prot_H-paniculata_contig14315.2608.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig14315.2608.1
Unique Nameprot_H-paniculata_contig14315.2608.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length142
Homology
BLAST of mRNA_H-paniculata_contig14315.2608.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 1.410e-45
Identity = 83/141 (58.87%), Postives = 106/141 (75.18%), Query Frame = 0
Query:    2 EAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESVFY----------STTRQIYVMSLKRSIYGLRQSP 132
            +AM KEL SLD+H VAD IP SS+P   +VIGTRWV++VK DG+FKAR+V+QGW+Q+HGIDC +TFAPVC++ SQ +LLA+A A+ W V A+DVQ AFLNGKL E V+           S+T +  V  LK+S+YGLRQSP
Sbjct:  661 QAMLKELASLDDHDVADLIPVSSVPAGCSVIGTRWVYRVKTDGRFKARVVVQGWAQQHGIDCFTTFAPVCKIGSQRLLLAIAAAQGWPVIAMDVQTAFLNGKLSEDVYTYQAPGFEKIESSTGKPLVWKLKKSLYGLRQSP 801          
BLAST of mRNA_H-paniculata_contig14315.2608.1 vs. uniprot
Match: A0A6H5JVC8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC8_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.460e-36
Identity = 65/140 (46.43%), Postives = 92/140 (65.71%), Query Frame = 0
Query:    3 AMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESVF------YSTTRQI----YVMSLKRSIYGLRQSP 132
            AM KE+ SL +H VAD +P  S+PP    IG+RW++K+KA G  KARL +QGW Q++GID G T+APV R  SQ++L+A+A  + + V  +DV  AFL   ++E V+      Y  T ++     VM LK+S+YGL+QSP
Sbjct:   12 AMDKEMRSLKDHDVADLVPIQSLPPGAKPIGSRWLYKMKATGVMKARLTVQGWGQRYGIDYGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSP 151          
BLAST of mRNA_H-paniculata_contig14315.2608.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 2.810e-36
Identity = 67/140 (47.86%), Postives = 94/140 (67.14%), Query Frame = 0
Query:    3 AMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESVF------YSTTRQI----YVMSLKRSIYGLRQSP 132
            AM KE+ SL +H VAD +P  S+PP    IG+RW++K+KA G  KARL++QGW Q+HGIDCG T+APV R  SQ++L+A+A  + + V  +DV  AFL   ++E V+      Y  T ++     VM LK+S+YGL+QSP
Sbjct:  908 AMDKEMKSLKDHDVADLVPIQSLPPGAKPIGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSP 1047          
BLAST of mRNA_H-paniculata_contig14315.2608.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.290e-35
Identity = 65/140 (46.43%), Postives = 92/140 (65.71%), Query Frame = 0
Query:    3 AMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESVF------YSTTRQI----YVMSLKRSIYGLRQSP 132
            AM KE+ SL +H VAD +P   +PP    IG+RW++K+KA G  KARL++QGW Q+HGIDCG T+ PV R  SQ++ +A+A  + + V  +DV  AFL  K++E V+      Y  T ++     VM LK+S+YGL+QSP
Sbjct:  344 AMDKEIRSLKDHDVADLVPVQRLPPGAKPIGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYGPVSRFSSQLVFMAIAAERGYDVETMDVVTAFLQSKVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSP 483          
BLAST of mRNA_H-paniculata_contig14315.2608.1 vs. uniprot
Match: A0A6H5L2V7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2V7_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.240e-34
Identity = 62/140 (44.29%), Postives = 88/140 (62.86%), Query Frame = 0
Query:    3 AMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESVF------YSTTRQI----YVMSLKRSIYGLRQSP 132
            AM KE+    +H VAD +P  S+PP    IG+RW++K+KA G  +ARL+ QGW Q+HGIDCG T+APV R  SQ++L+A+A  + + V  + V  AFL   ++  V+      Y  T ++     VM LK+S YGL+QSP
Sbjct:   12 AMDKEMRGPKDHDVADLVPIQSLPPGANPIGSRWLYKMKATGVMQARLIAQGWGQRHGIDCGGTYAPVRRFSSQLVLMAIAAERGYVVETMKVVTAFLQSNVEGEVYVRQAKRYEITDEVTGLPLVMELKKSSYGLKQSP 151          
BLAST of mRNA_H-paniculata_contig14315.2608.1 vs. uniprot
Match: A0A6H5JLX1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLX1_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.740e-34
Identity = 54/107 (50.47%), Postives = 76/107 (71.03%), Query Frame = 0
Query:    3 AMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESVF 109
            AM KE+ SL +H VAD +P  S+PP    IG+RW++K+KA G  KARL++QGW Q+HGIDCG T+APV R  SQ++L+A+A  + + V  +DV  AFL   ++E V+
Sbjct:    9 AMDKEMRSLKDHDVADLVPIQSLPPGAKPIGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVY 115          
BLAST of mRNA_H-paniculata_contig14315.2608.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 6.270e-28
Identity = 62/139 (44.60%), Postives = 83/139 (59.71%), Query Frame = 0
Query:    3 AMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESVFYSTTRQI---------YVMSLKRSIYGLRQSP 132
            A ++E+ SL E QV   +P +++PP    I +RWVFK K DG FK RLV QGW+Q  G+DCGST+APVCRL+S  ML  +A   +  +  +DV  AFL   + E+VF                 VM L++S+YGL QSP
Sbjct:  854 AAEREIASLKERQVFKLVPRTAVPPGRKRIKSRWVFKRKVDGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSP 992          
BLAST of mRNA_H-paniculata_contig14315.2608.1 vs. uniprot
Match: A0A7I8JPU2_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8JPU2_SPIIN)

HSP 1 Score: 112 bits (280), Expect = 1.050e-27
Identity = 60/142 (42.25%), Postives = 89/142 (62.68%), Query Frame = 0
Query:    3 AMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKAD-----GKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESV-------FYSTTRQIYVMSLKRSIYGLRQSP 132
            AM++E+  ++E++    +    +P  H  IG +WV+KVK D      K+KARLV++G++Q+ GID    FAPV RL++  +L+ALA  + W VH +DV+ AFLNG LKE V       F ST  +  V  LK+++YGL Q+P
Sbjct:   89 AMEEEMALIEENRTWSLV---DLPHGHRAIGLKWVYKVKRDENGAVAKYKARLVVKGYAQRQGIDYDEVFAPVARLDTVRLLIALAAHEGWEVHHMDVKSAFLNGNLKEEVYVEQPASFISTGNEHKVFKLKKALYGLHQAP 227          
BLAST of mRNA_H-paniculata_contig14315.2608.1 vs. uniprot
Match: UPI001CB7699B (hypothetical protein n=1 Tax=Blastococcus sp. CPCC 205250 TaxID=2732513 RepID=UPI001CB7699B)

HSP 1 Score: 109 bits (272), Expect = 1.810e-27
Identity = 60/142 (42.25%), Postives = 93/142 (65.49%), Query Frame = 0
Query:    3 AMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADG-----KFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESV-------FYSTTRQIYVMSLKRSIYGLRQSP 132
            A+++EL+  + ++V + +P    P NH++IGT+WVF+ K D      + KARLV QG++Q+ GID   T+APV RLE+  MLLA A+ KD+ ++ +DV+ AFLNG + E V       F + T Q +V  L +++YGL+Q+P
Sbjct:   35 AIQEELNQFERNKVWELVPR---PQNHSIIGTKWVFRNKKDENGNVVRNKARLVAQGYNQQEGIDYDETYAPVARLEAIRMLLAFASHKDFKLYQMDVKSAFLNGYIMEEVYVEQPPGFENHTLQNHVFKLSKALYGLKQAP 173          
BLAST of mRNA_H-paniculata_contig14315.2608.1 vs. uniprot
Match: A0A6G1DYR6_9ORYZ (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1DYR6_9ORYZ)

HSP 1 Score: 108 bits (271), Expect = 2.770e-27
Identity = 59/141 (41.84%), Postives = 88/141 (62.41%), Query Frame = 0
Query:    4 MKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADG-----KFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESVFYS-------TTRQIYVMSLKRSIYGLRQSP 132
            M++E+ S++++   + +   ++P  H  IG +WVFKV+ D      + K RLV +G+ Q+ GID    FAPV R+ES  MLLALA  + WTVH +DV+ AFLNG LKE V+ S          +  V+ L++++YGLRQ+P
Sbjct:    1 MREEMRSIEDNSTWELV---ALPTRHRAIGLKWVFKVERDEHGNVIQHKVRLVAKGYVQRAGIDFDEVFAPVARMESMHMLLALAAHERWTVHHMDVKSAFLNGDLKEEVYVSQLPGFVVNDSEQKVLCLRKALYGLRQAP 138          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14315.2608.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAG6_9PHAE1.410e-4558.87Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JVC8_9PHAE1.460e-3646.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KY84_9PHAE2.810e-3647.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCZ9_9PHAE1.290e-3546.43Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5L2V7_9PHAE1.240e-3444.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLX1_9PHAE1.740e-3450.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JIN1_9PHAE6.270e-2844.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7I8JPU2_SPIIN1.050e-2742.25Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
UPI001CB7699B1.810e-2742.25hypothetical protein n=1 Tax=Blastococcus sp. CPCC... [more]
A0A6G1DYR6_9ORYZ2.770e-2741.84Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 24..133
e-value: 8.9E-31
score: 107.4
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 2..132
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 2..132

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14315contigH-paniculata_contig14315:149..603 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14315.2608.1mRNA_H-paniculata_contig14315.2608.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig14315 146..1557 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig14315.2608.1 ID=prot_H-paniculata_contig14315.2608.1|Name=mRNA_H-paniculata_contig14315.2608.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=142bp
MEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARL
VIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFL
NGKLKESVFYSTTRQIYVMSLKRSIYGLRQSPIGTIPSTIS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like