mRNA_H-paniculata_contig1445.2679.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1445.2679.1
Unique NamemRNA_H-paniculata_contig1445.2679.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1445.2679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1445contigH-paniculata_contig1445:19835..21859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2025
Cds size1092
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1445.2679.1prot_H-paniculata_contig1445.2679.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1445 19841..20932 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929152.1589706-UTR-H-paniculata_contig1445:19834..198401622929152.1589706-UTR-H-paniculata_contig1445:19834..19840Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1445 19835..19840 +
1691480750.6635065-UTR-H-paniculata_contig1445:19834..198401691480750.6635065-UTR-H-paniculata_contig1445:19834..19840Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1445 19835..19840 +
1622929152.1929507-UTR-H-paniculata_contig1445:20932..218591622929152.1929507-UTR-H-paniculata_contig1445:20932..21859Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1445 20933..21859 +
1691480750.6820133-UTR-H-paniculata_contig1445:20932..218591691480750.6820133-UTR-H-paniculata_contig1445:20932..21859Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1445 20933..21859 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929152.174461-CDS-H-paniculata_contig1445:19840..209321622929152.174461-CDS-H-paniculata_contig1445:19840..20932Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1445 19841..20932 +
1691480750.6729593-CDS-H-paniculata_contig1445:19840..209321691480750.6729593-CDS-H-paniculata_contig1445:19840..20932Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1445 19841..20932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1445.2679.1

>prot_H-paniculata_contig1445.2679.1 ID=prot_H-paniculata_contig1445.2679.1|Name=mRNA_H-paniculata_contig1445.2679.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=364bp
MPYMRGRPGKPSPIMSGGGYFTSGRKLASTECLVVKTVDNGIQRTLPSYL
ATMKTWHSLASSSRFHFREDRSIVGRATGKSASLSRRATTVPGEVGLVGV
AAGRGGNRPDQQGGGRSVDDGDDLSTASVEKNLRSLQQLWMHRSTSERNT
TFGVATTSSSSRSVASTAASSRTEQSLVENEMMANTNKVESFAHQLTQKG
AVFKERKSRRVHAPPPPYPLSSRNVQLRQLFNMGSLSECSSVSPLVSLSS
QKTSKSVVPKIPTRSSSNNMTSCTSGTSCGGTSVTAFALSGSCRSIGTMP
SHPVVRSRVSPVGLHHSVIPSKVASLIPSFPEAARWRRMNLRAARRSQIN
HVEMNSKARTLGE*
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mRNA from alignment at H-paniculata_contig1445:19835..21859+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1445.2679.1 ID=mRNA_H-paniculata_contig1445.2679.1|Name=mRNA_H-paniculata_contig1445.2679.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2025bp|location=Sequence derived from alignment at H-paniculata_contig1445:19835..21859+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAACAATGCCATATATGCGCGGTAGGCCAGGTAAACCTTCACCCATAAT
GAGCGGAGGTGGTTACTTCACGTCAGGCAGAAAGTTGGCATCTACGGAAT
GTTTGGTTGTCAAAACTGTGGACAACGGGATTCAACGGACTTTGCCGAGC
TACCTTGCGACGATGAAGACGTGGCATTCTCTTGCGTCGTCGTCGCGATT
TCATTTTCGAGAGGATCGCTCGATAGTTGGAAGGGCTACTGGAAAATCAG
CTTCGCTGTCACGAAGAGCGACCACCGTGCCTGGTGAGGTGGGCCTGGTA
GGTGTTGCCGCAGGAAGGGGGGGAAACCGTCCAGATCAACAGGGAGGAGG
ACGAAGTGTCGATGATGGTGACGATTTGTCGACAGCGTCCGTCGAGAAGA
ACTTGAGATCTCTGCAGCAGCTATGGATGCATCGTTCTACCAGTGAAAGA
AATACGACCTTTGGCGTTGCGACGACATCCTCGTCTTCTCGTAGCGTGGC
TAGTACCGCGGCGTCCTCTAGGACCGAGCAATCGTTAGTAGAGAACGAGA
TGATGGCGAATACGAATAAGGTTGAATCGTTCGCTCATCAGCTGACACAA
AAAGGAGCTGTGTTCAAGGAGCGCAAGTCCCGACGTGTGCATGCCCCTCC
CCCCCCGTACCCCCTCTCCTCCCGCAATGTTCAGCTTCGCCAACTCTTCA
ACATGGGTAGTCTTTCAGAATGCTCAAGTGTATCACCTCTTGTGTCGCTA
TCCTCACAGAAAACTTCGAAGTCGGTGGTACCAAAAATTCCCACTCGCAG
CAGCAGCAACAACATGACAAGCTGTACTAGCGGCACCAGTTGCGGGGGAA
CAAGCGTCACTGCGTTTGCTCTTAGTGGAAGTTGTCGGTCGATCGGGACA
ATGCCGTCGCACCCTGTTGTGCGTTCTCGTGTCTCGCCCGTGGGCCTCCA
CCACAGCGTCATTCCGTCAAAGGTGGCCAGCCTGATTCCGTCTTTCCCTG
AGGCCGCCCGATGGCGGCGGATGAACTTGCGCGCGGCGCGACGTAGTCAG
ATCAATCACGTTGAAATGAACTCTAAGGCAAGGACTCTTGGAGAGTAGCC
TCAGTAATGACTTACTTGCTGTTTTTCAGAAGACATAGCACTTTGAGTAG
TCGGCAATAGTTTTTCTATGCGTAGGTGGGGACATTTTTGGTAGACTCGT
GTTTAGCTTTGTTGCAAATGGGGCACGTACGTGTTGGTCTGCATATGTAC
AGCAGATGGCACGAAGTTTTGCGGGTTGGGGCGTCTCATCAAAAATGTGA
TAGGATTCTTCGAGAAGTCTCGTCTTCTAATCAACAAACTTTTTTCAAGT
GGTGCGGGTCATATGGATAAGGCCATTGCTGTTGGGGTCACTTGCAATTT
GCTAGCGTTGATGGCTCTTCGTGCTGAAATCTAGGTACATCCTTCAACGG
CAACGCGTGACCAATAACACCTCAAGAATACTACTGTATATAGTAATGCC
ATGGGGTGTACTATGAGTCATTTCTTGAGACCATTTTTTGGGGGTGGAAA
TATTGAAGTGTTGAAATTTGGAAATTTCGAAGAGCCGCGATTGCACGGGG
GATGCTTCGTTCTGATGTAGTGAGTTGATCTTCACTACTCCGATGAAGGT
TTGGTTCGGTGTAGTGTGGTGATGCTGCTATGTGGTTGGCGCATACTAGG
TATATGCTATTGGTTGAGTGAGGGGTTCAGTCTAATCACCATCTTGAACA
AGGAACGCGGAGCTTTGGAATACATACAGGAGTGGGAGGGATGTGTTGGT
GCGGTACTTCTGTAAACCAGATATCGCAACGTAAAAGTCATACAGATTGT
ACAGCAACATACGAAGAAAGTGTAGTCCATCCAGTAAAAATAAGCAGACG
GGGAGCAACGCGTGCGGGCATACGAGGGCGAAATCGCCGTTTATAACACT
CCGTCGTGGTAACCTTGGAAGTAACACGTAAGGGGTGCTGTCAGTGGGGT
GAGTGAGTGGATATACAAAGTAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1445:19835..21859+

>mRNA_H-paniculata_contig1445.2679.1 ID=mRNA_H-paniculata_contig1445.2679.1|Name=mRNA_H-paniculata_contig1445.2679.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2184bp|location=Sequence derived from alignment at H-paniculata_contig1445:19835..21859+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCATATATGCGCGGTAGGCCAGGTAAACCTTCACCCATAATGAGCGG
AGGTGGTTACTTCACGTCAGGCAGAAAGTTGGCATCTACGGAATGTTTGG
TTGTCAAAACTGTGGACAACGGGATTCAACGGACTTTGCCGAGCTACCTT
GCGACGATGAAGACGTGGCATTCTCTTGCGTCGTCGTCGCGATTTCATTT
TCGAGAGGATCGCTCGATAGTTGGAAGGGCTACTGGAAAATCAGCTTCGC
TGTCACGAAGAGCGACCACCGTGCCTGGTGAGGTGGGCCTGGTAGGTGTT
GCCGCAGGAAGGGGGGGAAACCGTCCAGATCAACAGGGAGGAGGACGAAG
TGTCGATGATGGTGACGATTTGTCGACAGCGTCCGTCGAGAAGAACTTGA
GATCTCTGCAGCAGCTATGGATGCATCGTTCTACCAGTGAAAGAAATACG
ACCTTTGGCGTTGCGACGACATCCTCGTCTTCTCGTAGCGTGGCTAGTAC
CGCGGCGTCCTCTAGGACCGAGCAATCGTTAGTAGAGAACGAGATGATGG
CGAATACGAATAAGGTTGAATCGTTCGCTCATCAGCTGACACAAAAAGGA
GCTGTGTTCAAGGAGCGCAAGTCCCGACGTGTGCATGCCCCTCCCCCCCC
GTACCCCCTCTCCTCCCGCAATGTTCAGCTTCGCCAACTCTTCAACATGG
GTAGTCTTTCAGAATGCTCAAGTGTATCACCTCTTGTGTCGCTATCCTCA
CAGAAAACTTCGAAGTCGGTGGTACCAAAAATTCCCACTCGCAGCAGCAG
CAACAACATGACAAGCTGTACTAGCGGCACCAGTTGCGGGGGAACAAGCG
TCACTGCGTTTGCTCTTAGTGGAAGTTGTCGGTCGATCGGGACAATGCCG
TCGCACCCTGTTGTGCGTTCTCGTGTCTCGCCCGTGGGCCTCCACCACAG
CGTCATTCCGTCAAAGGTGGCCAGCCTGATTCCGTCTTTCCCTGAGGCCG
CCCGATGGCGGCGGATGAACTTGCGCGCGGCGCGACGTAGTCAGATCAAT
CACGTTGAAATGAACTCTAAGGCAAGGACTCTTGGAGAGTAGATGCCATA
TATGCGCGGTAGGCCAGGTAAACCTTCACCCATAATGAGCGGAGGTGGTT
ACTTCACGTCAGGCAGAAAGTTGGCATCTACGGAATGTTTGGTTGTCAAA
ACTGTGGACAACGGGATTCAACGGACTTTGCCGAGCTACCTTGCGACGAT
GAAGACGTGGCATTCTCTTGCGTCGTCGTCGCGATTTCATTTTCGAGAGG
ATCGCTCGATAGTTGGAAGGGCTACTGGAAAATCAGCTTCGCTGTCACGA
AGAGCGACCACCGTGCCTGGTGAGGTGGGCCTGGTAGGTGTTGCCGCAGG
AAGGGGGGGAAACCGTCCAGATCAACAGGGAGGAGGACGAAGTGTCGATG
ATGGTGACGATTTGTCGACAGCGTCCGTCGAGAAGAACTTGAGATCTCTG
CAGCAGCTATGGATGCATCGTTCTACCAGTGAAAGAAATACGACCTTTGG
CGTTGCGACGACATCCTCGTCTTCTCGTAGCGTGGCTAGTACCGCGGCGT
CCTCTAGGACCGAGCAATCGTTAGTAGAGAACGAGATGATGGCGAATACG
AATAAGGTTGAATCGTTCGCTCATCAGCTGACACAAAAAGGAGCTGTGTT
CAAGGAGCGCAAGTCCCGACGTGTGCATGCCCCTCCCCCCCCGTACCCCC
TCTCCTCCCGCAATGTTCAGCTTCGCCAACTCTTCAACATGGGTAGTCTT
TCAGAATGCTCAAGTGTATCACCTCTTGTGTCGCTATCCTCACAGAAAAC
TTCGAAGTCGGTGGTACCAAAAATTCCCACTCGCAGCAGCAGCAACAACA
TGACAAGCTGTACTAGCGGCACCAGTTGCGGGGGAACAAGCGTCACTGCG
TTTGCTCTTAGTGGAAGTTGTCGGTCGATCGGGACAATGCCGTCGCACCC
TGTTGTGCGTTCTCGTGTCTCGCCCGTGGGCCTCCACCACAGCGTCATTC
CGTCAAAGGTGGCCAGCCTGATTCCGTCTTTCCCTGAGGCCGCCCGATGG
CGGCGGATGAACTTGCGCGCGGCGCGACGTAGTCAGATCAATCACGTTGA
AATGAACTCTAAGGCAAGGACTCTTGGAGAGTAG
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