mRNA_H-paniculata_contig14598.2754.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig14598.2754.1 vs. uniprot
Match: A0A6H5L7X6_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7X6_9PHAE) HSP 1 Score: 120 bits (301), Expect = 6.910e-28 Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 2 Query: 782 TPNCYKCFINDMLKVVEAVGQRVIVGESEVSGLLFVDDFVGMSDNPERPQKQIDTAIEFARKRRLAANVKKCAVMVCNNSKIDEVDLKWKWRDEELPRVDSTRILALSFRR 1114 +P +K +IND+++ VEAV Q V VG VSGL+F DDFVG+S+ PE Q+QID A+ + RK RL+ANV KCAV+VCN K + V+ KWKW +EELP VD L + + Sbjct: 48 SPTLFKIYINDLIRAVEAVRQGVQVGGKSVSGLMFTDDFVGVSETPEGLQEQIDAAVGYTRKWRLSANVGKCAVVVCNEDKKNPVEFKWKWGEEELPVVDRYTYLGVEISK 158
BLAST of mRNA_H-paniculata_contig14598.2754.1 vs. uniprot
Match: A0A6H5KLS2_9PHAE (GT28 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLS2_9PHAE) HSP 1 Score: 121 bits (304), Expect = 3.790e-27 Identity = 63/124 (50.81%), Postives = 85/124 (68.55%), Query Frame = 2 Query: 782 TPNCYKCFINDMLKVVEAVGQRVIVGESEVSGLLFVDDFVGMSDNPERPQKQIDTAIEFARKRRLAANVKKCAVMVCNNSKIDEVDLKWKWRDEELPRVDSTRILALSFRRTVCGM*KKSKSPE 1153 +P +K +IND+++ VEAV Q V VG VSGL+F DDFVG+S+ PE Q+QID A+ + RK RL+ANV KCAV+VCN K + V+ KWKW +EELP VD + + L F G+ S++PE Sbjct: 2 SPTLFKIYINDLIRAVEAVRQGVQVGGKSVSGLMFADDFVGVSETPEGLQEQIDAAVGYTRKWRLSANVGKCAVVVCNEDKKNPVEFKWKWGEEELPVVDRS-VSGLMFADDFVGV---SETPE 121
BLAST of mRNA_H-paniculata_contig14598.2754.1 vs. uniprot
Match: A0A6H5JAQ5_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ5_9PHAE) HSP 1 Score: 114 bits (285), Expect = 4.420e-26 Identity = 64/128 (50.00%), Postives = 83/128 (64.84%), Query Frame = 2 Query: 782 TPNCYKCFINDMLKVVEAVGQRVIVGESE--VSGLLFVDDFVGMSDNPERPQKQIDTAIEFARKRRLAANVKKCAVMVCNNSKIDEVDLKWKWRDEELPRVDSTRILALSFRRTVCGM*KKSKSPEKG 1159 +P ++ FIND+L+VVEAV + V VG++E VSG+LF DDFVGMSD PE Q QID A +F K RL+ANV+K AVMVCN +K + V+ +WKW EE+ VD L + + SK EKG Sbjct: 33 SPTLFQVFINDLLEVVEAVRKGVKVGDTETSVSGMLFADDFVGMSDTPEGLQLQIDAAKKFTDKWRLSANVQKSAVMVCNENKEEPVEHRWKWGIEEIAVVDQYTYLGVEIAKDCSWNAHMSKVAEKG 160
BLAST of mRNA_H-paniculata_contig14598.2754.1 vs. uniprot
Match: A0A6H5KVH1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVH1_9PHAE) HSP 1 Score: 113 bits (282), Expect = 8.740e-26 Identity = 63/128 (49.22%), Postives = 82/128 (64.06%), Query Frame = 2 Query: 782 TPNCYKCFINDMLKVVEAVGQRVIVGESE--VSGLLFVDDFVGMSDNPERPQKQIDTAIEFARKRRLAANVKKCAVMVCNNSKIDEVDLKWKWRDEELPRVDSTRILALSFRRTVCGM*KKSKSPEKG 1159 +P ++ IND+L++VEAV + V VG++E VSG+LF DDFVGMSD PE Q QID A +F K RL+ANVKK AVMVCN +K + V+ +WKW EE+ VD L + + SK EKG Sbjct: 11 SPTLFQVCINDLLEIVEAVRKGVKVGDTETSVSGMLFADDFVGMSDTPEGLQLQIDAAKKFTDKWRLSANVKKSAVMVCNENKEEPVEHRWKWGIEEIAVVDQYTYLGVEIAKDCSWNAHMSKGAEKG 138
BLAST of mRNA_H-paniculata_contig14598.2754.1 vs. uniprot
Match: A0A6H5KVE0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVE0_9PHAE) HSP 1 Score: 120 bits (301), Expect = 3.550e-25 Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 2 Query: 782 TPNCYKCFINDMLKVVEAVGQRVIVGESEVSGLLFVDDFVGMSDNPERPQKQIDTAIEFARKRRLAANVKKCAVMVCNNSKIDEVDLKWKWRDEELPRVDSTRILALSFRR 1114 +P +K +IND+++ VEAV Q V VG VSGL+F DDFVG+S+ PE Q+QID A+ + RK RL+ANV KCAV+VCN K + V+ KWKW +EELP VD L + + Sbjct: 249 SPTIFKIYINDLIRAVEAVRQGVQVGGKSVSGLMFADDFVGVSETPEGLQEQIDAAVGYTRKWRLSANVGKCAVVVCNEDKKNPVEFKWKWGEEELPVVDRYTYLGVEISK 359
BLAST of mRNA_H-paniculata_contig14598.2754.1 vs. uniprot
Match: A0A6H5K486_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K486_9PHAE) HSP 1 Score: 117 bits (293), Expect = 4.350e-25 Identity = 65/128 (50.78%), Postives = 83/128 (64.84%), Query Frame = 2 Query: 782 TPNCYKCFINDMLKVVEAVGQRVIVGESE--VSGLLFVDDFVGMSDNPERPQKQIDTAIEFARKRRLAANVKKCAVMVCNNSKIDEVDLKWKWRDEELPRVDSTRILALSFRRTVCGM*KKSKSPEKG 1159 +P ++ FIND+L+VVEAV + V VG++E VSG+LF DDF+GMSD PE Q QID A F KRRL+ANVKK AVMVCN +K + V+ +WKW EE+ VD L + + SK EKG Sbjct: 226 SPTLFQVFINDLLEVVEAVRKGVKVGDTETSVSGMLFADDFIGMSDAPEGLQLQIDAAKRFTDKRRLSANVKKSAVMVCNENKEEPVEHRWKWGIEEIAVVDQYTYLGVEIAKDCSWNAHMSKVAEKG 353
BLAST of mRNA_H-paniculata_contig14598.2754.1 vs. uniprot
Match: A0A6H5KV10_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV10_9PHAE) HSP 1 Score: 120 bits (301), Expect = 6.810e-25 Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 2 Query: 782 TPNCYKCFINDMLKVVEAVGQRVIVGESEVSGLLFVDDFVGMSDNPERPQKQIDTAIEFARKRRLAANVKKCAVMVCNNSKIDEVDLKWKWRDEELPRVDSTRILALSFRR 1114 +P +K +IND+++ VEAV Q V VG VSGL+F DDFVG+S+ PE Q+QID A+ + RK RL+ANV KCAV+VCN K + V+ KWKW +EELP VD L + + Sbjct: 818 SPTLFKIYINDLIRAVEAVRQGVQVGGKSVSGLMFADDFVGVSETPEGLQEQIDAAVGYTRKWRLSANVGKCAVVVCNEDKKNTVEFKWKWGEEELPVVDRYTYLGVEISK 928
BLAST of mRNA_H-paniculata_contig14598.2754.1 vs. uniprot
Match: A0A6H5KTB3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTB3_9PHAE) HSP 1 Score: 120 bits (301), Expect = 7.070e-25 Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 2 Query: 782 TPNCYKCFINDMLKVVEAVGQRVIVGESEVSGLLFVDDFVGMSDNPERPQKQIDTAIEFARKRRLAANVKKCAVMVCNNSKIDEVDLKWKWRDEELPRVDSTRILALSFRR 1114 +P +K +IND+++ VEAV Q V VG VSGL+F DDFVG+S+ PE Q+QID A+ + RK RL+ANV KCAV+VCN K + V+ KWKW +EELP VD L + + Sbjct: 317 SPTLFKIYINDLIRAVEAVRQGVQVGGKSVSGLMFADDFVGVSETPEGLQEQIDAAVGYTRKWRLSANVGKCAVVVCNEDKKNPVEFKWKWGEEELPVVDRYTYLGVEISK 427
BLAST of mRNA_H-paniculata_contig14598.2754.1 vs. uniprot
Match: A0A6H5KF79_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF79_9PHAE) HSP 1 Score: 118 bits (296), Expect = 7.320e-25 Identity = 57/111 (51.35%), Postives = 76/111 (68.47%), Query Frame = 2 Query: 782 TPNCYKCFINDMLKVVEAVGQRVIVGESEVSGLLFVDDFVGMSDNPERPQKQIDTAIEFARKRRLAANVKKCAVMVCNNSKIDEVDLKWKWRDEELPRVDSTRILALSFRR 1114 +P +K +IND+++ VEAV Q V VG VSGL+F DDFVG+S+ PE Q+QID A+ + RK RL+ NV KCAV+VCN K + V+ KWKW +EELP VD L + + Sbjct: 32 SPTLFKIYINDLIRAVEAVRQGVQVGGKSVSGLMFADDFVGVSETPEGLQEQIDAAVGYIRKWRLSVNVGKCAVVVCNEDKKNPVEFKWKWGEEELPVVDRYTYLGVEISK 142
BLAST of mRNA_H-paniculata_contig14598.2754.1 vs. uniprot
Match: A0A6H5KD64_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD64_9PHAE) HSP 1 Score: 119 bits (299), Expect = 7.420e-25 Identity = 58/111 (52.25%), Postives = 76/111 (68.47%), Query Frame = 2 Query: 782 TPNCYKCFINDMLKVVEAVGQRVIVGESEVSGLLFVDDFVGMSDNPERPQKQIDTAIEFARKRRLAANVKKCAVMVCNNSKIDEVDLKWKWRDEELPRVDSTRILALSFRR 1114 +P +K +IND++ VEAV Q V VG VSGL+F DDFVG+S+ PE Q+QID A+ + RK RL+ANV KCAV+VCN K + V+ KWKW +EELP VD L + + Sbjct: 303 SPTLFKIYINDLISAVEAVRQGVQVGGKSVSGLMFADDFVGVSETPEGLQEQIDAAVGYTRKWRLSANVGKCAVVVCNEDKKNPVEFKWKWGEEELPVVDRYTYLGVEISK 413 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14598.2754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14598.2754.1 >prot_H-paniculata_contig14598.2754.1 ID=prot_H-paniculata_contig14598.2754.1|Name=mRNA_H-paniculata_contig14598.2754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp MLKVVEAVGQRVIVGESEVSGLLFVDDFVGMSDNPERPQKQIDTAIEFARback to top mRNA from alignment at H-paniculata_contig14598:4912..6469+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig14598.2754.1 ID=mRNA_H-paniculata_contig14598.2754.1|Name=mRNA_H-paniculata_contig14598.2754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1558bp|location=Sequence derived from alignment at H-paniculata_contig14598:4912..6469+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig14598:4912..6469+ >mRNA_H-paniculata_contig14598.2754.1 ID=mRNA_H-paniculata_contig14598.2754.1|Name=mRNA_H-paniculata_contig14598.2754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig14598:4912..6469+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |