mRNA_H-paniculata_contig14436.2664.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14436.2664.1
Unique NamemRNA_H-paniculata_contig14436.2664.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14436.2664.1 vs. uniprot
Match: A0A6H5JIN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN4_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 2.320e-43
Identity = 73/82 (89.02%), Postives = 79/82 (96.34%), Query Frame = 1
Query:   10 FDERILVPEATDQWLWIVIVGAFGAFFAAFGIGANNVANAFATSVGAKALTIRQAVVLAGIFEFLGAVFLGSHVTKTIRKGI 255
            + ERILVPE TDQ+LWI+IVGAFGAFFAAFGIGAN+VANAFATSVGAKALTI+QAV+LAGIFEFLGAVFLGSHVTKTIR GI
Sbjct:    6 YAERILVPETTDQFLWILIVGAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVILAGIFEFLGAVFLGSHVTKTIRSGI 87          
BLAST of mRNA_H-paniculata_contig14436.2664.1 vs. uniprot
Match: D7G5U7_ECTSI (High affinity phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U7_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 5.270e-42
Identity = 73/80 (91.25%), Postives = 78/80 (97.50%), Query Frame = 1
Query:   16 ERILVPEATDQWLWIVIVGAFGAFFAAFGIGANNVANAFATSVGAKALTIRQAVVLAGIFEFLGAVFLGSHVTKTIRKGI 255
            ERIL PEATDQ+LWI+IV AFGAFFAAFGIGAN+VANAFATSVGAKALTI+QAVVLAG+FEFLGAVFLGSHVTKTIRKGI
Sbjct:   33 ERILAPEATDQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAGVFEFLGAVFLGSHVTKTIRKGI 112          
BLAST of mRNA_H-paniculata_contig14436.2664.1 vs. uniprot
Match: A0A6H5JNE7_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE7_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 2.340e-39
Identity = 74/86 (86.05%), Postives = 79/86 (91.86%), Query Frame = 1
Query:    1 MSG-FDERILVPEATDQWLWIVIVGAFGAFFAAFGIGANNVANAFATSVGAKALTIRQAVVLAGIFEFLGAVFLGSHVTKTIRKGI 255
            M G F+ERIL PE TDQWLWI+IV +FGAFFAAFGIGAN+VANAFATSVGAKALTI+QAVVLA IFEF GAVFLGSHVTKTIRKGI
Sbjct:    1 MDGVFEERILAPETTDQWLWILIVASFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAAIFEFAGAVFLGSHVTKTIRKGI 86          
BLAST of mRNA_H-paniculata_contig14436.2664.1 vs. uniprot
Match: D7G0K9_ECTSI (Phosphate transporter n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K9_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 8.960e-39
Identity = 73/82 (89.02%), Postives = 77/82 (93.90%), Query Frame = 1
Query:   10 FDERILVPEATDQWLWIVIVGAFGAFFAAFGIGANNVANAFATSVGAKALTIRQAVVLAGIFEFLGAVFLGSHVTKTIRKGI 255
            + ERIL PE TD +LWIVIVGAFGAFFAAFGIGAN+VANAFATSVGAKALTI+QAVVLAGIFEFLGAVFLGSHVTKTIR GI
Sbjct:    6 YTERILAPETTDHFLWIVIVGAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAGIFEFLGAVFLGSHVTKTIRSGI 87          
BLAST of mRNA_H-paniculata_contig14436.2664.1 vs. uniprot
Match: D8LJQ3_ECTSI (Pho4 high affinity phosphate transporter, probable (IC) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ3_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 1.620e-35
Identity = 58/84 (69.05%), Postives = 73/84 (86.90%), Query Frame = 1
Query:    4 SGFDERILVPEATDQWLWIVIVGAFGAFFAAFGIGANNVANAFATSVGAKALTIRQAVVLAGIFEFLGAVFLGSHVTKTIRKGI 255
                 R+L PEA+DQWLWIV+VGAFG+F AAFGIGAN+VANAF+TSVGA+A+T++QA+VLAG+FEFLGA+ LG+ VTK IR+ I
Sbjct:    3 EALQPRMLAPEASDQWLWIVVVGAFGSFLAAFGIGANDVANAFSTSVGARAVTLKQAIVLAGVFEFLGALLLGAPVTKAIRENI 86          
BLAST of mRNA_H-paniculata_contig14436.2664.1 vs. uniprot
Match: D7FZJ7_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ7_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 4.930e-35
Identity = 69/84 (82.14%), Postives = 76/84 (90.48%), Query Frame = 1
Query:    4 SGFD-ERILVPEATDQWLWIVIVGAFGAFFAAFGIGANNVANAFATSVGAKALTIRQAVVLAGIFEFLGAVFLGSHVTKTIRKG 252
            SG + ERIL P+ T+ +LWI+IVG FGAFFAAFGIGAN+VANAFATSVGAKALT+RQAVVLAGIFEFLGAVFLGSHVT TIR G
Sbjct:    3 SGLNAERILAPDTTNGFLWILIVGTFGAFFAAFGIGANDVANAFATSVGAKALTLRQAVVLAGIFEFLGAVFLGSHVTSTIRSG 86          
BLAST of mRNA_H-paniculata_contig14436.2664.1 vs. uniprot
Match: D7FWT9_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT9_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 5.430e-33
Identity = 64/81 (79.01%), Postives = 72/81 (88.89%), Query Frame = 1
Query:   13 DERILVPEATDQWLWIVIVGAFGAFFAAFGIGANNVANAFATSVGAKALTIRQAVVLAGIFEFLGAVFLGSHVTKTIRKGI 255
            DERIL P  T ++LWIVIV + GA FAAFGIGAN++ANAFATSVGA+ALTI+QAVVLAG+FEFLGAVFLGSHV KTIR GI
Sbjct:    7 DERILAPAVTSEFLWIVIVSSIGAVFAAFGIGANDLANAFATSVGARALTIKQAVVLAGVFEFLGAVFLGSHVAKTIRSGI 87          
BLAST of mRNA_H-paniculata_contig14436.2664.1 vs. uniprot
Match: A0A6U1NDP7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NDP7_9STRA)

HSP 1 Score: 108 bits (270), Expect = 5.070e-28
Identity = 54/71 (76.06%), Postives = 61/71 (85.92%), Query Frame = 1
Query:   43 DQWLWIVIVGAFGAFFAAFGIGANNVANAFATSVGAKALTIRQAVVLAGIFEFLGAVFLGSHVTKTIRKGI 255
            D +LWIVIVG F A F A+GIGAN+VANAF+TSVGAK LT++QAV+L GIFEFLGA   GSHVTKTIRKGI
Sbjct:    7 DDYLWIVIVGGFLAVFTAYGIGANDVANAFSTSVGAKTLTLKQAVILGGIFEFLGAFLFGSHVTKTIRKGI 77          
BLAST of mRNA_H-paniculata_contig14436.2664.1 vs. uniprot
Match: A0A7S3Y1S0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1S0_HETAK)

HSP 1 Score: 104 bits (260), Expect = 2.630e-27
Identity = 57/85 (67.06%), Postives = 69/85 (81.18%), Query Frame = 1
Query:   10 FDERILVPEATDQ---WLWIVIVGAFGAFFAAFGIGANNVANAFATSVGAKALTIRQAVVLAGIFEFLGAVFLGSHVTKTIRKGI 255
            +D R+L  EAT +   +LWIV+VG F A F ++GIGAN+VANAFATSVGAK L+++ AV+LA IFEF GAV LGSHVTKTIRKGI
Sbjct:    3 YDARML--EATYEPKDYLWIVVVGGFLAVFCSYGIGANDVANAFATSVGAKTLSVKHAVILAAIFEFGGAVLLGSHVTKTIRKGI 85          
BLAST of mRNA_H-paniculata_contig14436.2664.1 vs. uniprot
Match: A0A7S2V1L4_9STRA (Phosphate transporter n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1L4_9STRA)

HSP 1 Score: 108 bits (270), Expect = 7.380e-26
Identity = 54/71 (76.06%), Postives = 61/71 (85.92%), Query Frame = 1
Query:   43 DQWLWIVIVGAFGAFFAAFGIGANNVANAFATSVGAKALTIRQAVVLAGIFEFLGAVFLGSHVTKTIRKGI 255
            D +LWIVIVG F A F A+GIGAN+VANAF+TSVGAK LT++QAV+L GIFEFLGA   GSHVTKTIRKGI
Sbjct:    7 DDYLWIVIVGGFLAVFTAYGIGANDVANAFSTSVGAKTLTLKQAVILGGIFEFLGAFLFGSHVTKTIRKGI 77          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14436.2664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIN4_9PHAE2.320e-4389.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5U7_ECTSI5.270e-4291.25High affinity phosphate transporter n=1 Tax=Ectoca... [more]
A0A6H5JNE7_9PHAE2.340e-3986.05Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7G0K9_ECTSI8.960e-3989.02Phosphate transporter n=2 Tax=Ectocarpus siliculos... [more]
D8LJQ3_ECTSI1.620e-3569.05Pho4 high affinity phosphate transporter, probable... [more]
D7FZJ7_ECTSI4.930e-3582.14Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D7FWT9_ECTSI5.430e-3379.01Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
A0A6U1NDP7_9STRA5.070e-2876.06Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3Y1S0_HETAK2.630e-2767.06Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2V1L4_9STRA7.380e-2676.06Phosphate transporter n=1 Tax=Fibrocapsa japonica ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14436contigH-paniculata_contig14436:1165..1419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.1
Seed ortholog evalue9.6e-34
Seed eggNOG ortholog2880.D7G0K8
Preferred namePHO89
KEGG koko:K01280,ko:K03306,ko:K14640
KEGG TC2.A.20,2.A.20.2
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0005215,GO:0005315,GO:0005436,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006817,GO:0006820,GO:0008150,GO:0008324,GO:0012505,GO:0015075,GO:0015077,GO:0015081,GO:0015291,GO:0015293,GO:0015294,GO:0015318,GO:0015319,GO:0015370,GO:0015672,GO:0015698,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0035435,GO:0035725,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098655,GO:0098656,GO:0098660,GO:0098661,GO:0098662
EggNOG free text desc.inorganic phosphate transmembrane transporter activity
EggNOG OGsCOG0306@1,KOG2493@2759
EC3.4.14.10
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko02000,ko03110
Exons1
Model size255
Cds size255
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929148.4715168-CDS-H-paniculata_contig14436:1164..14191622929148.4715168-CDS-H-paniculata_contig14436:1164..1419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14436 1165..1419 +
1691480750.0848794-CDS-H-paniculata_contig14436:1164..14191691480750.0848794-CDS-H-paniculata_contig14436:1164..1419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14436 1165..1419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14436.2664.1prot_H-paniculata_contig14436.2664.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14436 1165..1419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14436.2664.1

>prot_H-paniculata_contig14436.2664.1 ID=prot_H-paniculata_contig14436.2664.1|Name=mRNA_H-paniculata_contig14436.2664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
MSGFDERILVPEATDQWLWIVIVGAFGAFFAAFGIGANNVANAFATSVGA
KALTIRQAVVLAGIFEFLGAVFLGSHVTKTIRKGI
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mRNA from alignment at H-paniculata_contig14436:1165..1419+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14436.2664.1 ID=mRNA_H-paniculata_contig14436.2664.1|Name=mRNA_H-paniculata_contig14436.2664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=255bp|location=Sequence derived from alignment at H-paniculata_contig14436:1165..1419+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCGGCTTCGATGAGCGTATTCTCGTGCCTGAGGCCACCGACCAGTG GTTGTGGATCGTGATCGTCGGTGCGTTTGGTGCCTTCTTCGCTGCGTTCG GCATCGGTGCCAACAATGTTGCCAATGCTTTCGCCACCTCTGTCGGTGCG AAGGCCCTGACCATCAGGCAGGCAGTTGTCCTCGCCGGCATCTTCGAGTT CCTCGGCGCGGTGTTCTTGGGATCCCACGTGACCAAGACCATCCGCAAGG GTATC
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Coding sequence (CDS) from alignment at H-paniculata_contig14436:1165..1419+

>mRNA_H-paniculata_contig14436.2664.1 ID=mRNA_H-paniculata_contig14436.2664.1|Name=mRNA_H-paniculata_contig14436.2664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig14436:1165..1419+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCGGCTTCGATGAGCGTATTCTCGTGCCTGAGGCCACCGACCAGTG
GTTGTGGATCGTGATCGTCGGTGCGTTTGGTGCCTTCTTCGCTGCGTTCG
GCATCGGTGCCAACAATGTTGCCAATGCTTTCGCCACCTCTGTCGGTGCG
AAGGCCCTGACCATCAGGCAGGCAGTTGTCCTCGCCGGCATCTTCGAGTT
CCTCGGCGCGGTGTTCTTGGGATCCCACGTGACCAAGACCATCCGCAAGG
GTATCATGAGCGGCTTCGATGAGCGTATTCTCGTGCCTGAGGCCACCGAC
CAGTGGTTGTGGATCGTGATCGTCGGTGCGTTTGGTGCCTTCTTCGCTGC
GTTCGGCATCGGTGCCAACAATGTTGCCAATGCTTTCGCCACCTCTGTCG
GTGCGAAGGCCCTGACCATCAGGCAGGCAGTTGTCCTCGCCGGCATCTTC
GAGTTCCTCGGCGCGGTGTTCTTGGGATCCCACGTGACCAAGACCATCCG
CAAGGGTATC
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