prot_H-paniculata_contig14371.2628.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig14371.2628.1
Unique Name	prot_H-paniculata_contig14371.2628.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	140

Homology

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BLAST of mRNA_H-paniculata_contig14371.2628.1 vs. uniprot
Match: D8LE80_ECTSI (60S ribosomal protein L41 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE80_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 2.950e-42
Identity = 87/100 (87.00%), Postives = 94/100 (94.00%), Query Frame = 0

Query:   40 MQIFVKTLGGASLPLEVTPSTSISAVKAAVEAQEFLPVALMRLNHGGMQLNTGLLADAGIEEADTLTLLFNINGGMRAKWRKKRXXXXXXXXXXXRQRAR 139
            MQIFVKTLGGASLPLEV+P+TSI+AVKAAVEAQEFLP ALMRLNHG  QL++G LADAGIEEADTLTLL ++ GGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRXXXXXXXXXXXRQRAR 100

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BLAST of mRNA_H-paniculata_contig14371.2628.1 vs. uniprot
Match: A0A836CFJ6_9STRA (60S ribosomal protein L41 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFJ6_9STRA)

HSP 1 Score: 100 bits (250), Expect = 4.400e-25
Identity = 70/101 (69.31%), Postives = 80/101 (79.21%), Query Frame = 0

Query:   40 MQIFVKTLGGASLPLEVTPSTSISAVKAAVEAQEFLPVALMRLNHGGMQL-NTGLLADAGIEEADTLTLLFNINGGMRAKWRKKRXXXXXXXXXXXRQRAR 139
            MQIFVKTL   SL L+V P++++  V A VE +EFLP AL RL+ G  QL +T  L  AGIEEADTLTLL ++NGGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:    1 MQIFVKTLARDSLVLDVAPTSTVGDVMAMVEDREFLPAALQRLSCGSTQLASTTTLEAAGIEEADTLTLLLSVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 101

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BLAST of mRNA_H-paniculata_contig14371.2628.1 vs. uniprot
Match: A0A8K1CA19_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CA19_PYTOL)

HSP 1 Score: 90.1 bits (222), Expect = 6.980e-21
Identity = 62/100 (62.00%), Postives = 74/100 (74.00%), Query Frame = 0

Query:   40 MQIFVKTLGGASLPLEVTPSTSISAVKAAVEAQEFLPVALMRLNHGGMQLNTGLLADAGIEEADTLTLLFNINGGMRAKWRKKRXXXXXXXXXXXRQRAR 139
            MQ+FV+TL GA L L V    S+++VK  +E  EF+     RL   G QL TG LAD G+EEA TL +L+++NGGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:    1 MQLFVETLSGAPLTLSVAADASVASVKQMIENHEFMSG--FRLVCAGKQLETGSLADYGVEEAGTLKMLYSLNGGMRAKWRKKRXXXXXXXXXXXRQRAR 98

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BLAST of mRNA_H-paniculata_contig14371.2628.1 vs. uniprot
Match: A0A0H5RDB8_9EUKA (60S ribosomal protein L41 (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RDB8_9EUKA)

HSP 1 Score: 87.8 bits (216), Expect = 1.080e-19
Identity = 63/100 (63.00%), Postives = 73/100 (73.00%), Query Frame = 0

Query:   40 MQIFVKTLGGASLPLEVTPSTSISAVKAAVEAQEFLPVALMRLNHGGMQLNTGLLADAGIEEADTLTLLFNINGGMRAKWRKKRXXXXXXXXXXXRQRAR 139
            MQIFV+TL GA L L V    S+++VK  VE  EF  ++  RL   G QL +G LAD G+ EADTL +L  +NGGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:   25 MQIFVETLSGAPLKLSVASDASVASVKQMVEDYEF--ISGFRLVCAGKQLESGSLADYGVAEADTLKMLLFVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 122

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BLAST of mRNA_H-paniculata_contig14371.2628.1 vs. uniprot
Match: A0A7S4DB66_HETAK (60S ribosomal protein L41 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB66_HETAK)

HSP 1 Score: 84.0 bits (206), Expect = 1.920e-18
Identity = 59/100 (59.00%), Postives = 68/100 (68.00%), Query Frame = 0

Query:   40 MQIFVKTLGGASLPLEVTPSTSISAVKAAVEAQEFLPVALMRLNHGGMQLNTGLLADAGIEEADTLTLLFNINGGMRAKWRKKRXXXXXXXXXXXRQRAR 139
            MQIFVK   G S    V+   S+    A VE Q FLP  L+R      QL TG LAD G+EE  T+++L ++NGGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:    1 MQIFVKDPSGRSTAYTVSKDASVEGFNAQVENQTFLPADLVRFVCESKQLTTGSLADFGVEEGVTISMLLHVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 100

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BLAST of mRNA_H-paniculata_contig14371.2628.1 vs. uniprot
Match: D0NRK6_PHYIT (60S ribosomal protein L41 n=7 Tax=Peronosporaceae TaxID=4777 RepID=D0NRK6_PHYIT)

HSP 1 Score: 84.0 bits (206), Expect = 2.320e-18
Identity = 60/103 (58.25%), Postives = 73/103 (70.87%), Query Frame = 0

Query:   37 EANMQIFVKTLGGASLPLEVTPSTSISAVKAAVEAQEFLPVALMRLNHGGMQLNTGLLADAGIEEADTLTLLFNINGGMRAKWRKKRXXXXXXXXXXXRQRAR 139
            E  MQ+FV+TL G+ L L V    S+++VK AVE  E++     RL   G QL +G LAD  + E DTL +L ++NGGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:    7 EGIMQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIQN--FRLVCAGKQLTSGSLADYAVGECDTLKMLLSVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 107

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BLAST of mRNA_H-paniculata_contig14371.2628.1 vs. uniprot
Match: A0A833WDI0_PHYIN (60S ribosomal protein L41 n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WDI0_PHYIN)

HSP 1 Score: 84.7 bits (208), Expect = 3.130e-18
Identity = 60/103 (58.25%), Postives = 73/103 (70.87%), Query Frame = 0

Query:   37 EANMQIFVKTLGGASLPLEVTPSTSISAVKAAVEAQEFLPVALMRLNHGGMQLNTGLLADAGIEEADTLTLLFNINGGMRAKWRKKRXXXXXXXXXXXRQRAR 139
            E  MQ+FV+TL G+ L L V    S+++VK AVE  E++     RL   G QL +G LAD  + E DTL +L ++NGGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:   45 EGIMQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIQN--FRLVSAGKQLTSGSLADYAVGECDTLKMLLSVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 145

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BLAST of mRNA_H-paniculata_contig14371.2628.1 vs. uniprot
Match: V9EKG6_PHYPR (60S ribosomal protein L41 n=3 Tax=Phytophthora TaxID=4783 RepID=V9EKG6_PHYPR)

HSP 1 Score: 83.2 bits (204), Expect = 3.650e-18
Identity = 59/100 (59.00%), Postives = 72/100 (72.00%), Query Frame = 0

Query:   40 MQIFVKTLGGASLPLEVTPSTSISAVKAAVEAQEFLPVALMRLNHGGMQLNTGLLADAGIEEADTLTLLFNINGGMRAKWRKKRXXXXXXXXXXXRQRAR 139
            MQ+FV+TL G+ L L V    S+++VK AVE  E++     RL   G QL +G LAD  + E DTL +L ++NGGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:    1 MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIQN--FRLVCAGKQLTSGSLADYAVGECDTLKMLLSVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 98

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BLAST of mRNA_H-paniculata_contig14371.2628.1 vs. uniprot
Match: A0A7S4T8Y9_9STRA (60S ribosomal protein L41 n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T8Y9_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.120e-18
Identity = 58/101 (57.43%), Postives = 70/101 (69.31%), Query Frame = 0

Query:   39 NMQIFVKTLGGASLPLEVTPSTSISAVKAAVEAQEFLPVALMRLNHGGMQLNTGLLADAGIEEADTLTLLFNINGGMRAKWRKKRXXXXXXXXXXXRQRAR 139
            NMQIF+    G S    V    SI +VKA +E +EF+P  L+RL +G   L  G L   G++E DT+T+L  +NGGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:   88 NMQIFIAGAQGPSTAYTVDSDASIESVKAMIENKEFVPADLIRLVNGASVLEGGSLLGNGVQEDDTITMLLEVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 188

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BLAST of mRNA_H-paniculata_contig14371.2628.1 vs. uniprot
Match: A0A7S2HF29_9STRA (60S ribosomal protein L41 n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HF29_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 7.710e-18
Identity = 56/100 (56.00%), Postives = 69/100 (69.00%), Query Frame = 0

Query:   40 MQIFVKTLGGASLPLEVTPSTSISAVKAAVEAQEFLPVALMRLNHGGMQLNTGLLADAGIEEADTLTLLFNINGGMRAKWRKKRXXXXXXXXXXXRQRAR 139
            MQIF+    G S    V    S+ +VKA +E +EF+P  L+RL +G   L  G L   G++E DT+T+L  +NGGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct:    1 MQIFIAGAQGPSTAYTVDSDASVESVKAMIENREFVPSELIRLVNGATALEGGSLLGNGVQEDDTITMLLEVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 100

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig14371.2628.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig14371.2628.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LE80_ECTSI	2.950e-42	87.00	60S ribosomal protein L41 n=2 Tax=Ectocarpus TaxID...	[more]
A0A836CFJ6_9STRA	4.400e-25	69.31	60S ribosomal protein L41 n=1 Tax=Tribonema minus ...	[more]
A0A8K1CA19_PYTOL	6.980e-21	62.00	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A0H5RDB8_9EUKA	1.080e-19	63.00	60S ribosomal protein L41 (Fragment) n=1 Tax=Spong...	[more]
A0A7S4DB66_HETAK	1.920e-18	59.00	60S ribosomal protein L41 n=1 Tax=Heterosigma akas...	[more]
D0NRK6_PHYIT	2.320e-18	58.25	60S ribosomal protein L41 n=7 Tax=Peronosporaceae ...	[more]
A0A833WDI0_PHYIN	3.130e-18	58.25	60S ribosomal protein L41 n=2 Tax=Phytophthora inf...	[more]
V9EKG6_PHYPR	3.650e-18	59.00	60S ribosomal protein L41 n=3 Tax=Phytophthora Tax...	[more]
A0A7S4T8Y9_9STRA	6.120e-18	57.43	60S ribosomal protein L41 n=3 Tax=Ditylum brightwe...	[more]
A0A7S2HF29_9STRA	7.710e-18	56.00	60S ribosomal protein L41 n=1 Tax=Helicotheca tame...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000626	Ubiquitin domain	SMART	SM00213	ubq_7	coord: 40..110 e-value: 8.4E-10 score: 48.6
IPR000626	Ubiquitin domain	PFAM	PF00240	ubiquitin	coord: 42..109 e-value: 2.8E-10 score: 39.8
IPR000626	Ubiquitin domain	PROSITE	PS50053	UBIQUITIN_2	coord: 40..114 score: 15.667
IPR007836	Ribosomal protein L41	PFAM	PF05162	Ribosomal_L41	coord: 115..137 e-value: 1.3E-7 score: 31.6
None	No IPR available	GENE3D	3.10.20.90		coord: 32..138 e-value: 2.7E-18 score: 67.5
None	No IPR available	PANTHER	PTHR10666:SF268	UBIQUITIN-60S RIBOSOMAL PROTEIN L40	coord: 30..128
None	No IPR available	PANTHER	PTHR10666	UBIQUITIN	coord: 30..128
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 36..115

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig14371	contig	H-paniculata_contig14371:701..3115 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig14371.2628.1	mRNA_H-paniculata_contig14371.2628.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig14371 184..3367 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig14371.2628.1 ID=prot_H-paniculata_contig14371.2628.1|Name=mRNA_H-paniculata_contig14371.2628.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
MIPLTNIRYAPSPNRPLQRQHGQSKLIIGHEALEHPEANMQIFVKTLGGA
SLPLEVTPSTSISAVKAAVEAQEFLPVALMRLNHGGMQLNTGLLADAGIE
EADTLTLLFNINGGMRAKWRKKRMRRLRRKRRKMRQRAR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000626	Ubiquitin_dom
IPR007836	Ribosomal_L41
IPR029071	Ubiquitin-like_domsf