prot_H-paniculata_contig14366.2625.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig14366.2625.1
Unique Nameprot_H-paniculata_contig14366.2625.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length711
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14366.2625.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 386..416
e-value: 0.0022
score: 18.1
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 173..221
e-value: 9.7E-12
score: 44.9
coord: 418..465
e-value: 9.8E-13
score: 48.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 666..698
e-value: 6.4E-6
score: 24.0
coord: 176..210
e-value: 2.7E-6
score: 25.2
coord: 281..315
e-value: 3.8E-7
score: 27.9
coord: 561..595
e-value: 1.7E-6
score: 25.8
coord: 492..525
e-value: 6.6E-6
score: 24.0
coord: 456..490
e-value: 1.3E-4
score: 19.9
coord: 352..385
e-value: 3.5E-4
score: 18.5
coord: 246..280
e-value: 7.5E-8
score: 30.1
coord: 386..420
e-value: 4.4E-5
score: 21.4
coord: 211..245
e-value: 1.3E-8
score: 32.4
coord: 421..455
e-value: 1.1E-9
score: 35.8
coord: 631..665
e-value: 4.8E-7
score: 27.5
coord: 596..630
e-value: 3.4E-6
score: 24.9
coord: 526..560
e-value: 1.2E-6
score: 26.3
coord: 317..350
e-value: 2.8E-4
score: 18.8
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 231..290
e-value: 4.8E-12
score: 45.8
coord: 582..642
e-value: 1.8E-12
score: 47.1
coord: 652..709
e-value: 5.2E-11
score: 42.5
coord: 512..572
e-value: 2.8E-14
score: 52.9
coord: 302..362
e-value: 1.4E-8
score: 34.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 419..453
score: 13.68
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 629..663
score: 12.288
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 594..628
score: 11.466
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 244..278
score: 12.617
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 559..593
score: 12.134
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 384..418
score: 12.09
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 209..243
score: 12.847
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 279..313
score: 11.783
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 139..173
score: 9.449
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 664..698
score: 12.036
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 454..488
score: 10.972
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 349..383
score: 11.367
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 314..348
score: 11.52
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 174..208
score: 12.858
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 524..558
score: 11.882
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 489..523
score: 12.244
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 325..482
e-value: 2.4E-52
score: 180.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 495..612
e-value: 2.6E-34
score: 120.2
coord: 220..324
e-value: 5.5E-38
score: 132.1
coord: 90..219
e-value: 1.7E-26
score: 94.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 613..710
e-value: 1.1E-29
score: 105.9
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 394..545
coord: 115..288
coord: 625..710
coord: 267..424
coord: 539..643

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14366contigH-paniculata_contig14366:1281..5192 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14366.2625.1mRNA_H-paniculata_contig14366.2625.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig14366 557..5209 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig14366.2625.1 ID=prot_H-paniculata_contig14366.2625.1|Name=mRNA_H-paniculata_contig14366.2625.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=711bp
MWIALPACCTAYQGVPLWSRPPSCDLLKREPPQGGTSSVQLPALALHAGI
SIRSRQAGSTSHLRAAAAESRQGKGGGAPSHVGPRGNNQIKGAEAQGHRA
ISRLIMARLKKAGEKRNWEQATDILIGALARHDADAVVDVCVYAAALNAA
AMCGKWKQALGTISVMKRKGVQPNVVAYSSAIKACAKSGRWKPAVELLSE
MRKEGLTPDAISYSSAITACGKGGQWERALSLLREMQREGVAPDVISYSS
AITACGKSGQSEQAVCLFREMQREGLRPNVISYSAAIAACRNGGHWEQAV
GLFREMQRAGISPDVSSYNSAIVACGDGGRWKQAIGLLREMQWEGLRPDV
ISFSSAMTACGNGGEQEQAMNLLREMQREGLKPDVISYSSAIAACDKSGR
WKQAMSLLKEMWKEGVTPNVVSYSSAIAACAKGGQWEEAMGLFREMQREG
ITPNVITYGAAIAACRNSAQWEQAVGLLREMQRMGVTPDVSSYNSAIAAC
GDGGRWKPAVDLLREMQREGLTPDVISYSLVITACGKGGESEQVMGLLKE
MRKEGVRPNVISFNSAITACGKSGKSEQAIGLLREMRRGGLRPDVISYSS
AITVCGNNGESEQAMGLLREMQKEGLTPDVISYSSAITACGDGGQWQQAV
DLLREMQREGLKPNVITYSSAITACGKGGQSEQALGLLKEMQREGLMPHV
GAYNAVIRAL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf