mRNA_H-paniculata_contig14509.2703.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14509.2703.1
Unique NamemRNA_H-paniculata_contig14509.2703.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14509.2703.1 vs. uniprot
Match: A0A6G0WP62_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WP62_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.000e-6
Identity = 31/88 (35.23%), Postives = 52/88 (59.09%), Query Frame = 1 
Query:    1 RMRPYADASLIVGKDIQAVFAAAQQQGEFQISHILDIGESPDKKGEYVVLVEWVGLGAEESSWEPLAVIHEDVPQYLRRKLKKMRLDA 264
            R++ YA++ L V  D+    A   +   F +  +L +  + D  G + +LV+W+GL  EESSWEP   ++ED+P  LRR++K  + +A
Sbjct: 1203 RLKMYAESGLEVTDDLVQHIAYGDEG--FYVEDLLKVRCNDD--GNFELLVKWMGLDREESSWEPAIQLYEDIPVILRRRIKSHQSEA 1286
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BLAST of mRNA_H-paniculata_contig14509.2703.1 vs. uniprot
Match: A0A024TQN1_9STRA (Chromo domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TQN1_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 9.370e-5
Identity = 24/53 (45.28%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:   79 GEFQISHILDIGESPDKKGEYVVLVEWVGLGAEESSWEPLAVIHEDVPQYLRR 237
            G F +  + ++  + +  G Y VLV+W+GL AEESSWEP A + ED+P  LR+
Sbjct:   43 GGFHVERLEEVRVAAN--GRYEVLVKWLGLDAEESSWEPAANLLEDIPVALRK 93
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14509.2703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6G0WP62_9STRA2.000e-635.23Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024TQN1_9STRA9.370e-545.28Chromo domain-containing protein n=1 Tax=Aphanomyc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14509contigH-paniculata_contig14509:448..756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size306
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929155.6072197-UTR-H-paniculata_contig14509:447..4501622929155.6072197-UTR-H-paniculata_contig14509:447..450Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14509 448..450 +
1691480752.1682036-UTR-H-paniculata_contig14509:447..4501691480752.1682036-UTR-H-paniculata_contig14509:447..450Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14509 448..450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929155.6291332-CDS-H-paniculata_contig14509:450..7561622929155.6291332-CDS-H-paniculata_contig14509:450..756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14509 451..756 +
1691480752.1784286-CDS-H-paniculata_contig14509:450..7561691480752.1784286-CDS-H-paniculata_contig14509:450..756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14509 451..756 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14509.2703.1prot_H-paniculata_contig14509.2703.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14509 451..756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14509.2703.1

>prot_H-paniculata_contig14509.2703.1 ID=prot_H-paniculata_contig14509.2703.1|Name=mRNA_H-paniculata_contig14509.2703.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MRPYADASLIVGKDIQAVFAAAQQQGEFQISHILDIGESPDKKGEYVVLV
EWVGLGAEESSWEPLAVIHEDVPQYLRRKLKKMRLDASTRATLKAKYNTV
M*
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mRNA from alignment at H-paniculata_contig14509:448..756+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14509.2703.1 ID=mRNA_H-paniculata_contig14509.2703.1|Name=mRNA_H-paniculata_contig14509.2703.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=309bp|location=Sequence derived from alignment at H-paniculata_contig14509:448..756+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAATGCGGCCGTACGCTGACGCTTCCCTGATCGTGGGGAAGGACATTCA
GGCTGTGTTCGCTGCGGCGCAACAGCAAGGAGAGTTCCAGATCTCCCACA
TCCTCGACATCGGCGAGAGCCCTGACAAGAAGGGGGAGTACGTAGTGCTA
GTGGAATGGGTGGGGCTGGGTGCTGAGGAGAGCAGCTGGGAGCCGTTGGC
TGTCATCCACGAGGACGTGCCGCAGTACCTGAGGCGCAAGCTGAAGAAGA
TGCGACTGGATGCGAGCACCCGGGCCACCCTCAAGGCAAAGTACAACACT
GTAATGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig14509:448..756+

>mRNA_H-paniculata_contig14509.2703.1 ID=mRNA_H-paniculata_contig14509.2703.1|Name=mRNA_H-paniculata_contig14509.2703.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig14509:448..756+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGCCGTACGCTGACGCTTCCCTGATCGTGGGGAAGGACATTCAGGC
TGTGTTCGCTGCGGCGCAACAGCAAGGAGAGTTCCAGATCTCCCACATCC
TCGACATCGGCGAGAGCCCTGACAAGAAGGGGGAGTACGTAGTGCTAGTG
GAATGGGTGGGGCTGGGTGCTGAGGAGAGCAGCTGGGAGCCGTTGGCTGT
CATCCACGAGGACGTGCCGCAGTACCTGAGGCGCAAGCTGAAGAAGATGC
GACTGGATGCGAGCACCCGGGCCACCCTCAAGGCAAAGTACAACACTGTA
ATGTAGATGCGGCCGTACGCTGACGCTTCCCTGATCGTGGGGAAGGACAT
TCAGGCTGTGTTCGCTGCGGCGCAACAGCAAGGAGAGTTCCAGATCTCCC
ACATCCTCGACATCGGCGAGAGCCCTGACAAGAAGGGGGAGTACGTAGTG
CTAGTGGAATGGGTGGGGCTGGGTGCTGAGGAGAGCAGCTGGGAGCCGTT
GGCTGTCATCCACGAGGACGTGCCGCAGTACCTGAGGCGCAAGCTGAAGA
AGATGCGACTGGATGCGAGCACCCGGGCCACCCTCAAGGCAAAGTACAAC
ACTGTAATGTAG
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