mRNA_H-paniculata_contig145.2697.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig145.2697.1
Unique NamemRNA_H-paniculata_contig145.2697.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig145.2697.1 vs. uniprot
Match: A0A6H5L2E5_9PHAE (SAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E5_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 5.160e-21
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = 3 
Query:    6 TTQVTSWLSESMRPPRADVISRFHHGRVDGAALLELTDRDLLHPTEGLGITDTDTRRQILELVDAL 203
            T QVTSWL E MRPPRAD+IS+FH   VDG ALL +TDR LLHPTEGLGITD   RRQILE +D+L
Sbjct: 1253 TRQVTSWLREIMRPPRADIISKFHDSGVDGTALLSVTDRYLLHPTEGLGITDEVVRRQILEAMDSL 1318
[Close]
BLAST of mRNA_H-paniculata_contig145.2697.1 vs. uniprot
Match: D8LSX8_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX8_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 1.300e-20
Identity = 48/66 (72.73%), Postives = 52/66 (78.79%), Query Frame = 3 
Query:    6 TTQVTSWLSESMRPPRADVISRFHHGRVDGAALLELTDRDLLHPTEGLGITDTDTRRQILELVDAL 203
            T QVTSWL E MRPPRAD+IS+FH   VDG ALL +TDR LLHPTEGLGITD   RRQILE +D L
Sbjct: 1060 TRQVTSWLREIMRPPRADIISKFHDSGVDGTALLSVTDRYLLHPTEGLGITDEVVRRQILEAMDFL 1125
[Close]
BLAST of mRNA_H-paniculata_contig145.2697.1 vs. uniprot
Match: A0A835ZEJ2_9STRA (TRAF-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEJ2_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 4.010e-5
Identity = 26/40 (65.00%), Postives = 30/40 (75.00%), Query Frame = 3 
Query:   84 RVDGAALLELTDRDLLHPTEGLGITDTDTRRQILELVDAL 203
            RV+GAALL+LTDRDL HP EGLGI D   R +IL  V A+
Sbjct: 1198 RVNGAALLDLTDRDLAHPVEGLGIRDGARRERILACVRAM 1237
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig145.2697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L2E5_9PHAE5.160e-2172.73SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LSX8_ECTSI1.300e-2072.73SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZEJ2_9STRA4.010e-565.00TRAF-type domain-containing protein n=1 Tax=Tribon... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig145contigH-paniculata_contig145:32007..32931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size386
Cds size171
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig145.2697.1prot_H-paniculata_contig145.2697.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig145 32045..32754 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929154.8812292-UTR-H-paniculata_contig145:32006..320441622929154.8812292-UTR-H-paniculata_contig145:32006..32044Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig145 32007..32044 +
1691480751.8039787-UTR-H-paniculata_contig145:32006..320441691480751.8039787-UTR-H-paniculata_contig145:32006..32044Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig145 32007..32044 +
1622929154.911057-UTR-H-paniculata_contig145:32754..329311622929154.911057-UTR-H-paniculata_contig145:32754..32931Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig145 32755..32931 +
1691480751.8304203-UTR-H-paniculata_contig145:32754..329311691480751.8304203-UTR-H-paniculata_contig145:32754..32931Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig145 32755..32931 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929154.8916292-CDS-H-paniculata_contig145:32044..321271622929154.8916292-CDS-H-paniculata_contig145:32044..32127Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig145 32045..32127 +
1691480751.8132129-CDS-H-paniculata_contig145:32044..321271691480751.8132129-CDS-H-paniculata_contig145:32044..32127Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig145 32045..32127 +
1622929154.9013689-CDS-H-paniculata_contig145:32666..327541622929154.9013689-CDS-H-paniculata_contig145:32666..32754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig145 32667..32754 +
1691480751.821465-CDS-H-paniculata_contig145:32666..327541691480751.821465-CDS-H-paniculata_contig145:32666..32754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig145 32667..32754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig145.2697.1

>prot_H-paniculata_contig145.2697.1 ID=prot_H-paniculata_contig145.2697.1|Name=mRNA_H-paniculata_contig145.2697.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
MRPPRADVISRFHHGRVDGAALLELTDRDLLHPTEGLGITDTDTRRQILE
LVDALD*
back to top

mRNA from alignment at H-paniculata_contig145:32007..32931+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig145.2697.1 ID=mRNA_H-paniculata_contig145.2697.1|Name=mRNA_H-paniculata_contig145.2697.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=925bp|location=Sequence derived from alignment at H-paniculata_contig145:32007..32931+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACGACTACACAAGTTACAAGCTGGCTGAGTGAGAGTATGCGGCCTCCC
AGAGCCGATGTGATTTCTCGATTTCATCACGGTAGGGTCGATGGCGCTGC
CTTGCTGGAGTTAACTGACAGGCAAGGCTTGCGTTGTTATTTTATGTCCA
GAAGGAATGAATACGAGGGAAATTCAAAACGGGTGATATTGCTATGGACG
CACACTGTGCAACCCCTGGTTCTGTAAGAGGCGGTCTTTTTGCGGGGCTA
CCATGGCTTGATGTCGCTGGTGCGGTAAAGTCTTACTAGTTGCGAGTAAA
CTCATGCAACGCCTATTCGAGCTTCGTTCTTGAACACAGTTTTGCGCGAC
GCAGGCTCACCCGTGAAACACTGAGCGGCGTGAACCTGCGCTGCGAGAAA
GCTGCCGCGCTACCTATATGATGAACGTGTGTACTCGAGACATCCATGTG
GCGAAGTAGAAGAGAAAATGTACCATCCGCTGTGTAGTCGGGTATCCGTA
AATGCCCATCGAAAGCAACGTTTTTGGCAAGTGGGAATATCAACGAAAGA
CATTTTCCCAATGCCGCATCCATACATTCAGCCGGCAAGCCATCCGCTGA
CAGGCATCCGACAGAACTTGGCTAATCGCTTTGTTTCCCGCGTTGCTCTC
ATGGTTACAGGGACTTGCTTCACCCGACAGAAGGGTTAGGCATTACCGAC
ACGGATACTCGTCGGCAGATACTAGAGCTGGTGGATGCCCTGGACTAGTG
GGTTGTGAAGGGTCGCGGCGCCCCTACCGGCACACAATGAACCCGATATC
TCTCCTTCGCGTAAGGGAAGTAACTGACTATTCATTCGCTTAGCCAGTCT
CACAAGATGGAACGTTAACTCGAGCGAGGCAACAGTAAAACGAGACGTTT
GGACGCATTCCTCCTGGCGTATTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig145:32007..32931+

>mRNA_H-paniculata_contig145.2697.1 ID=mRNA_H-paniculata_contig145.2697.1|Name=mRNA_H-paniculata_contig145.2697.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig145:32007..32931+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGCCTCCCAGAGCCGATGTGATTTCTCGATTTCATCACGGTAGGGT
CGATGGCGCTGCCTTGCTGGAGTTAACTGACAGATGCGGCCTCCCAGAGC
CGATGTGATTTCTCGATTTCATCACGGTAGGGTCGATGGCGCTGCCTTGC
TGGAGTTAACTGACAGGGACTTGCTTCACCCGACAGAAGGGTTAGGCATT
ACCGACACGGATACTCGTCGGCAGATACTAGAGCTGGTGGATGCCCTGGA
CTAGGGACTTGCTTCACCCGACAGAAGGGTTAGGCATTACCGACACGGAT
ACTCGTCGGCAGATACTAGAGCTGGTGGATGCCCTGGACTAG
back to top