mRNA_H-paniculata_contig14441.2671.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig14441.2671.1 vs. uniprot
Match: H3GB69_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB69_PHYRM) HSP 1 Score: 155 bits (392), Expect = 4.880e-41 Identity = 96/254 (37.80%), Postives = 142/254 (55.91%), Query Frame = 2 Query: 305 RRALKIYGFDECRGVPTPAEGKVEISAPESTDKPCEPKSLRAVLEKWHSIECRGIVGLLMYASTETGPDRAYAVH*AALRMEDPCREDFSTCKRIFRHLSTVPDLGITFGGNSNGYGLEGLVDADWAEDVEDRKSTTTGYVFKLNGGAITWCSRKQQLVTWSSTEAKYVAAGEAGKERVYLKELLGSIGFGCRGSMTLFEDIKSAIILSKRSGAHCRTNVIGVRWHGI*EWIREGVLALKFVHTVTNFADILTK 1066 +R + +G ++C+ V TPA+ ++ P S D+ P+ R +VG LMY +T T PD A AV A E + + KRI ++L T DLG+ F G + G L G DA+WA D++ R+STT GYVF LNG AI+W S++Q V SSTEA+Y+A A +E V+L++LL +G C G+ T F+D + I L+K H RT I +++H + E + + V+ L++ T AD TK Sbjct: 55 QRLAEKFGVEKCKAVHTPADSNSKLVKP-SEDEDFVPR-----------YPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGE-LIGYADANWAGDLDTRRSTT-GYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTFFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTK 294
BLAST of mRNA_H-paniculata_contig14441.2671.1 vs. uniprot
Match: A0A2N9GS71_FAGSY (Uncharacterized protein n=3 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GS71_FAGSY) HSP 1 Score: 150 bits (379), Expect = 1.960e-39 Identity = 97/254 (38.19%), Postives = 138/254 (54.33%), Query Frame = 2 Query: 305 RRALKIYGFDECRGVPTPAEGKVEISAPESTDKPCEPKSLRAVLEKWHSIECRGIVGLLMYASTETGPDRAYAVH*AALRMEDPCREDFSTCKRIFRHLSTVPDLGITFGGNSNGYGLEGLVDADWAEDVEDRKSTTTGYVFKLNGGAITWCSRKQQLVTWSSTEAKYVAAGEAGKERVYLKELLGSIGFGCRGSMTLFEDIKSAIILSKRSGAHCRTNVIGVRWHGI*EWIREGVLALKFVHTVTNFADILTK 1066 R+ L+ + + + + TP +S + PK+ + E + VG LMYA T PD A+AV + M +P RE ++ K IFR+L + GI F + G VDAD+A +V+DR+STT GYVF L+GG I W S Q +V S+TEA+Y+A EA KE ++LK L+ +G +G + + D +SAI L+K H RT I VR+H I E I G + L+ VHT N AD+L K Sbjct: 21 RKVLEKFSMLDAKPMSTPLANHFRLSGSQC------PKNEEEI-ENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQPGTNSVVGYVDADYAGEVDDRRSTT-GYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLN-QGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAADMLMK 265
BLAST of mRNA_H-paniculata_contig14441.2671.1 vs. uniprot
Match: H3G557_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G557_PHYRM) HSP 1 Score: 148 bits (373), Expect = 3.150e-39 Identity = 91/238 (38.24%), Postives = 135/238 (56.72%), Query Frame = 2 Query: 323 YGFDECRGVPTPAEGKVEISAPESTDKPCEPKSLRAVLEKWHSIECRGIVGLLMYASTETGPDRAYAVH*AALRMEDPCREDFSTCKRIFRHLSTVPDLGITFGGNSNGYGLEGLVDADWAEDVEDRKSTTTGYVFKLNGGAITWCSRKQQLVTWSSTEAKYVAAGEAGKERVYLKELLGSIGFGCRGSMTLFEDIKSAIILSKRSGAHCRTNVIGVRWHGI*EWIREGVLALKFVHT 1036 +G ++C+ V TPA+ ++ P S D+ P+ R +VG LMY +T T PD A AV A E + KRI ++L T DLG+ F G + G L G DA+WA D++ R+STT GYVF LNG AI+W S++Q V SSTEA+Y+A A +E V+L++LL +G C G+ T+F+D + I L+K H RT I +++H + E + + V+ L++ T Sbjct: 2 FGVEKCKAVHTPADSNSKLVKP-SEDEHFVPR-----------YPYRELVGALMYLATCTRPDIAQAVGEVAKFCEWYNKSHRVAAKRILKYLKTTQDLGLVFNGGTKGE-LIGYADANWAGDLDSRRSTT-GYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPT 225
BLAST of mRNA_H-paniculata_contig14441.2671.1 vs. uniprot
Match: A0A8K1FHK1_PYTOL (Uncharacterized protein n=3 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHK1_PYTOL) HSP 1 Score: 157 bits (398), Expect = 6.740e-39 Identity = 97/252 (38.49%), Postives = 139/252 (55.16%), Query Frame = 2 Query: 314 LKIYGFDECRGVPTPAEGKVEISAPESTDKPCEPKSLRAVLEKWHSIECRGIVGLLMYASTETGPDRAYAVH*AALRMEDPCREDFSTCKRIFRHLSTVPDLGITFGGNSNGYGLEGLVDADWAEDVEDRKSTTTGYVFKLNGGAITWCSRKQQLVTWSSTEAKYVAAGEAGKERVYLKELLGSIGFGC-RGSMTLFEDIKSAIILSKRSGAHCRTNVIGVRWHGI*EWIREGVLALKFVHTVTNFADILTK 1066 L +G +C+ V TP + +++ T CE E + R VG LMY T PD A +V + DPC + KR+ R+L P GI F G+S+G L G DADWA D+E R+ST+ GYV LNGG I+W S+KQ+ V SSTEA+Y+A EA +E V+LK + +G G++T+FED + AI L+K H RT I +R+H + E + +G + L++ T AD++TK Sbjct: 1122 LTKFGMQDCKPVKTPQDPGLKL-----TKSMCEGGCKHD--ETMKDVPYRNAVGALMYLMVGTRPDLAASVGTLSQFAADPCPTHWQALKRVLRYLQATPMHGICFSGSSDGE-LIGYSDADWAGDIETRRSTS-GYVSVLNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKSFMCELGEDSGNGALTVFEDNQGAIALAKNPEFHKRTKHIDIRYHFVREKVEDGQVVLEYCPTQEMLADLMTK 1364
BLAST of mRNA_H-paniculata_contig14441.2671.1 vs. uniprot
Match: UPI001372DC10 (Ty1/Copia family RNAse HI domain-containing protein n=3 Tax=Bacteria TaxID=2 RepID=UPI001372DC10) HSP 1 Score: 150 bits (378), Expect = 7.680e-39 Identity = 93/252 (36.90%), Postives = 138/252 (54.76%), Query Frame = 2 Query: 314 LKIYGFDECRGVPTPAEGKVEISAPESTDKPCEPKSLRAVLEKWHSIECRGIVGLLMYASTETGPDRAYAVH*AALRMEDPCREDFSTCKRIFRHLSTVPDLGITFGGNSNGYGLEGLVDADWAEDVEDRKSTTTGYVFKLNGGAITWCSRKQQLVTWSSTEAKYVAAGEAGKERVYLKELLGSIG-FGCRGSMTLFEDIKSAIILSKRSGAHCRTNVIGVRWHGI*EWIREGVLALKFVHTVTNFADILTK 1066 L+ + DE V TP + +++ T CE E ++ R VG LMY T PD A AV + DPC + KR+FR++ G+ F +S GL+G DADWA D+E R+ST+ GY F +NGG I+W S+KQ+ V SSTEA+Y+A EA +E V+LK L +G ++ ++ED + +I L+K H RT I +R+H + E + +G + L++V T+ ADI+TK Sbjct: 45 LEKFKMDESNPVKTPQDPGLKL-----TKAMCEGGCKHD--ETMANVPYRNAVGCLMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVFRYIRGTKTHGLVFQASSED-GLQGYSDADWAGDIESRRSTS-GYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPEFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTLDMLADIMTK 287
BLAST of mRNA_H-paniculata_contig14441.2671.1 vs. uniprot
Match: H3GB17_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB17_PHYRM) HSP 1 Score: 152 bits (383), Expect = 8.390e-39 Identity = 94/254 (37.01%), Postives = 141/254 (55.51%), Query Frame = 2 Query: 305 RRALKIYGFDECRGVPTPAEGKVEISAPESTDKPCEPKSLRAVLEKWHSIECRGIVGLLMYASTETGPDRAYAVH*AALRMEDPCREDFSTCKRIFRHLSTVPDLGITFGGNSNGYGLEGLVDADWAEDVEDRKSTTTGYVFKLNGGAITWCSRKQQLVTWSSTEAKYVAAGEAGKERVYLKELLGSIGFGCRGSMTLFEDIKSAIILSKRSGAHCRTNVIGVRWHGI*EWIREGVLALKFVHTVTNFADILTK 1066 +R + +G ++C+ V TPA+ ++ P + D+ P+ R +VG LMY +T T PD A AV A E + + KRI ++L T DLG+ F G + G L G DA WA D++ R+STT GYVF LNG AI+W S++Q V SSTEA+Y+A A +E V+L++LL +G C + T+F+D + I L+K H RT I +++H + E + + V+ L++ T AD TK Sbjct: 151 QRLAEKFGVEKCKAVHTPADSNSKLVKP-AEDEVFVPR-----------YPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGE-LIGYADASWAGDLDTRRSTT-GYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVAATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTK 390
BLAST of mRNA_H-paniculata_contig14441.2671.1 vs. uniprot
Match: A0A2P4XPH2_9STRA (RxLR effector candidate protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XPH2_9STRA) HSP 1 Score: 147 bits (370), Expect = 1.290e-38 Identity = 82/203 (40.39%), Postives = 121/203 (59.61%), Query Frame = 2 Query: 458 CRGIVGLLMYASTETGPDRAYAVH*AALRMEDPCREDFSTCKRIFRHLSTVPDLGITFGGNSNGYGLEGLVDADWAEDVEDRKSTTTGYVFKLNGGAITWCSRKQQLVTWSSTEAKYVAAGEAGKERVYLKELLGSIGFGCRGSMTLFEDIKSAIILSKRSGAHCRTNVIGVRWHGI*EWIREGVLALKFVHTVTNFADILTK 1066 CR +VG LMY +T T P+ AYAV A E + + KRI ++L T D+G+ F G G L G DA+WA D++ R+STT GYVF LNG AI+W S++Q V SSTEA+Y+A A +E V+L++LL +G+ +G+ T+++D + I L+K H RT I +++H + E + + L++ T AD TK Sbjct: 22 CRELVGALMYLATSTRPNIAYAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDVGLVFNGGIKGE-LVGYADANWAGDLDTRRSTT-GYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNAIQEAVWLRQLLKDLGYENKGATTIYQDNQGCIALAKNPAYHTRTKHIDIKFHFLREKVESKTVELEYKPTDEMIADGFTK 222
BLAST of mRNA_H-paniculata_contig14441.2671.1 vs. uniprot
Match: H3G656_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G656_PHYRM) HSP 1 Score: 145 bits (367), Expect = 2.350e-38 Identity = 80/207 (38.65%), Postives = 119/207 (57.49%), Query Frame = 2 Query: 449 SIECRGIVGLLMYASTETGPDRAYAVH*AALRMEDPCREDFSTCKRIFRHLSTVPDLGITFGGNSNGYGLEGLVDADWAEDVEDRKSTTTGYVFKLNGGAITWCSRKQQLVTWSSTEAKYVAAGEAGKERVYLKELLGSIG-FGCRGSMTLFEDIKSAIILSKRSGAHCRTNVIGVRWHGI*EWIREGVLALKFVHTVTNFADILTK 1066 ++ R VG LMY T PD A AV + DPC + KR+ R+L P G+ F + G+ G DADWA D+E R+ST+ GY F +NGG I+W S+KQ+ V SSTEA+Y+A EA +E V+LK L +G ++ +++D + +I L+K H RT I +R+H + E + +G + L+++ T ADI+TK Sbjct: 4 NVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEF-SREDSLGMCGYSDADWAGDIESRRSTS-GYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYKDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYISTTDMLADIMTK 208
BLAST of mRNA_H-paniculata_contig14441.2671.1 vs. uniprot
Match: A0A2N9HJ76_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HJ76_FAGSY) HSP 1 Score: 155 bits (393), Expect = 2.730e-38 Identity = 100/254 (39.37%), Postives = 140/254 (55.12%), Query Frame = 2 Query: 305 RRALKIYGFDECRGVPTPAEGKVEISAPESTDKPCEPKSLRAVLEKWHSIECRGIVGLLMYASTETGPDRAYAVH*AALRMEDPCREDFSTCKRIFRHLSTVPDLGITFGGNSNGYGLEGLVDADWAEDVEDRKSTTTGYVFKLNGGAITWCSRKQQLVTWSSTEAKYVAAGEAGKERVYLKELLGSIGFGCRGSMTLFEDIKSAIILSKRSGAHCRTNVIGVRWHGI*EWIREGVLALKFVHTVTNFADILTK 1066 R+ L+ + + + V TP +S + PK+ + E + VG LMYA T PD A+AV + M +P RE ++ K IFR+L + GI F S + G VDAD+A +V+DR+STT GYVF L+GG I W S Q +V S+TEA+Y+A EA KE ++LK L+ +G +G + + D +SAI L+K H RT I VR+H I E I G + L+ VHT N AD+LTK Sbjct: 716 RKVLEKFSMLDAKPVSTPLANHFRLSGSQC------PKNEEEI-ENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQSGTNSVVGYVDADYAGEVDDRRSTT-GYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLN-QGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAADMLTK 960
BLAST of mRNA_H-paniculata_contig14441.2671.1 vs. uniprot
Match: A0A2N9GRR2_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GRR2_FAGSY) HSP 1 Score: 155 bits (393), Expect = 3.000e-38 Identity = 100/254 (39.37%), Postives = 140/254 (55.12%), Query Frame = 2 Query: 305 RRALKIYGFDECRGVPTPAEGKVEISAPESTDKPCEPKSLRAVLEKWHSIECRGIVGLLMYASTETGPDRAYAVH*AALRMEDPCREDFSTCKRIFRHLSTVPDLGITFGGNSNGYGLEGLVDADWAEDVEDRKSTTTGYVFKLNGGAITWCSRKQQLVTWSSTEAKYVAAGEAGKERVYLKELLGSIGFGCRGSMTLFEDIKSAIILSKRSGAHCRTNVIGVRWHGI*EWIREGVLALKFVHTVTNFADILTK 1066 R+ L+ + + + V TP +S + PK+ + E + VG LMYA T PD A+AV + M +P RE ++ K IFR+L + GI F S + G VDAD+A +V+DR+STT GYVF L+GG I W S Q +V S+TEA+Y+A EA KE ++LK L+ +G +G + + D +SAI L+K H RT I VR+H I E I G + L+ VHT N AD+LTK Sbjct: 998 RKVLEKFSMLDAKPVSTPLANHFRLSGSQC------PKNEEEI-ENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQSGTNSVVGYVDADYAGEVDDRRSTT-GYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLN-QGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAADMLTK 1242 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14441.2671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14441.2671.1 >prot_H-paniculata_contig14441.2671.1 ID=prot_H-paniculata_contig14441.2671.1|Name=mRNA_H-paniculata_contig14441.2671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp MEDPCREDFSTCKRIFRHLSTVPDLGITFGGNSNGYGLEGLVDADWAEDVback to top mRNA from alignment at H-paniculata_contig14441:4612..5978+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig14441.2671.1 ID=mRNA_H-paniculata_contig14441.2671.1|Name=mRNA_H-paniculata_contig14441.2671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1367bp|location=Sequence derived from alignment at H-paniculata_contig14441:4612..5978+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig14441:4612..5978+ >mRNA_H-paniculata_contig14441.2671.1 ID=mRNA_H-paniculata_contig14441.2671.1|Name=mRNA_H-paniculata_contig14441.2671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig14441:4612..5978+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |