mRNA_H-paniculata_contig14441.2671.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14441.2671.1
Unique NamemRNA_H-paniculata_contig14441.2671.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14441.2671.1 vs. uniprot
Match: H3GB69_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB69_PHYRM)

HSP 1 Score: 155 bits (392), Expect = 4.880e-41
Identity = 96/254 (37.80%), Postives = 142/254 (55.91%), Query Frame = 2
Query:  305 RRALKIYGFDECRGVPTPAEGKVEISAPESTDKPCEPKSLRAVLEKWHSIECRGIVGLLMYASTETGPDRAYAVH*AALRMEDPCREDFSTCKRIFRHLSTVPDLGITFGGNSNGYGLEGLVDADWAEDVEDRKSTTTGYVFKLNGGAITWCSRKQQLVTWSSTEAKYVAAGEAGKERVYLKELLGSIGFGCRGSMTLFEDIKSAIILSKRSGAHCRTNVIGVRWHGI*EWIREGVLALKFVHTVTNFADILTK 1066
            +R  + +G ++C+ V TPA+   ++  P S D+   P+              R +VG LMY +T T PD A AV   A   E   +  +   KRI ++L T  DLG+ F G + G  L G  DA+WA D++ R+STT GYVF LNG AI+W S++Q  V  SSTEA+Y+A   A +E V+L++LL  +G  C G+ T F+D +  I L+K    H RT  I +++H + E + + V+ L++  T    AD  TK
Sbjct:   55 QRLAEKFGVEKCKAVHTPADSNSKLVKP-SEDEDFVPR-----------YPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGE-LIGYADANWAGDLDTRRSTT-GYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTFFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTK 294          
BLAST of mRNA_H-paniculata_contig14441.2671.1 vs. uniprot
Match: A0A2N9GS71_FAGSY (Uncharacterized protein n=3 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GS71_FAGSY)

HSP 1 Score: 150 bits (379), Expect = 1.960e-39
Identity = 97/254 (38.19%), Postives = 138/254 (54.33%), Query Frame = 2
Query:  305 RRALKIYGFDECRGVPTPAEGKVEISAPESTDKPCEPKSLRAVLEKWHSIECRGIVGLLMYASTETGPDRAYAVH*AALRMEDPCREDFSTCKRIFRHLSTVPDLGITFGGNSNGYGLEGLVDADWAEDVEDRKSTTTGYVFKLNGGAITWCSRKQQLVTWSSTEAKYVAAGEAGKERVYLKELLGSIGFGCRGSMTLFEDIKSAIILSKRSGAHCRTNVIGVRWHGI*EWIREGVLALKFVHTVTNFADILTK 1066
            R+ L+ +   + + + TP      +S  +       PK+   + E    +     VG LMYA   T PD A+AV   +  M +P RE ++  K IFR+L    + GI F        + G VDAD+A +V+DR+STT GYVF L+GG I W S  Q +V  S+TEA+Y+A  EA KE ++LK L+  +G   +G + +  D +SAI L+K    H RT  I VR+H I E I  G + L+ VHT  N AD+L K
Sbjct:   21 RKVLEKFSMLDAKPMSTPLANHFRLSGSQC------PKNEEEI-ENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQPGTNSVVGYVDADYAGEVDDRRSTT-GYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLN-QGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAADMLMK 265          
BLAST of mRNA_H-paniculata_contig14441.2671.1 vs. uniprot
Match: H3G557_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G557_PHYRM)

HSP 1 Score: 148 bits (373), Expect = 3.150e-39
Identity = 91/238 (38.24%), Postives = 135/238 (56.72%), Query Frame = 2
Query:  323 YGFDECRGVPTPAEGKVEISAPESTDKPCEPKSLRAVLEKWHSIECRGIVGLLMYASTETGPDRAYAVH*AALRMEDPCREDFSTCKRIFRHLSTVPDLGITFGGNSNGYGLEGLVDADWAEDVEDRKSTTTGYVFKLNGGAITWCSRKQQLVTWSSTEAKYVAAGEAGKERVYLKELLGSIGFGCRGSMTLFEDIKSAIILSKRSGAHCRTNVIGVRWHGI*EWIREGVLALKFVHT 1036
            +G ++C+ V TPA+   ++  P S D+   P+              R +VG LMY +T T PD A AV   A   E   +      KRI ++L T  DLG+ F G + G  L G  DA+WA D++ R+STT GYVF LNG AI+W S++Q  V  SSTEA+Y+A   A +E V+L++LL  +G  C G+ T+F+D +  I L+K    H RT  I +++H + E + + V+ L++  T
Sbjct:    2 FGVEKCKAVHTPADSNSKLVKP-SEDEHFVPR-----------YPYRELVGALMYLATCTRPDIAQAVGEVAKFCEWYNKSHRVAAKRILKYLKTTQDLGLVFNGGTKGE-LIGYADANWAGDLDSRRSTT-GYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPT 225          
BLAST of mRNA_H-paniculata_contig14441.2671.1 vs. uniprot
Match: A0A8K1FHK1_PYTOL (Uncharacterized protein n=3 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHK1_PYTOL)

HSP 1 Score: 157 bits (398), Expect = 6.740e-39
Identity = 97/252 (38.49%), Postives = 139/252 (55.16%), Query Frame = 2
Query:  314 LKIYGFDECRGVPTPAEGKVEISAPESTDKPCEPKSLRAVLEKWHSIECRGIVGLLMYASTETGPDRAYAVH*AALRMEDPCREDFSTCKRIFRHLSTVPDLGITFGGNSNGYGLEGLVDADWAEDVEDRKSTTTGYVFKLNGGAITWCSRKQQLVTWSSTEAKYVAAGEAGKERVYLKELLGSIGFGC-RGSMTLFEDIKSAIILSKRSGAHCRTNVIGVRWHGI*EWIREGVLALKFVHTVTNFADILTK 1066
            L  +G  +C+ V TP +  +++     T   CE        E    +  R  VG LMY    T PD A +V   +    DPC   +   KR+ R+L   P  GI F G+S+G  L G  DADWA D+E R+ST+ GYV  LNGG I+W S+KQ+ V  SSTEA+Y+A  EA +E V+LK  +  +G     G++T+FED + AI L+K    H RT  I +R+H + E + +G + L++  T    AD++TK
Sbjct: 1122 LTKFGMQDCKPVKTPQDPGLKL-----TKSMCEGGCKHD--ETMKDVPYRNAVGALMYLMVGTRPDLAASVGTLSQFAADPCPTHWQALKRVLRYLQATPMHGICFSGSSDGE-LIGYSDADWAGDIETRRSTS-GYVSVLNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKSFMCELGEDSGNGALTVFEDNQGAIALAKNPEFHKRTKHIDIRYHFVREKVEDGQVVLEYCPTQEMLADLMTK 1364          
BLAST of mRNA_H-paniculata_contig14441.2671.1 vs. uniprot
Match: UPI001372DC10 (Ty1/Copia family RNAse HI domain-containing protein n=3 Tax=Bacteria TaxID=2 RepID=UPI001372DC10)

HSP 1 Score: 150 bits (378), Expect = 7.680e-39
Identity = 93/252 (36.90%), Postives = 138/252 (54.76%), Query Frame = 2
Query:  314 LKIYGFDECRGVPTPAEGKVEISAPESTDKPCEPKSLRAVLEKWHSIECRGIVGLLMYASTETGPDRAYAVH*AALRMEDPCREDFSTCKRIFRHLSTVPDLGITFGGNSNGYGLEGLVDADWAEDVEDRKSTTTGYVFKLNGGAITWCSRKQQLVTWSSTEAKYVAAGEAGKERVYLKELLGSIG-FGCRGSMTLFEDIKSAIILSKRSGAHCRTNVIGVRWHGI*EWIREGVLALKFVHTVTNFADILTK 1066
            L+ +  DE   V TP +  +++     T   CE        E   ++  R  VG LMY    T PD A AV   +    DPC   +   KR+FR++      G+ F  +S   GL+G  DADWA D+E R+ST+ GY F +NGG I+W S+KQ+ V  SSTEA+Y+A  EA +E V+LK  L  +G      ++ ++ED + +I L+K    H RT  I +R+H + E + +G + L++V T+   ADI+TK
Sbjct:   45 LEKFKMDESNPVKTPQDPGLKL-----TKAMCEGGCKHD--ETMANVPYRNAVGCLMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVFRYIRGTKTHGLVFQASSED-GLQGYSDADWAGDIESRRSTS-GYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPEFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTLDMLADIMTK 287          
BLAST of mRNA_H-paniculata_contig14441.2671.1 vs. uniprot
Match: H3GB17_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB17_PHYRM)

HSP 1 Score: 152 bits (383), Expect = 8.390e-39
Identity = 94/254 (37.01%), Postives = 141/254 (55.51%), Query Frame = 2
Query:  305 RRALKIYGFDECRGVPTPAEGKVEISAPESTDKPCEPKSLRAVLEKWHSIECRGIVGLLMYASTETGPDRAYAVH*AALRMEDPCREDFSTCKRIFRHLSTVPDLGITFGGNSNGYGLEGLVDADWAEDVEDRKSTTTGYVFKLNGGAITWCSRKQQLVTWSSTEAKYVAAGEAGKERVYLKELLGSIGFGCRGSMTLFEDIKSAIILSKRSGAHCRTNVIGVRWHGI*EWIREGVLALKFVHTVTNFADILTK 1066
            +R  + +G ++C+ V TPA+   ++  P + D+   P+              R +VG LMY +T T PD A AV   A   E   +  +   KRI ++L T  DLG+ F G + G  L G  DA WA D++ R+STT GYVF LNG AI+W S++Q  V  SSTEA+Y+A   A +E V+L++LL  +G  C  + T+F+D +  I L+K    H RT  I +++H + E + + V+ L++  T    AD  TK
Sbjct:  151 QRLAEKFGVEKCKAVHTPADSNSKLVKP-AEDEVFVPR-----------YPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGE-LIGYADASWAGDLDTRRSTT-GYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVAATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTK 390          
BLAST of mRNA_H-paniculata_contig14441.2671.1 vs. uniprot
Match: A0A2P4XPH2_9STRA (RxLR effector candidate protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XPH2_9STRA)

HSP 1 Score: 147 bits (370), Expect = 1.290e-38
Identity = 82/203 (40.39%), Postives = 121/203 (59.61%), Query Frame = 2
Query:  458 CRGIVGLLMYASTETGPDRAYAVH*AALRMEDPCREDFSTCKRIFRHLSTVPDLGITFGGNSNGYGLEGLVDADWAEDVEDRKSTTTGYVFKLNGGAITWCSRKQQLVTWSSTEAKYVAAGEAGKERVYLKELLGSIGFGCRGSMTLFEDIKSAIILSKRSGAHCRTNVIGVRWHGI*EWIREGVLALKFVHTVTNFADILTK 1066
            CR +VG LMY +T T P+ AYAV   A   E   +  +   KRI ++L T  D+G+ F G   G  L G  DA+WA D++ R+STT GYVF LNG AI+W S++Q  V  SSTEA+Y+A   A +E V+L++LL  +G+  +G+ T+++D +  I L+K    H RT  I +++H + E +    + L++  T    AD  TK
Sbjct:   22 CRELVGALMYLATSTRPNIAYAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDVGLVFNGGIKGE-LVGYADANWAGDLDTRRSTT-GYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNAIQEAVWLRQLLKDLGYENKGATTIYQDNQGCIALAKNPAYHTRTKHIDIKFHFLREKVESKTVELEYKPTDEMIADGFTK 222          
BLAST of mRNA_H-paniculata_contig14441.2671.1 vs. uniprot
Match: H3G656_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G656_PHYRM)

HSP 1 Score: 145 bits (367), Expect = 2.350e-38
Identity = 80/207 (38.65%), Postives = 119/207 (57.49%), Query Frame = 2
Query:  449 SIECRGIVGLLMYASTETGPDRAYAVH*AALRMEDPCREDFSTCKRIFRHLSTVPDLGITFGGNSNGYGLEGLVDADWAEDVEDRKSTTTGYVFKLNGGAITWCSRKQQLVTWSSTEAKYVAAGEAGKERVYLKELLGSIG-FGCRGSMTLFEDIKSAIILSKRSGAHCRTNVIGVRWHGI*EWIREGVLALKFVHTVTNFADILTK 1066
            ++  R  VG LMY    T PD A AV   +    DPC   +   KR+ R+L   P  G+ F    +  G+ G  DADWA D+E R+ST+ GY F +NGG I+W S+KQ+ V  SSTEA+Y+A  EA +E V+LK  L  +G      ++ +++D + +I L+K    H RT  I +R+H + E + +G + L+++ T    ADI+TK
Sbjct:    4 NVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEF-SREDSLGMCGYSDADWAGDIESRRSTS-GYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYKDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYISTTDMLADIMTK 208          
BLAST of mRNA_H-paniculata_contig14441.2671.1 vs. uniprot
Match: A0A2N9HJ76_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HJ76_FAGSY)

HSP 1 Score: 155 bits (393), Expect = 2.730e-38
Identity = 100/254 (39.37%), Postives = 140/254 (55.12%), Query Frame = 2
Query:  305 RRALKIYGFDECRGVPTPAEGKVEISAPESTDKPCEPKSLRAVLEKWHSIECRGIVGLLMYASTETGPDRAYAVH*AALRMEDPCREDFSTCKRIFRHLSTVPDLGITFGGNSNGYGLEGLVDADWAEDVEDRKSTTTGYVFKLNGGAITWCSRKQQLVTWSSTEAKYVAAGEAGKERVYLKELLGSIGFGCRGSMTLFEDIKSAIILSKRSGAHCRTNVIGVRWHGI*EWIREGVLALKFVHTVTNFADILTK 1066
            R+ L+ +   + + V TP      +S  +       PK+   + E    +     VG LMYA   T PD A+AV   +  M +P RE ++  K IFR+L    + GI F   S    + G VDAD+A +V+DR+STT GYVF L+GG I W S  Q +V  S+TEA+Y+A  EA KE ++LK L+  +G   +G + +  D +SAI L+K    H RT  I VR+H I E I  G + L+ VHT  N AD+LTK
Sbjct:  716 RKVLEKFSMLDAKPVSTPLANHFRLSGSQC------PKNEEEI-ENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQSGTNSVVGYVDADYAGEVDDRRSTT-GYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLN-QGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAADMLTK 960          
BLAST of mRNA_H-paniculata_contig14441.2671.1 vs. uniprot
Match: A0A2N9GRR2_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GRR2_FAGSY)

HSP 1 Score: 155 bits (393), Expect = 3.000e-38
Identity = 100/254 (39.37%), Postives = 140/254 (55.12%), Query Frame = 2
Query:  305 RRALKIYGFDECRGVPTPAEGKVEISAPESTDKPCEPKSLRAVLEKWHSIECRGIVGLLMYASTETGPDRAYAVH*AALRMEDPCREDFSTCKRIFRHLSTVPDLGITFGGNSNGYGLEGLVDADWAEDVEDRKSTTTGYVFKLNGGAITWCSRKQQLVTWSSTEAKYVAAGEAGKERVYLKELLGSIGFGCRGSMTLFEDIKSAIILSKRSGAHCRTNVIGVRWHGI*EWIREGVLALKFVHTVTNFADILTK 1066
            R+ L+ +   + + V TP      +S  +       PK+   + E    +     VG LMYA   T PD A+AV   +  M +P RE ++  K IFR+L    + GI F   S    + G VDAD+A +V+DR+STT GYVF L+GG I W S  Q +V  S+TEA+Y+A  EA KE ++LK L+  +G   +G + +  D +SAI L+K    H RT  I VR+H I E I  G + L+ VHT  N AD+LTK
Sbjct:  998 RKVLEKFSMLDAKPVSTPLANHFRLSGSQC------PKNEEEI-ENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQSGTNSVVGYVDADYAGEVDDRRSTT-GYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLN-QGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAADMLTK 1242          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14441.2671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3GB69_PHYRM4.880e-4137.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9GS71_FAGSY1.960e-3938.19Uncharacterized protein n=3 Tax=Fagus sylvatica Ta... [more]
H3G557_PHYRM3.150e-3938.24Uncharacterized protein n=3 Tax=Phytophthora ramor... [more]
A0A8K1FHK1_PYTOL6.740e-3938.49Uncharacterized protein n=3 Tax=Pythium oligandrum... [more]
UPI001372DC107.680e-3936.90Ty1/Copia family RNAse HI domain-containing protei... [more]
H3GB17_PHYRM8.390e-3937.01Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P4XPH2_9STRA1.290e-3840.39RxLR effector candidate protein (Fragment) n=1 Tax... [more]
H3G656_PHYRM2.350e-3838.65Uncharacterized protein n=3 Tax=Phytophthora ramor... [more]
A0A2N9HJ76_FAGSY2.730e-3839.37Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9GRR2_FAGSY3.000e-3839.37Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14441contigH-paniculata_contig14441:4612..5978 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score120.6
Seed ortholog evalue6.4e-25
Seed eggNOG ortholog7425.NV18849-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons3
Model size1066
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14441.2671.1prot_H-paniculata_contig14441.2671.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14441 5457..5903 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929150.4917343-UTR-H-paniculata_contig14441:4611..46781622929150.4917343-UTR-H-paniculata_contig14441:4611..4678Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14441 4612..4678 +
1691480750.3760586-UTR-H-paniculata_contig14441:4611..46781691480750.3760586-UTR-H-paniculata_contig14441:4611..4678Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14441 4612..4678 +
1622929150.5045187-UTR-H-paniculata_contig14441:4941..53091622929150.5045187-UTR-H-paniculata_contig14441:4941..5309Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14441 4942..5309 +
1691480750.3968282-UTR-H-paniculata_contig14441:4941..53091691480750.3968282-UTR-H-paniculata_contig14441:4941..5309Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14441 4942..5309 +
1622929150.5140743-UTR-H-paniculata_contig14441:5347..54561622929150.5140743-UTR-H-paniculata_contig14441:5347..5456Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14441 5348..5456 +
1691480750.4113705-UTR-H-paniculata_contig14441:5347..54561691480750.4113705-UTR-H-paniculata_contig14441:5347..5456Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14441 5348..5456 +
1622929151.5622866-UTR-H-paniculata_contig14441:5903..59781622929151.5622866-UTR-H-paniculata_contig14441:5903..5978Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14441 5904..5978 +
1691480750.427278-UTR-H-paniculata_contig14441:5903..59781691480750.427278-UTR-H-paniculata_contig14441:5903..5978Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14441 5904..5978 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929151.4352174-CDS-H-paniculata_contig14441:5456..59031622929151.4352174-CDS-H-paniculata_contig14441:5456..5903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14441 5457..5903 +
1691480750.419255-CDS-H-paniculata_contig14441:5456..59031691480750.419255-CDS-H-paniculata_contig14441:5456..5903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14441 5457..5903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14441.2671.1

>prot_H-paniculata_contig14441.2671.1 ID=prot_H-paniculata_contig14441.2671.1|Name=mRNA_H-paniculata_contig14441.2671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
MEDPCREDFSTCKRIFRHLSTVPDLGITFGGNSNGYGLEGLVDADWAEDV
EDRKSTTTGYVFKLNGGAITWCSRKQQLVTWSSTEAKYVAAGEAGKERVY
LKELLGSIGFGCRGSMTLFEDIKSAIILSKRSGAHCRTNVIGVRWHGI*
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mRNA from alignment at H-paniculata_contig14441:4612..5978+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14441.2671.1 ID=mRNA_H-paniculata_contig14441.2671.1|Name=mRNA_H-paniculata_contig14441.2671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1367bp|location=Sequence derived from alignment at H-paniculata_contig14441:4612..5978+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTACAAAGCGCGACTGGTGGTTCAAGGGCTTTCACAGGTAGAGGGTGA AGATTGTTTAGAAGCCAGTGCCCCCGTAGCTCGCATGTCGACGTTACGTA CTGTTTTTAGCCTGGCCGCCGAGCATGATTTCGAATTAGAAGGCATGGAC GTAGATGTGGCGTATTTGAACGCCCCCGTAGGAGAAGAGCTGTATGTTAA GCTACCCCTAGAGTTTTCCCTCTCTCCCGCGACATTCCGTTTGCGCCCCG CCTGCGGAAAAGCCTGTACGGCCTCAAGCAGAGCAGCCGTAACTGGAATA ACATGCTTGACGACTTTCTTGTTGGGATAGGACTCGACGGTTCTACTACC GACCCATGCTTGTACTTCTCTCGCGACGATGGGGGAGAGACAGACATTCT CGTGGCCGTGCATGTTGACGACCTGGTCATAGCTGGACGTTGTGAGAAAG TAGACGAGTTCAAGCACGACATAAGTCGGCGTTTTAGGATGAAAGACTTG GGTTCTCTCCCACGCGTTTTGGGAATAGAAGTACGACGTGATTGCCCTAA TGGTACCATAGCCATATCGCAGGGCACTAAAAATATACGGTTTTGACGAG TGTCGAGGGGTACCCACCCCTGCAGAGGGGAAAGTGGAGATTTCGGCACC CGAGTCGACCGACAAGCCCTGCGAACCGAAGTCACTTAGGGCTGTACTGT CGGATATAGGCGCAGGAGTACAAGAAAATAGCAGAGGGAGAAGTGGCATT CAATTGAATGCAGAGGCATCGTAGGATTACTCATGTACGCCTCAACAGAA ACTGGACCTGATAGAGCATACGCGGTACACTAAGCAGCACTTCGTATGGA GGACCCATGTCGGGAAGACTTCAGTACATGCAAGCGTATTTTTCGTCATC TCAGTACTGTGCCTGACCTCGGCATTACGTTCGGCGGTAATAGTAATGGT TACGGTCTGGAAGGATTGGTTGACGCCGATTGGGCGGAAGATGTCGAGGA CCGAAAGTCCACAACAACAGGATACGTTTTCAAGCTAAACGGTGGTGCGA TAACTTGGTGCTCTAGGAAGCAACAGTTAGTGACATGGTCCAGTACAGAG GCAAAGTACGTTGCGGCAGGAGAAGCGGGAAAGGAGAGGGTATATCTCAA GGAGTTACTAGGATCGATAGGTTTCGGATGCAGGGGGAGCATGACATTGT TTGAGGACATTAAGTCAGCTATCATTCTCAGTAAGAGATCTGGCGCACAC TGCAGGACAAATGTCATCGGAGTGCGCTGGCACGGAATTTGAGAGTGGAT TCGGGAAGGAGTGTTGGCGCTGAAATTCGTGCATACCGTGACCAACTTTG CTGACATTTTAACGAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig14441:4612..5978+

>mRNA_H-paniculata_contig14441.2671.1 ID=mRNA_H-paniculata_contig14441.2671.1|Name=mRNA_H-paniculata_contig14441.2671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig14441:4612..5978+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGACCCATGTCGGGAAGACTTCAGTACATGCAAGCGTATTTTTCG
TCATCTCAGTACTGTGCCTGACCTCGGCATTACGTTCGGCGGTAATAGTA
ATGGTTACGGTCTGGAAGGATTGGTTGACGCCGATTGGGCGGAAGATGTC
GAGGACCGAAAGTCCACAACAACAGGATACGTTTTCAAGCTAAACGGTGG
TGCGATAACTTGGTGCTCTAGGAAGCAACAGTTAGTGACATGGTCCAGTA
CAGAGGCAAAGTACGTTGCGGCAGGAGAAGCGGGAAAGGAGAGGGTATAT
CTCAAGGAGTTACTAGGATCGATAGGTTTCGGATGCAGGGGGAGCATGAC
ATTGTTTGAGGACATTAAGTCAGCTATCATTCTCAGTAAGAGATCTGGCG
CACACTGCAGGACAAATGTCATCGGAGTGCGCTGGCACGGAATTTGAATG
GAGGACCCATGTCGGGAAGACTTCAGTACATGCAAGCGTATTTTTCGTCA
TCTCAGTACTGTGCCTGACCTCGGCATTACGTTCGGCGGTAATAGTAATG
GTTACGGTCTGGAAGGATTGGTTGACGCCGATTGGGCGGAAGATGTCGAG
GACCGAAAGTCCACAACAACAGGATACGTTTTCAAGCTAAACGGTGGTGC
GATAACTTGGTGCTCTAGGAAGCAACAGTTAGTGACATGGTCCAGTACAG
AGGCAAAGTACGTTGCGGCAGGAGAAGCGGGAAAGGAGAGGGTATATCTC
AAGGAGTTACTAGGATCGATAGGTTTCGGATGCAGGGGGAGCATGACATT
GTTTGAGGACATTAAGTCAGCTATCATTCTCAGTAAGAGATCTGGCGCAC
ACTGCAGGACAAATGTCATCGGAGTGCGCTGGCACGGAATTTGA
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