCGGGGTTTTCTAGTGATGCG TGGGCGGGTGGTGCTGCTGGTGCTGCTGGTGCTGGTGCTGGGGGATTTGA TGATGGTAAGGAGGTCGATGTGCGGCCGTGCATGGGCACGAGCGAGGACA GCGATTGTCCGTCGTCGGTGCGGGCGACATCGATGTGGGTTGCGGCGGGC GACGTGAATCACTGGGGATTCAGGTGAGACAAGAAACAGCGACGAGAGAC GGAGACAACGGGTGAAAAAAACTGTTCGTGTTGTGTTTATGAAAAAGGTA TTCCCAAGTTGTTGGCGATGCTGTCTGTCCTGTTTTGCTGGAGTTTGCCC CTGGCGAAGGGTCGTACATGTTGATGTTACTGGTATGTTGGAATTGACGC CCCTCCTTGAGTTAATGACCGACACCACCCTCCCCTCCCCCACCTCCATC TCCAACTTGCCTCCCCTCCCCACTTGAACACCGATGAAGGCTGCGGCTGG TAAACAGTAGCGGGACGGCCTGTTCTCGATGTAGATGGACCGAGGGCTGC GTGGGGTGCTTCATCCCGCCTAATGATGAGCTTTGTCCTGTGAGGGCCGG CGACTCCGTGGGCGTGGACTGGCACATCAGCGTATTTAAAGTACGTGCTG CGCGCGCGGTCCGAGCCTTGCACATGAGAAAGGATCATCGTTATTTCTCT TGTTGCTGTTGCTGTTGTTGTCATTAAAGGGAAGGGCAGCACGCCAGATG ATGTAGTAGCGCGGGCAGGAGGCTAGCCAGTCGGTCCGGTCCGTCAGTCG GACTGAATTGAGGTGGATCGTTCGCATTTGTTTTTTGGGTTGTTGTGCAT CAAAAGCGCAAGAACCACAGCGAAATCGATAATCTTGTGGTCAGCGCCTC TAAACAATCACGCGGAAATTTCCGACGCAGCTGGACTTTTTTGTTTGTTT CCTAGTTCAATATTTTGGTAACTAAAAAAGAGGACGTGTGCGATAAGTAA AAGAGAGGTAAACACCTGAAAAAAATAGGAAAATATGGGCTAGACTCCCC TTACGAGCAAGGTGATAAGTAGTTCTAGAGGCATGGATGTGGGTGGGTGG CTCCATGGATAGTCTCGTCTTCCCGCACAAAACACCGCCGTAAAAACGCC AAAAAAACGTTTTTTTTCGACGAGCAAGATTTCGACGCCCGGGAGGCATG GGGATTAGACATGGATTATCTACGTCCCTTGGTTGTATGTGGAGTAGGTA GGCCCATTCAACCCCCCCCCCCCCCCCTCCCCATGCCCGGGAAGCCAAGG GGGGGGGGGGTATCAAGTATCTGTACTATACCCTTGTGTCAGCGGATATT GGGGGGACTTGAAACGGCCCAGAGCTTAAAGGAGGCTCACCTGTTAAACT TGTTTTGATAAAACCTCGGAGATGCATGTGCTGATATGTGGTGAGAAAGC TTTTTTTGGATTCGAGCGTTAATTCTTGGCATGTGGTGCTGCTGAGCTGT GCTGTACTCTTCTGTACTCGTTGCCCTCTACAGGAGCATTACGACGCGAG CGAGGCGATGGCGTGTCTGCTGCACAGTAGCCTCGCCCTTCATAAGGACA TGGAGGCGAGGCCTCTCAGTCTGGAGAAATGCTTGGATACCTTCACGGCA CAGGAAGACATCAAAGAGGTGATTTGATTATATATTTCGCTACCATCGTG TGCATATATATATATATATATATATATATATATTGTGTCAAAGTTATTGC TGTTATTGTCAAGTGTTCACCCCCCTAGGCATTTACGAATACTTGAAGTA TGCGCCCCGACGCCATGTACGACTACTCCGAATCCTAGTGAAACGAATCA AAAGGAGAGTTTAAAACGTTTTGTATGTGCCCGAACATTCTGAAAACTCG GGCGAATAACTAGGAAAAACAAATGGGAATGTTCCCAGAGTATTTGCGAT CATGAATATATATATATATATATATATTCAAGTATTCGCCTGAGTTTCAG GATGTACGGGCAGGGTAGAATGAAGGGTTTAACCCCTATGTCAGTTGTTT TCCTGCCACTCGCTGCAGTCGTAAATAGATGGTCCAGGGCACATCATATG TAACGAATACCAAATACATTCAACGTTTTCGTCTGAACGGTGCGACGCGC TCGTGTTCGTCCGCGGAGTGGAAATATTTAGGAGTTTTGTGTACTGTGCG GGCTGAATAAAAGGGCGTACGTATAGTTCGTTCTGTTCCATAATTCAGTA TTTTTGTACATGGGCTATTTTTCGATTTGTCGTTCGCTTGTGATTTGTCT TGGTTTACTGTTTTTGTTAGCCTTTTCTGCTTTTTTTTTTTTTTATGTTT TTAGGGCTCTTTTTAATCGTTTTTTTTTTGCACATTTTGTCATGATTATA CCATTGCAGTTTTGCCGGATGGCCATTTAAACTGCACCCACGGTCTGAGG AATTGGGCTAATGTGTGAACAATAATAATGGTGGTAGTGGAGTATGGCCA CGGCGATGCCCGTGCAGTATGTGTGGTTGTCCTCGACCTACGGGTTTGCT GCTACTGCGCTCGCCACGAAGATTTGATTTTTAGAAGTTACTTGAGTATA GAATTGGACAACTGTTCTAAAATAATGTGGCCTTACCTATTTGATTATTT AGTGGTATTTTATCCGTGATTTCGTGTTCTTTTAGTATTTGGGATTAAAT CATGGCGTCCGATTTGTGAAGATTGGATTTGTCCTCTGACGACAATTTTG GGAACTATCCCGTTCGTTTTTTCTTTTTTCTTTTTTCTTTTTTTTCATAA TTTGTGAACATATTTATAATGATCGTATCGTATATGCCCGGCTACAGCTC TGATTCCGCCATAATGTTTGTTCTTGCCCACGTTTCCTTTTTATTTATTT TTTTGTGTTTGTGGCGCGTGTGTGCGTCTGGTGCTACTCCTGCTGCCCTT TCTTTGCTTCCAACTCACTCCTTTTTATGCACATGTACGTATATCTACAT GTAGGGCTACTGCTCTCGCTGCAAGGAATTCCGAAATGCGTCGAAGAAGA TGGACATCTGGCGCTTGCCACCGATCCTAGCGATACATCTTAAGCGCTTC CAGTACACCCAGTACAGCAGGCGAAAGCTCAGGAACCTTGTCCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig14694:2351..5745+

>mRNA_H-paniculata_contig14694.2801.1 ID=mRNA_H-paniculata_contig14694.2801.1|Name=mRNA_H-paniculata_contig14694.2801.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1662bp|location=Sequence derived from alignment at H-paniculata_contig14694:2351..5745+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGTATTTGGCACTCCATTAGTATGTAGAGTGGTCCCGATGACGGG
GCGGCAACTATACGACAAGCTGTATCGACGATTCCATCGTTTTCTCAGGC
TCAAGGAAGCCACCACCGCCGCCGGTGCTGGCGGAGGTGCCCGTGTCGGG
GGCGGCGGTGGTGTGGGGGTGGGCTTGGCGTCAACAGCAACAACAACGCC
ACCGCCACCACCACCACCATCGCCATGCAGGTATTTGGCACTCCATTAGT
ATGTAGAGTGGTCCCGATGACGGGGCGGCAACTATACGACAAGCTGTATC
GACGATTCCATCGTTTTCTCAGGCTCAAGGAAGCCACCACCGCCGCCGGT
GCTGGCGGAGGTGCCCGTGTCGGGGGCGGCGGTGGTGTGGGGGTGGGCTT
GGCGTCAACAGCAACAACAACGCCACCGCCACCACCACCACCATCGCCTG
ATGCGTGGGCGGGTGGTGCTGCTGGTGCTGCTGGTGCTGGTGCTGGGGGA
TTTGATGATGGTAAGGAGGTCGATGTGCGGCCGTGCATGGGCACGAGCGA
GGACAGCGATTGTCCGTCGTCGGTGCGGGCGACATCGATGTGGGTTGCGG
CGGGCGACGTGAATCACTGGGGATTCAGTGATGCGTGGGCGGGTGGTGCT
GCTGGTGCTGCTGGTGCTGGTGCTGGGGGATTTGATGATGGTAAGGAGGT
CGATGTGCGGCCGTGCATGGGCACGAGCGAGGACAGCGATTGTCCGTCGT
CGGTGCGGGCGACATCGATGTGGGTTGCGGCGGGCGACGTGAATCACTGG
GGATTCAGGCTGCGGCTGGTAAACAGTAGCGGGACGGCCTGTTCTCGATG
TAGATGGACCGAGGGCTGCGTGGGGTGCTTCATCCCGCCTAATGATGAGC
TTTGTCCTGTGAGGGCCGGCGACTCCGTGGGCGTGGACTGGCACATCAGC
GTATTTAAAGCTGCGGCTGGTAAACAGTAGCGGGACGGCCTGTTCTCGAT
GTAGATGGACCGAGGGCTGCGTGGGGTGCTTCATCCCGCCTAATGATGAG
CTTTGTCCTGTGAGGGCCGGCGACTCCGTGGGCGTGGACTGGCACATCAG
CGTATTTAAAGAGCATTACGACGCGAGCGAGGCGATGGCGTGTCTGCTGC
ACAGTAGCCTCGCCCTTCATAAGGACATGGAGGCGAGGCCTCTCAGTCTG
GAGAAATGCTTGGATACCTTCACGGCACAGGAAGACATCAAAGAGGAGCA
TTACGACGCGAGCGAGGCGATGGCGTGTCTGCTGCACAGTAGCCTCGCCC
TTCATAAGGACATGGAGGCGAGGCCTCTCAGTCTGGAGAAATGCTTGGAT
ACCTTCACGGCACAGGAAGACATCAAAGAGGGCTACTGCTCTCGCTGCAA
GGAATTCCGAAATGCGTCGAAGAAGATGGACATCTGGCGCTTGCCACCGA
TCCTAGCGATACATCTTAAGCGCTTCCAGTACACCCAGTACAGCAGGCGA
AAGCTCAGGAACCTTGTCCACGGCTACTGCTCTCGCTGCAAGGAATTCCG
AAATGCGTCGAAGAAGATGGACATCTGGCGCTTGCCACCGATCCTAGCGA
TACATCTTAAGCGCTTCCAGTACACCCAGTACAGCAGGCGAAAGCTCAGG
AACCTTGTCCAC
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