mRNA_H-paniculata_contig14371.2628.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14371.2628.1
Unique NamemRNA_H-paniculata_contig14371.2628.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14371.2628.1 vs. uniprot
Match: D8LE80_ECTSI (60S ribosomal protein L41 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE80_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 1.100e-38
Identity = 86/100 (86.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:  370 MQIFVKTLGGASLPLEVTPSTSISAVKAAVEAQEFLPVALMRLNHGGMQLNTGLLADAGIEEADTLTLLFNINGGMRAKWRKKRXXXXXXXXXXXXQRAR 669
            MQIFVKTLGGASLPLEV+P+TSI+AVKAAVEAQEFLP ALMRLNHG  QL++G LADAGIEEADTLTLL ++ GGMRAKWRKKRXXXXXXXXXXX QRAR
Sbjct:    1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
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BLAST of mRNA_H-paniculata_contig14371.2628.1 vs. uniprot
Match: A0A836CFJ6_9STRA (60S ribosomal protein L41 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFJ6_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.070e-22
Identity = 69/101 (68.32%), Postives = 79/101 (78.22%), Query Frame = 1 
Query:  370 MQIFVKTLGGASLPLEVTPSTSISAVKAAVEAQEFLPVALMRLNHGGMQL-NTGLLADAGIEEADTLTLLFNINGGMRAKWRKKRXXXXXXXXXXXXQRAR 669
            MQIFVKTL   SL L+V P++++  V A VE +EFLP AL RL+ G  QL +T  L  AGIEEADTLTLL ++NGGMRAKWRKKRXXXXXXXXXXX QRAR
Sbjct:    1 MQIFVKTLARDSLVLDVAPTSTVGDVMAMVEDREFLPAALQRLSCGSTQLASTTTLEAAGIEEADTLTLLLSVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 101
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BLAST of mRNA_H-paniculata_contig14371.2628.1 vs. uniprot
Match: A0A8K1CA19_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CA19_PYTOL)

HSP 1 Score: 89.4 bits (220), Expect = 2.600e-18
Identity = 61/100 (61.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:  370 MQIFVKTLGGASLPLEVTPSTSISAVKAAVEAQEFLPVALMRLNHGGMQLNTGLLADAGIEEADTLTLLFNINGGMRAKWRKKRXXXXXXXXXXXXQRAR 669
            MQ+FV+TL GA L L V    S+++VK  +E  EF+     RL   G QL TG LAD G+EEA TL +L+++NGGMRAKWRKKRXXXXXXXXXXX QRAR
Sbjct:    1 MQLFVETLSGAPLTLSVAADASVASVKQMIENHEFMSG--FRLVCAGKQLETGSLADYGVEEAGTLKMLYSLNGGMRAKWRKKRXXXXXXXXXXXRQRAR 98
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BLAST of mRNA_H-paniculata_contig14371.2628.1 vs. uniprot
Match: A0A0H5RDB8_9EUKA (60S ribosomal protein L41 (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RDB8_9EUKA)

HSP 1 Score: 87.0 bits (214), Expect = 3.490e-17
Identity = 62/100 (62.00%), Postives = 72/100 (72.00%), Query Frame = 1 
Query:  370 MQIFVKTLGGASLPLEVTPSTSISAVKAAVEAQEFLPVALMRLNHGGMQLNTGLLADAGIEEADTLTLLFNINGGMRAKWRKKRXXXXXXXXXXXXQRAR 669
            MQIFV+TL GA L L V    S+++VK  VE  EF  ++  RL   G QL +G LAD G+ EADTL +L  +NGGMRAKWRKKRXXXXXXXXXXX QRAR
Sbjct:   25 MQIFVETLSGAPLKLSVASDASVASVKQMVEDYEF--ISGFRLVCAGKQLESGSLADYGVAEADTLKMLLFVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 122
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BLAST of mRNA_H-paniculata_contig14371.2628.1 vs. uniprot
Match: A0A7S4DB66_HETAK (60S ribosomal protein L41 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB66_HETAK)

HSP 1 Score: 83.2 bits (204), Expect = 4.770e-16
Identity = 58/100 (58.00%), Postives = 67/100 (67.00%), Query Frame = 1 
Query:  370 MQIFVKTLGGASLPLEVTPSTSISAVKAAVEAQEFLPVALMRLNHGGMQLNTGLLADAGIEEADTLTLLFNINGGMRAKWRKKRXXXXXXXXXXXXQRAR 669
            MQIFVK   G S    V+   S+    A VE Q FLP  L+R      QL TG LAD G+EE  T+++L ++NGGMRAKWRKKRXXXXXXXXXXX QRAR
Sbjct:    1 MQIFVKDPSGRSTAYTVSKDASVEGFNAQVENQTFLPADLVRFVCESKQLTTGSLADFGVEEGVTISMLLHVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
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BLAST of mRNA_H-paniculata_contig14371.2628.1 vs. uniprot
Match: D0NRK6_PHYIT (60S ribosomal protein L41 n=7 Tax=Peronosporaceae TaxID=4777 RepID=D0NRK6_PHYIT)

HSP 1 Score: 83.2 bits (204), Expect = 5.780e-16
Identity = 59/103 (57.28%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:  361 EANMQIFVKTLGGASLPLEVTPSTSISAVKAAVEAQEFLPVALMRLNHGGMQLNTGLLADAGIEEADTLTLLFNINGGMRAKWRKKRXXXXXXXXXXXXQRAR 669
            E  MQ+FV+TL G+ L L V    S+++VK AVE  E++     RL   G QL +G LAD  + E DTL +L ++NGGMRAKWRKKRXXXXXXXXXXX QRAR
Sbjct:    7 EGIMQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIQN--FRLVCAGKQLTSGSLADYAVGECDTLKMLLSVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 107
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BLAST of mRNA_H-paniculata_contig14371.2628.1 vs. uniprot
Match: A0A833WDI0_PHYIN (60S ribosomal protein L41 n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WDI0_PHYIN)

HSP 1 Score: 84.0 bits (206), Expect = 8.310e-16
Identity = 59/103 (57.28%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:  361 EANMQIFVKTLGGASLPLEVTPSTSISAVKAAVEAQEFLPVALMRLNHGGMQLNTGLLADAGIEEADTLTLLFNINGGMRAKWRKKRXXXXXXXXXXXXQRAR 669
            E  MQ+FV+TL G+ L L V    S+++VK AVE  E++     RL   G QL +G LAD  + E DTL +L ++NGGMRAKWRKKRXXXXXXXXXXX QRAR
Sbjct:   45 EGIMQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIQN--FRLVSAGKQLTSGSLADYAVGECDTLKMLLSVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 145
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BLAST of mRNA_H-paniculata_contig14371.2628.1 vs. uniprot
Match: V9EKG6_PHYPR (60S ribosomal protein L41 n=3 Tax=Phytophthora TaxID=4783 RepID=V9EKG6_PHYPR)

HSP 1 Score: 82.4 bits (202), Expect = 8.590e-16
Identity = 58/100 (58.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:  370 MQIFVKTLGGASLPLEVTPSTSISAVKAAVEAQEFLPVALMRLNHGGMQLNTGLLADAGIEEADTLTLLFNINGGMRAKWRKKRXXXXXXXXXXXXQRAR 669
            MQ+FV+TL G+ L L V    S+++VK AVE  E++     RL   G QL +G LAD  + E DTL +L ++NGGMRAKWRKKRXXXXXXXXXXX QRAR
Sbjct:    1 MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIQN--FRLVCAGKQLTSGSLADYAVGECDTLKMLLSVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 98
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BLAST of mRNA_H-paniculata_contig14371.2628.1 vs. uniprot
Match: A0A7S4T8Y9_9STRA (60S ribosomal protein L41 n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T8Y9_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.690e-15
Identity = 57/101 (56.44%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:  367 NMQIFVKTLGGASLPLEVTPSTSISAVKAAVEAQEFLPVALMRLNHGGMQLNTGLLADAGIEEADTLTLLFNINGGMRAKWRKKRXXXXXXXXXXXXQRAR 669
            NMQIF+    G S    V    SI +VKA +E +EF+P  L+RL +G   L  G L   G++E DT+T+L  +NGGMRAKWRKKRXXXXXXXXXXX QRAR
Sbjct:   88 NMQIFIAGAQGPSTAYTVDSDASIESVKAMIENKEFVPADLIRLVNGASVLEGGSLLGNGVQEDDTITMLLEVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 188
[Close]
BLAST of mRNA_H-paniculata_contig14371.2628.1 vs. uniprot
Match: A0A7S2HF29_9STRA (60S ribosomal protein L41 n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HF29_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.720e-15
Identity = 55/100 (55.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:  370 MQIFVKTLGGASLPLEVTPSTSISAVKAAVEAQEFLPVALMRLNHGGMQLNTGLLADAGIEEADTLTLLFNINGGMRAKWRKKRXXXXXXXXXXXXQRAR 669
            MQIF+    G S    V    S+ +VKA +E +EF+P  L+RL +G   L  G L   G++E DT+T+L  +NGGMRAKWRKKRXXXXXXXXXXX QRAR
Sbjct:    1 MQIFIAGAQGPSTAYTVDSDASVESVKAMIENREFVPSELIRLVNGATALEGGSLLGNGVQEDDTITMLLEVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14371.2628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE80_ECTSI1.100e-3886.0060S ribosomal protein L41 n=2 Tax=Ectocarpus TaxID... [more]
A0A836CFJ6_9STRA3.070e-2268.3260S ribosomal protein L41 n=1 Tax=Tribonema minus ... [more]
A0A8K1CA19_PYTOL2.600e-1861.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0H5RDB8_9EUKA3.490e-1762.0060S ribosomal protein L41 (Fragment) n=1 Tax=Spong... [more]
A0A7S4DB66_HETAK4.770e-1658.0060S ribosomal protein L41 n=1 Tax=Heterosigma akas... [more]
D0NRK6_PHYIT5.780e-1657.2860S ribosomal protein L41 n=7 Tax=Peronosporaceae ... [more]
A0A833WDI0_PHYIN8.310e-1657.2860S ribosomal protein L41 n=2 Tax=Phytophthora inf... [more]
V9EKG6_PHYPR8.590e-1658.0060S ribosomal protein L41 n=3 Tax=Phytophthora Tax... [more]
A0A7S4T8Y9_9STRA1.690e-1556.4460S ribosomal protein L41 n=3 Tax=Ditylum brightwe... [more]
A0A7S2HF29_9STRA1.720e-1555.0060S ribosomal protein L41 n=1 Tax=Helicotheca tame... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14371contigH-paniculata_contig14371:184..3367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.6
Seed ortholog evalue1.8e-32
Seed eggNOG ortholog2880.D8LE80
Preferred nameUBB
KEGG koko:K02927,ko:K02977,ko:K04551,ko:K08770
KEGG Pathwayko03010,ko03320,ko04137,ko04144,ko05012,ko05167,map03010,map03320,map04137,map04144,map05012,map05167
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000165,GO:0000187,GO:0000209,GO:0000715,GO:0000731,GO:0000902,GO:0001666,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002224,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002753,GO:0002755,GO:0002756,GO:0002757,GO:0002758,GO:0002764,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005768,GO:0005783,GO:0005789,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006294,GO:0006296,GO:0006297,GO:0006301,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006508,GO:0006511,GO:0006605,GO:0006625,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006928,GO:0006950,GO:0006974,GO:0006996,GO:0007017,GO:0007018,GO:0007031,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0007179,GO:0007249,GO:0007254,GO:0007267,GO:0007275,GO:0007399,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009628,GO:0009653,GO:0009719,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010008,GO:0010033,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0010942,GO:0010970,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016055,GO:0016192,GO:0016197,GO:0016310,GO:0016567,GO:0016579,GO:0017015,GO:0018130,GO:0019058,GO:0019068,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0019438,GO:0019538,GO:0019867,GO:0019941,GO:0019985,GO:0022008,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030030,GO:0030139,GO:0030154,GO:0030162,GO:0030163,GO:0030182,GO:0030512,GO:0030522,GO:0030659,GO:0030666,GO:0030705,GO:0031090,GO:0031098,GO:0031145,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031347,GO:0031349,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031410,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0031984,GO:0032147,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0033036,GO:0033365,GO:0033554,GO:0033674,GO:0033683,GO:0034097,GO:0034613,GO:0034622,GO:0034641,GO:0034643,GO:0034645,GO:0034654,GO:0035556,GO:0035666,GO:0035872,GO:0036211,GO:0036293,GO:0036294,GO:0036297,GO:0036477,GO:0042175,GO:0042176,GO:0042221,GO:0042276,GO:0042325,GO:0042327,GO:0042391,GO:0042769,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043025,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043487,GO:0043488,GO:0043549,GO:0043574,GO:0043618,GO:0043620,GO:0043632,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044297,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044432,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044766,GO:0045088,GO:0045089,GO:0045184,GO:0045859,GO:0045860,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045937,GO:0045944,GO:0046483,GO:0046794,GO:0046907,GO:0047497,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048666,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051338,GO:0051347,GO:0051403,GO:0051603,GO:0051606,GO:0051640,GO:0051641,GO:0051646,GO:0051649,GO:0051654,GO:0051656,GO:0051704,GO:0051716,GO:0051881,GO:0055085,GO:0060255,GO:0060548,GO:0061013,GO:0061024,GO:0061136,GO:0061418,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070423,GO:0070482,GO:0070498,GO:0070555,GO:0070646,GO:0070647,GO:0070727,GO:0070848,GO:0070887,GO:0070911,GO:0070987,GO:0071310,GO:0071345,GO:0071347,GO:0071363,GO:0071453,GO:0071456,GO:0071495,GO:0071559,GO:0071560,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0071897,GO:0071900,GO:0071902,GO:0071944,GO:0072384,GO:0072594,GO:0072662,GO:0072663,GO:0075733,GO:0080090,GO:0080134,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090304,GO:0090305,GO:0097458,GO:0097708,GO:0098588,GO:0098805,GO:0098827,GO:0099111,GO:0120025,GO:0120036,GO:0120039,GO:0198738,GO:1901214,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901796,GO:1901798,GO:1902253,GO:1902255,GO:1902525,GO:1902527,GO:1902531,GO:1902533,GO:1902579,GO:1902679,GO:1902680,GO:1903050,GO:1903311,GO:1903320,GO:1903322,GO:1903362,GO:1903506,GO:1903507,GO:1903508,GO:1903844,GO:1903845,GO:1905114,GO:2000112,GO:2000113,GO:2001141,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.ubiquitin
EggNOG OGsCOG5272@1,KOG0001@2759
Ec32 ortholog descriptionRibosomal protein L41
Ec32 orthologEc-00_001240.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121,ko04147
Exons2
Model size1189
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14371.2628.1prot_H-paniculata_contig14371.2628.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14371 701..3115 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929143.44781-UTR-H-paniculata_contig14371:183..7001622929143.44781-UTR-H-paniculata_contig14371:183..700Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14371 184..700 -
1691480748.1200342-UTR-H-paniculata_contig14371:183..7001691480748.1200342-UTR-H-paniculata_contig14371:183..700Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14371 184..700 -
1622929143.4868026-UTR-H-paniculata_contig14371:3115..33671622929143.4868026-UTR-H-paniculata_contig14371:3115..3367Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14371 3116..3367 -
1691480748.1543872-UTR-H-paniculata_contig14371:3115..33671691480748.1543872-UTR-H-paniculata_contig14371:3115..3367Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14371 3116..3367 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929143.462254-CDS-H-paniculata_contig14371:700..10271622929143.462254-CDS-H-paniculata_contig14371:700..1027Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14371 701..1027 -
1691480748.1375518-CDS-H-paniculata_contig14371:700..10271691480748.1375518-CDS-H-paniculata_contig14371:700..1027Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14371 701..1027 -
1622929143.4753869-CDS-H-paniculata_contig14371:3022..31151622929143.4753869-CDS-H-paniculata_contig14371:3022..3115Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14371 3023..3115 -
1691480748.1459181-CDS-H-paniculata_contig14371:3022..31151691480748.1459181-CDS-H-paniculata_contig14371:3022..3115Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14371 3023..3115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14371.2628.1

>prot_H-paniculata_contig14371.2628.1 ID=prot_H-paniculata_contig14371.2628.1|Name=mRNA_H-paniculata_contig14371.2628.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
MIPLTNIRYAPSPNRPLQRQHGQSKLIIGHEALEHPEANMQIFVKTLGGA
SLPLEVTPSTSISAVKAAVEAQEFLPVALMRLNHGGMQLNTGLLADAGIE
EADTLTLLFNINGGMRAKWRKKRMRRLRRKRRKMRQRAR*
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mRNA from alignment at H-paniculata_contig14371:184..3367-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14371.2628.1 ID=mRNA_H-paniculata_contig14371.2628.1|Name=mRNA_H-paniculata_contig14371.2628.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3184bp|location=Sequence derived from alignment at H-paniculata_contig14371:184..3367- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCACAACAGCTACGTTGTAGCCGTTCGGTGTACAGCGGCATTTGGTTC
TAGTGTAATACTGACTGCAACGTTCCCGCCATGTTCGGTGTTCGTAGTTG
CTCCGATTGTGGCCGACTCATTCAAACTTGAATTTGAATGTAAAACGGTC
ACATTAACAGTACATCATACTCGTATACACGTCGAGACTCCCCAACAGCA
GCCCAGATTTAACAACCTACGAAGGCAAGCCAATAGAGGCAAGTCCTGAC
ACATGATCCCCTTGACGAACATCAGGTATGCACCATCACCGAACCGCCCC
CTCCAAAGGCAACATGGACAATCGAAGCTGATCATAGGACACGAGGTAAG
AATATCAGCAGCAGCACAGAGATATCATGCTCGAGAGACAGTCAGTACAC
ATGCCACACACGCGTCCAGAGCATCACCCCAACAACAATAGCTCAAATTT
CATAAGCAATCAATAGAAGACAATCAAAGTAAGAAAATCAAGTCAAGCCT
TCTGCGTTGCAACTACCTACCCGATATTGCATAAGCCACGCGCCAGCTGC
CGAATGCATTCTCCTGGTTCCACGGGATCGCCAATTCGCGTTCTGTGTAG
GGGCATGATCGTGACAATGGCAACGATGATGAGGCTGAGCGTAATTCGGC
GGCAAATAAGCAGATCGGGACTCCCAAAGCAACTTTGAAGGTGCCCATGC
CACCGATGTGGGAGAAAAGCCAAGCATAGAAGCCATTGCTGCATGAGTTT
TTCGCCTCATCGGACGACGATGGCACCAGCACCGGTCTCCGATCTGTCAG
GTTAGACTGAACTGCTACGCCCCCTACGTAATAGTCATCCCTAAAATACA
TCCCCTAATTGATACCGCCTCCTTAGGTATTTGTTGGTCTGAAATAGAGC
CTACCCCCTTTCCTATTACTCTGCTGACTGCTCAGCTGGTCCGCGAACCG
GTGAGTGACTTCAAGGACAACCTCTGCTGCATGAAACGCCCATATTCCCT
GAACAAATACTATGCGGGATGTAGCTGTGTTTCTGTGGTGGGATAGAGGG
GGGGTGAACGTCGTTGGGTATGATTGTATGTGGTTGAAATGAAGTGAAAA
CGCGACCTCTGTGTGGCCCTGGATGTCTGTATGTCTGTTGGGAAGCACTT
GTTCTTGCGCTGCTGATGGTGCTGCATGGATTGTGTGACAAATGACAGCG
ACATTGCTGTATCCTTCTGGTGTAGGGTTGTGTCACCATCTCACTGTACA
TTGGATGCTTCAACACGTGATGGTCTGAAAGACGAACCGAAAACCCACCC
ACCAATAGGTCACATACCAAAGTTGAGCAATGCAGGTGGTCGTCAACGTA
CACTGTCGGCGGTTTCTAGTTATGGCCGTCCTTGGGGTGTAGCTGTTTTT
GACCTTTGCGTATTTGAGAGGAATATTGTTCATCAGTCGGGGTTTACCGG
TATGCCTTGTTTTACATTAAGAAGTCAGTTTGTAGGTATAGACCCGCGCG
GTATGTGAATAGTTGGAACACTTGCGCACAACCGTTGACTAATTGGTGAT
CTTGAATAAATAATCACGATGTGTTGTGATCATGGAACTCCTAGGGAACA
GGAGTAATAGATGACGGGGACATGGTACCGTGACATGACTGAAGTCCGGT
CAACATGAGCAGCAGTCAGTAGCTGGTGGCCCTGCACTTCAACATATCAA
ACCATGGAGCCCTAGCTTGTTTGTGTTGACAATATATAATGTATGCTAAG
GGATACAAAGAGGAGCCATTGAAAGTGAACATGCCTACCTCTTGAGACAG
ATTGAAGTCGCCGCGGTCGATTAAACGAATCGACCGGCAAATGGGTCCAT
CAAGCTGAGAAATGTTTTTTTTATCCTTCTGAAGATGCGTTTTGTAGACC
ATGTGGACATGTCGCAACAGTGGGATGTTCATGTGTTAACTAATACTCGC
GTACATTTGCGGTGTATGAGGCCCTTGTAGCTTTTTTCTAATTACGTACT
GATTTTTGGAGTATTATGCGACGAAAAACCTTTTGGGATGTGTTTGTTGC
AGAACTATATTCCTCCGCAATATGTCGGTATGAGGTTTATTTTCAAATAT
TACGTGTAAATAAACGTTCTCATCTGTTTCCTGTCGAATGTTTCGGGGAA
ATTATTCAGTTACATACATCTAGCCTACTGGAGCTGGTGGGAAAACCCAC
CAAAGCAGGACGGCATGAGATTCTTGTGATCAAAACATCCATAGTTTGAT
TTGTACTGGTGGTGTACTTGGAATCGTGGTGACCCCCTCTCGACAATTAT
TGTTGCGGTTTGTGATCCGTTATTTTTCCTACCTTGACAGGCTTTGGAGC
ATCCAGAGGCTAACATGCAGATCTTCGTGAAAACCCTCGGCGGGGCGAGC
CTCCCTCTGGAGGTGACCCCTTCCACATCTATCAGCGCGGTCAAGGCTGC
GGTGGAGGCCCAAGAGTTTCTACCGGTTGCCCTGATGCGCCTGAACCATG
GCGGCATGCAGCTCAACACCGGGTTGCTCGCCGACGCTGGCATTGAAGAA
GCCGACACCTTGACGCTGCTCTTCAATATCAATGGTGGCATGCGCGCCAA
GTGGCGTAAGAAGCGTATGCGCCGCCTGAGGCGCAAGCGCCGTAAGATGC
GTCAGCGTGCCCGTTAAGCTTGATTTCTTTCGCTACTCACAGCGGCGCTT
CGGGCAGGTTGGACGTTAGTTGGGAGTATCAGTGGCGGTCGTCGTATTCC
GCATTTTCCAACATCCTGTTACGTCGTGATGGATTGAACTCAAGTTGATG
GGAATTTCCTTTCTCTTCTGAGTTTATGAGGGGCGGTAGATGCAAGTGAA
GAATGGTGTCTTATGTTGACTATTTGAGTATTGGATTTGACTCGTGGGGG
AAGGCCTCTGGTTGCTGAGAAGGGCGCGGTGAAGAGGGTAGCGGGGGTGT
TGGTGACCTGCGGGCGTTTCCGTTATGAAAATGAGTTGATTGCTGTAGAC
ACGTGTTCGACACCTGGATAAAAAAAAACGTTAATATTTCTCATCCTTGG
ACAAATGACTACTGTATGATGCTAATTCTTGAAACATGGCTGCGGCTAAT
GATATGCCAATATCCATGTTTGAAAACTTCGTTCGGCGCTTTGTCAAAGA
CTATGCCGAAATCACTGCACCGCTTGTAGCACTT
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Coding sequence (CDS) from alignment at H-paniculata_contig14371:184..3367-

>mRNA_H-paniculata_contig14371.2628.1 ID=mRNA_H-paniculata_contig14371.2628.1|Name=mRNA_H-paniculata_contig14371.2628.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig14371:184..3367- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCCCCTTGACGAACATCAGGTATGCACCATCACCGAACCGCCCCCT
CCAAAGGCAACATGGACAATCGAAGCTGATCATAGGACACGAGATGATCC
CCTTGACGAACATCAGGTATGCACCATCACCGAACCGCCCCCTCCAAAGG
CAACATGGACAATCGAAGCTGATCATAGGACACGAGGCTTTGGAGCATCC
AGAGGCTAACATGCAGATCTTCGTGAAAACCCTCGGCGGGGCGAGCCTCC
CTCTGGAGGTGACCCCTTCCACATCTATCAGCGCGGTCAAGGCTGCGGTG
GAGGCCCAAGAGTTTCTACCGGTTGCCCTGATGCGCCTGAACCATGGCGG
CATGCAGCTCAACACCGGGTTGCTCGCCGACGCTGGCATTGAAGAAGCCG
ACACCTTGACGCTGCTCTTCAATATCAATGGTGGCATGCGCGCCAAGTGG
CGTAAGAAGCGTATGCGCCGCCTGAGGCGCAAGCGCCGTAAGATGCGTCA
GCGTGCCCGTTAAGCTTTGGAGCATCCAGAGGCTAACATGCAGATCTTCG
TGAAAACCCTCGGCGGGGCGAGCCTCCCTCTGGAGGTGACCCCTTCCACA
TCTATCAGCGCGGTCAAGGCTGCGGTGGAGGCCCAAGAGTTTCTACCGGT
TGCCCTGATGCGCCTGAACCATGGCGGCATGCAGCTCAACACCGGGTTGC
TCGCCGACGCTGGCATTGAAGAAGCCGACACCTTGACGCTGCTCTTCAAT
ATCAATGGTGGCATGCGCGCCAAGTGGCGTAAGAAGCGTATGCGCCGCCT
GAGGCGCAAGCGCCGTAAGATGCGTCAGCGTGCCCGTTAA
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