mRNA_H-paniculata_contig14315.2608.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14315.2608.1
Unique NamemRNA_H-paniculata_contig14315.2608.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14315.2608.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 6.230e-63
Identity = 166/508 (32.68%), Postives = 245/508 (48.23%), Query Frame = 1
Query:   13 MKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESVFYSTTRQI---------YVMSLKRSIYGLRQSP---IGTI-PSTIS*GVWAL----------HRPSRI--------LVCTVNEATTTTS*LQNQWTNY*WMFATNS*TSSLSRTLERYRL-------FLAWRYCATNKLAPFSCHSTSSY------RFNMSSANPTKTPGTKTGQSTASNNDSLLDAAVTTEYQAMVGSLIFLTQFTRFDICFSVIQAARFMSAPTQQHLAAVKRTLRYLRGYSDISITYSRSKLELVGYSDASYCT-----MSTTGTMFFSANELVHFAS*LQNISATSTTKAELIALAACTKQGIHLLGICRELELQLNSCQ--VRSDNRGALHIPANSNQSSRSIHLAIRFAAFRDWVRSKQLIIDHVSSSDQLADILIKRCERVTFARL 1383
            +K+E+ SL   +V   +P S++PP    I ++WVFK KADG FK R+V QGW+Q  G+DCGST+APVCR++S  M+  +    +     +DV  AFL   ++E VF                 VM L +S+YGL QSP     TI P  +  G  AL          H  ++I        L+   N++      L + W                 +  +R+++       F        ++ A     S  +Y      RF MS + PT TPG  +  S     D+LLD   T +YQ +VGSL+++ Q  R+DI ++  Q AR M+ P++ H+ A K TLRYL G  D SITY +   +L  +SD+++        ST+  +   AN  + F S LQ ++A ST +AEL+A A   K+ +    +  EL       Q  V  DN   LH   N + SSR+ H+A+RF   R+ V   ++ I +V + D LADI  K   +  F  L
Sbjct:  149 LKREMKSLSNRKVYKLVPRSAVPPGRKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAIKHLLSSGW-------KLGGIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHL 649          
BLAST of mRNA_H-paniculata_contig14315.2608.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 4.480e-60
Identity = 156/492 (31.71%), Postives = 241/492 (48.98%), Query Frame = 1
Query:    1 WMEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESVFY----------STTRQIYVMSLKRSIYGLRQSPI---GTIPSTIS*GVWALHRPSR----------ILVCTVNEATTTTS*LQNQWTNY*WMFATNS*TSSLSRTLERYRLFLAWRYCATNKLAPFSCH--STSSYRFNMSSANPTKTPGTKTGQSTASNNDSLLDAAVTTEYQAMVGSLIFLTQFTRFDICFSVIQAARFMSAPTQQHLAAVKRTLRYLRGYSDISITYSRSKLELVGYSDASYCT-----MSTTGTMFFSANELVHFAS*LQNISATSTTKAELIALAACTKQGIHLLGICRELELQ-LNSCQVRSDNRGALHIPANSNQSSRSIHLAIRFAAFRDWVRSKQLIIDHVSSSDQLADILIKRCERVTFARL 1383
            W  A  KE+ +L +H V + +P SS+P    ++GT++VFK K DG+FKARLV+ G  Q+ G D G ++APVCR+ S  M  A+    +W ++ LDV  AFLN      V+           S T +  V  L+RS+YGL QSP     T+  +++   W   +             I++ TV       +    Q  +      T+    +    ++R       R      LA    H  +T   RF M  ANP  TPG     ST    D +L       YQ+M GS+++L Q TRFD+ ++ +Q ++  S P Q ++ A K  LRYLRG   + I Y R +  L  ++D+S+        STTG +FF A  L+ + +  Q ++A ST +AE+ AL+   ++ +++     EL  +   S  + SD+ GAL +  N+  S R+ H+ +R+   R+ V   Q+ + H  S  QLADI  K   +  FA +
Sbjct:  357 WKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVTLRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASI 848          
BLAST of mRNA_H-paniculata_contig14315.2608.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 7.700e-60
Identity = 162/496 (32.66%), Postives = 245/496 (49.40%), Query Frame = 1
Query:    1 WMEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESVFYSTTRQI---------YVMSLKRSIYGLRQSP---IGTI-PSTIS*GVWALHRPSRILVCTVNEATTTTS*LQNQWTNY*WMFATNS*TSSL--SRTLERYRL-------FLAWRYCATNKLAPFSCHSTSSY------RFNMSSANPTKTPGTKTGQSTASNNDSLLDAAVTTEYQAMVGSLIFLTQFTRFDICFSVIQAARFMSAPTQQHLAAVKRTLRYLRGYSDISITYSRSKLELVGYSDASYCT-----MSTTGTMFFSANELVHFAS*LQNISATSTTKAELIALAACTKQGIHLLGICRELELQLNSCQ--VRSDNRGALHIPANSNQSSRSIHLAIRFAAFRDWVRSKQLIIDHVSSSDQLADILIKRCERVTFARL 1383
            W  A ++E+ SL + +V   +P S++PP    I ++WVFK KADG FK R+V QGW+Q  G+DCGST+APVCR++S  M+  +    +     +DV  AFL   ++E VF                 VM L +S+YGL QSP     TI P  +  G  AL     + +   N A          + +   +   +S   S+   +  +R+++        +       ++ A     S  +Y      RF +S + PT TPG  +  S     D+LLD   T +YQ +VGSL+++ Q  R+DI ++  Q AR M+ P++ H+ A K TLRYL G  D SITY +   +L  +SD+++        ST+  +   AN  + F S LQ ++A ST +AEL+A A    + +    +  EL       Q  V  DN   LH   N + SSR+ H+A+RF   R+ V   ++ I +V + D LADI  K   +  F  L
Sbjct: 1166 WNAAAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKI----YLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHL 1657          
BLAST of mRNA_H-paniculata_contig14315.2608.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 3.430e-58
Identity = 151/484 (31.20%), Postives = 237/484 (48.97%), Query Frame = 1
Query:   25 LHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESVFY----------STTRQIYVMSLKRSIYGLRQSPI---GTIPSTIS*GVWALHRPSR----------ILVCTVNEATTTTS*LQNQWTNY*WMFATNS*TSSLSRTLERYRLFLAWRYCATNKLAPFSCH--STSSYRFNMSSANPTKTPGTKTGQSTASNNDSLLDAAVTTEYQAMVGSLIFLTQFTRFDICFSVIQAARFMSAPTQQHLAAVKRTLRYLRGYSDISITYSRSKLELVGYSDASYCT-----MSTTGTMFFSANELVHFAS*LQNISATSTTKAELIALAACTKQGIHLLGICRELELQ-LNSCQVRSDNRGALHIPANSNQSSRSIHLAIRFAAFRDWVRSKQLIIDHVSSSDQLADILIKRCERVTFARL 1383
            + +L +H V + +P SS+P    ++GT++VFK K DG+FKARLV+ G  Q+ G D G ++APVCR+ S  M  A+    +W ++ LDV  AFLN      V+           S T +  V  L+RS+YGL QSP     T+  +++   W   +             I++ TV       +    Q  +      T+    +    ++R       R      LA    H  +T   RF M  ANP  T G     ST    D +L       YQ+M GS+++L Q T+FD+ ++ +Q ++  S P Q ++ A K  LRYLRG   + I Y R +  L  ++D+S+        STTG +FF A  L+ + +  Q ++A ST +AE+ AL+   ++ +++     EL  +   S  + SD+ GAL +  N+  S R+ H+A+R+   R+ V   Q+ + H  S  QLADI  K   +  FA +
Sbjct:    1 MDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASI 484          
BLAST of mRNA_H-paniculata_contig14315.2608.1 vs. uniprot
Match: A0A6H5K4S9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S9_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 1.820e-56
Identity = 148/475 (31.16%), Postives = 225/475 (47.37%), Query Frame = 1
Query:    1 WMEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESVFYS----------TTRQIYVMSLKRSIYGLRQSPIGTIPSTIS*GVWALHRPSRILVCTVNEATTTTS*LQNQWTNY*WMFATNS*TSSLSRTLERYRLFLAWRYCATNKLAPFSCHSTSSYRFNMSSANPTKTPGTKTGQSTASNNDSLLDAAVTTEYQAMVGSLIFLTQFTRFDICFSVIQAARFMSAPTQQHLAAVKRTLRYLRGYSDISITYSRSKLELVGYSDASYCT-----MSTTGTMFFSANELVHFAS*LQNISATSTTKAELIALAACTKQGIHLLGICRELELQ-LNSCQVRSDNRGALHIPANSNQSSRSIHLAIRFAAFRDWVRSKQLIIDHVSSSDQLADILIKRCERVTFA 1377
            W  A+  E+ +L +H+V   +  S +P +  +  TR+VFK+KAD +FKARLV  G  Q+ G   G  +APV RL S  ML A+A    W V+ LDV  AFLN      V+            TT ++ V  L++S+YGL QSP           +W             N+A                               +R  +F  W +  T+             R+ M  ANP  TPG     ST    D LL       +QA+ GSL++L Q TR+D+ ++V Q  R  + P Q H+AA K  LRYLRG  D+ I Y + +  L  ++D+S+        STTG +FF    L+ + +  Q ++A +T +AEL AL+   ++ +++     E+  +   S  + SD+ GAL + +N+  SSR+ H+A+RF   R+  +  ++ + H  S+  LADI  K   +  FA
Sbjct:  471 WKSAIDTEMGNLAKHKVFKKVRISLVPKDEDIFDTRFVFKIKADSRFKARLVAGGHRQRAGRHYGENYAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSP----------SLW-------------NDAIN-----------------------------DRLIIF-GWHFEMTDM----------GERYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDMSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFA 882          
BLAST of mRNA_H-paniculata_contig14315.2608.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 8.840e-56
Identity = 153/493 (31.03%), Postives = 235/493 (47.67%), Query Frame = 1
Query:    1 WMEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESVFYS----------TTRQIYVMSLKRSIYGLRQSPI---GTIPSTIS*GVWALHR--PSRILVCTVNEATTTTS*LQNQWTNY*WMFATNS*TSSLSRTLERYRLFLAWRYCATNKLAPFSCHSTSSY-----------RFNMSSANPTKTPGTKTGQSTASNNDSLLDAAVTTEYQAMVGSLIFLTQFTRFDICFSVIQAARFMSAPTQQHLAAVKRTLRYLRGYSDISITYSRSKLELVGYSDASYCT-----MSTTGTMFFSANELVHFAS*LQNISATSTTKAELIALAACTKQGIHLLGICRELELQ-LNSCQVRSDNRGALHIPANSNQSSRSIHLAIRFAAFRDWVRSKQLIIDHVSSSDQLADILIKRCERVTFARL 1383
            W  A+  E+ +L +H+V   +  S +P +  +  TR+VFK+KAD +FKARLV  G  Q+ G   G  +APV RL S  ML A+A    W V+ LDV  AFLN      V+            TT ++ V  L++S+YGL QSP      I   +    W   R  P   +  + +E T     + +           +     L  + E   +    R         +  H T +            R+ M  ANP  TPG     ST    D LL       +QA+ GSL++L Q TR+D+ ++V Q  R  + P Q H+AA K  LRYLRG  D+ I Y + K  L  ++D+S+        STTG +FF    L+ + +  Q ++A +T +AEL AL+   ++ +++     E+  +   S  + SD+ GAL + +N+  SSR+ H+A+RF   R+  +  ++ + H  S+  LADI  K   +  FA +
Sbjct:  234 WKSAIDTEMGNLAKHKVFKKVRISLVPKDEDIFDTRFVFKIKADSRFKARLVAGGHRQRAGRHFGRNYAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYE-HGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATI 725          
BLAST of mRNA_H-paniculata_contig14315.2608.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 1.500e-55
Identity = 157/479 (32.78%), Postives = 230/479 (48.02%), Query Frame = 1
Query:    1 WMEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESVFYSTTRQI---------YVMSLKRSIYGLRQSP-------------IGTIPSTIS*GVWALHRPSRILVCT--VNEATTTTS*LQNQWTNY*WMFATNS*TSSLSRTLERYRLFLAWRYCATNKLAPFSCHSTSSYRFNMSSANPTKTPGTKTGQSTASNNDSLLDAAVTTEYQAMVGSLIFLTQFTRFDICFSVIQAARFMSAPTQQHLAAVKRTLRYLRGYSDISITYSRSKLELVGYSDASYCTMSTTGTMFFSANELVHFA-----S*LQNISATSTTKAELIALAACTKQGIHLLGICRELEL--QLNSCQVRSDNRGALHIPANSNQSSRSIHLAIRFAAFRDWVRSKQLIIDHVSSSDQLADI 1344
            W  A  KE+ SL + +V   +P + +P  H VIG++WVFKVK +   KARLV +GW+Q  G DCG TFAPVCRL+S  M+ A+A  KD  V  LDV+ AFL   ++E+VF                 VM L++S+ GL QSP             IG  P      V+     + ++V T  V++         +Q  NY         T+S+   L+R                           F M S  P  T G     S     ++LL+A     YQA++GS+++L Q TR+DI +   Q AR MS P++ H+ A K  LRYL G  D SITY R   +L   S+A+    +  G    S   ++  A     S LQ+++A ST +AEL+A A   K+ I    + +EL    + +S  +  D+   L++  N   S  + H+A+RF   R  V+  ++ I ++ + D LADI
Sbjct:  317 WKAATDKEIKSLQDLKVYKLVPRTDVPLGHNVIGSKWVFKVKPENTHKARLVAKGWNQVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNMEELQLVMKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSDTCVYIYDHNNTVVVLTLYVDDLLIIRGGAHHQPGNY---------TTSI---LDR---------------------------FGMGSCKPLSTAGFGPELSVKQPEETLLNAEGKQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADI 756          
BLAST of mRNA_H-paniculata_contig14315.2608.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 1.730e-55
Identity = 163/493 (33.06%), Postives = 241/493 (48.88%), Query Frame = 1
Query:    1 WMEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESVFYSTTRQIYVMSLKRSIYGLRQSP---IGTI-PSTIS*GVWAL----------HRPSRI--------LVCTVNEATTTT---S*LQNQWTNY*WMFATNS*TSSLSRTLERYRLFLAWRYCATNKLAPFSCHSTSSYRFNMSSANPTKTPGTKTGQSTASNNDSLLDAAVTTEYQAMVGSLIFLTQFTRFDICFSVIQAARFMSAPTQQHLAAVKRTLRYLRGYSDISITYSRSKLELVGYSDASYCT-----MSTTGTMFFSANELVHFAS*LQNISATSTTKAELIALAACTKQGIHLLGICRELELQLNSCQ--VRSDNRGALHIPANSNQSSRSIHLAIRFAAFRDWVRSKQLIIDHVSSSDQLADILIKRCERVTFARL 1383
            W  A ++E+ SL + +V   +P S +PP    I ++WVFK KADG FK R+V QGW+Q  G+DCGST+APVCR++S  M+  +    +     +D       G +             VM L +S+YGL QSP     TI P  +  G  AL          H  ++I        L+   N++   +     LQ ++        T+   +SL   +E  R     R   T  ++  +   +   RF MS + PT TPG  +  S     D+LLD   T +YQ +VGSL+++ Q  R+DI ++  Q AR M+ P++ H+ A K TLRYL G  D SITY +   +L  +SD+++        ST+  +   AN  + F S LQ ++A ST +AEL+A A   K+ +    +  EL       Q  V  DN   LH   N + SSR+ H+A+RF   R+ V   ++ I +V + D LADI  K      F  L
Sbjct:  524 WNAAAEREMKSLSDRKVYKLVPRSGVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVDFNLIFDQMDD-----GGDM-------------VMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFK------MTDLGEASLVLRMEIRRD----REANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHL 988          
BLAST of mRNA_H-paniculata_contig14315.2608.1 vs. uniprot
Match: UPI0018763992 (DDE-type integrase/transposase/recombinase n=2 Tax=Streptomyces plicatus TaxID=1922 RepID=UPI0018763992)

HSP 1 Score: 206 bits (524), Expect = 2.680e-54
Identity = 165/499 (33.07%), Postives = 249/499 (49.90%), Query Frame = 1
Query:    1 WMEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVF--KVKADGKF---KARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESV-------FYSTTRQIYVMSLKRSIYGLRQSP-------------IGTIPSTIS*GVWALHRPSRILVCTVNEATTTTS*LQNQWTNY*WMFATNS*TSSLSRTLERYRLFLAWRYCATNKLAPFSCHSTSSY------RFNMSSANPTKTPGTKTGQSTASNNDSLLDAAVTTEYQAMVGSLIFLTQFTRFDICFSVIQAARFMSAPTQQHLAAVKRTLRYLRGYSDISITYSRSK-LELVGYSDASYC-----TMSTTGTMFFSANELVHFAS*LQNISATSTTKAELIALAACTKQGIHLLGICRELELQL-NSCQVRSDNRGALHIPANSNQSSRSIHLAIRFAAFRDWVRSKQLIIDHVSSSDQLADILIKRCERVTFARL 1383
            W++AM +EL  ++++   + +P    P +  VIGT+WVF  K+  DG+    KARLV +G++Q  GID   TFAPV RLE+  M LALA  K++ V  +DV+ AFLNG L+E V       F+S      V  L++++YGL+Q+P             IG     +   ++     S+ LV  V            +      +FA    T      L     FL  +     +L      S   Y      RFNM  + P  TP      ST  + D    +   T Y++M+GSL++LT  TR DI  +V   ARF S+PT++HL AVKR  RYL+G  ++ + Y + K   LV YSDA +        ST+G  F+  + LV + S  Q+  + ST +AE IA A C  Q + +  +  +L +   +   +  DN  A+HI  N  Q SR+ H+AIR+   +D V   ++ +++VS+++Q+ADI  K   +  F  L
Sbjct: 1113 WLKAMHEELEQIEKNSTWELVPR---PSDKNVIGTKWVFRNKLNEDGQVVRNKARLVCKGYAQIEGIDFEETFAPVARLEAIRMFLALAAYKNFKVFQMDVKSAFLNGLLEEEVYIEQPDGFHSDKSSDLVCKLRKALYGLKQAPRAWYSRLDTYLRKIGFSKGLVDSNLYVKTEQSKQLVVIVYVDDIIFGGNDEEMCR---LFAKEMKTEFEMSMLGELSFFLGLQ---VQQLKHSIFISQLKYIKEMLKRFNMEDSKPVSTP---MSTSTKLSKDDKTSSVDHTTYRSMIGSLLYLTA-TRPDILQAVCMVARFQSSPTEEHLTAVKRIFRYLKGTMELGLCYPKGKSFTLVAYSDADWAGCIDDRKSTSGGAFYLGDRLVAWHSKKQDSVSLSTAEAEYIAAATCCTQVLWMRQMLSDLGVSTADPTPIFCDNTSAIHISKNPVQHSRTKHVAIRYHFLKDKVADGEVKLEYVSTTEQVADIFTKPLPKEVFEYL 1598          
BLAST of mRNA_H-paniculata_contig14315.2608.1 vs. uniprot
Match: A0A1J3ITQ9_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3ITQ9_NOCCA)

HSP 1 Score: 201 bits (510), Expect = 1.780e-52
Identity = 161/500 (32.20%), Postives = 248/500 (49.60%), Query Frame = 1
Query:    1 WMEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADG-----KFKARLVIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFLNGKLKESV-------FYSTTRQIYVMSLKRSIYGLRQSP-------------IGTIPSTIS*GVWALHRPSRIL---VCTVNEATTTTS*LQNQWTNY*WMFATNS*TSSLSRTL-ERYRLFLAWRYCATNKLAPFSCHSTSSY----RFNMSSANPTKTPGTKTGQSTASNNDSLLDAAVTTEYQAMVGSLIFLTQFTRFDICFSVIQAARFMSAPTQQHLAAVKRTLRYLRGYSDISITYSR-SKLELVGYSDASYC-----TMSTTGTMFFSANELVHFAS*LQNISATSTTKAELIALAACTKQGIHLLGICRELELQLNSCQVRSDNRGALHIPANSNQSSRSIHLAIRFAAFRDWVRSKQLIIDHVSSSDQLADILIKRCERVTFARL 1383
            W+ +M++EL     + V + +P   +P    V+GT+W+FK K D      + K+RLV QG+SQ  G+D   TFAPV RLES  + L +A   ++ VH +DV+ AFLNG L+E V       F   T   YV  LK+++YGL+Q+P              G +  T+   ++ L +   I+   +C  +     TS +  +  N+       S T     ++ E  +  L  +   T K   F   ST +     +F +      +TP + T   T    D   + A    Y+ M+GSL++LT  +R D+CFSV   AR+ + P Q HL AVK+ LRY++G  ++ I YS+ S   L G+ DA +        ST+G  F   N L+ + S  QN  + ST +AE IAL +C  Q I +  +  +  ++     V  DN+ A+ I  N  Q SR+ H+ IR    R+ V  KQ++++HV +  QLAD+  K  +   F  L
Sbjct:  874 WIISMEEELEEFVRNDVWELVP---LPEGVNVVGTKWIFKNKTDDAGSIVRNKSRLVAQGYSQVEGVDFDETFAPVARLESIRLFLGIACILNFKVHQMDVKSAFLNGILQEEVYVAQPKGFEDPTHPDYVYKLKKALYGLKQAPKAWYEHLTKFLIDTGYVRGTVDKTLFILEKEDEIMMVQICVDDIIFGGTSEVLVE--NF-----VKSMTKEFKMSMVEELKYLLGLQVNQTEK-GIFISQSTYAKNLLEKFGLDKCKEARTPMSTT---TKIGKDEHGEDADVKLYRGMIGSLLYLTA-SRPDLCFSVGVCARYQAKPKQSHLQAVKKILRYVKGTVNLGIFYSKGSNRNLAGHCDADWAGCADDRKSTSGGCFLLGNNLISWLSKKQNSVSLSTAEAEYIALGSCCTQLIWMRQMSADYGMESGPFLVYCDNKSAIDISKNPVQHSRTKHIDIRHHFVRELVEDKQVVLEHVVTELQLADLFTKPLDFNRFVTL 1358          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14315.2608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JME8_9PHAE6.230e-6332.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE4.480e-6031.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE7.700e-6032.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQD0_9PHAE3.430e-5831.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K4S9_9PHAE1.820e-5631.16CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JF46_9PHAE8.840e-5631.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6R7_9PHAE1.500e-5532.78Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KNH5_9PHAE1.730e-5533.06Integrase catalytic domain-containing protein n=1 ... [more]
UPI00187639922.680e-5433.07DDE-type integrase/transposase/recombinase n=2 Tax... [more]
A0A1J3ITQ9_NOCCA1.780e-5232.20Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14315contigH-paniculata_contig14315:146..1557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score112.8
Seed ortholog evalue1.3e-22
Seed eggNOG ortholog4538.ORGLA11G0062300.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons2
Model size1383
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14315.2608.1prot_H-paniculata_contig14315.2608.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14315 149..603 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929139.9797547-UTR-H-paniculata_contig14315:145..1481622929139.9797547-UTR-H-paniculata_contig14315:145..148Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14315 146..148 +
1691480746.7157032-UTR-H-paniculata_contig14315:145..1481691480746.7157032-UTR-H-paniculata_contig14315:145..148Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14315 146..148 +
1622929140.0150707-UTR-H-paniculata_contig14315:603..15571622929140.0150707-UTR-H-paniculata_contig14315:603..1557Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14315 604..1557 +
1691480746.759418-UTR-H-paniculata_contig14315:603..15571691480746.759418-UTR-H-paniculata_contig14315:603..1557Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14315 604..1557 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929139.9930701-CDS-H-paniculata_contig14315:148..4761622929139.9930701-CDS-H-paniculata_contig14315:148..476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14315 149..476 +
1691480746.7299504-CDS-H-paniculata_contig14315:148..4761691480746.7299504-CDS-H-paniculata_contig14315:148..476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14315 149..476 +
1622929140.0043461-CDS-H-paniculata_contig14315:505..6031622929140.0043461-CDS-H-paniculata_contig14315:505..603Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14315 506..603 +
1691480746.7414052-CDS-H-paniculata_contig14315:505..6031691480746.7414052-CDS-H-paniculata_contig14315:505..603Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14315 506..603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14315.2608.1

>prot_H-paniculata_contig14315.2608.1 ID=prot_H-paniculata_contig14315.2608.1|Name=mRNA_H-paniculata_contig14315.2608.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=142bp
MEAMKKELHSLDEHQVADFIPASSIPPNHTVIGTRWVFKVKADGKFKARL
VIQGWSQKHGIDCGSTFAPVCRLESQIMLLALATAKDWTVHALDVQVAFL
NGKLKESVFYSTTRQIYVMSLKRSIYGLRQSPIGTIPSTIS*
back to top

mRNA from alignment at H-paniculata_contig14315:146..1557+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14315.2608.1 ID=mRNA_H-paniculata_contig14315.2608.1|Name=mRNA_H-paniculata_contig14315.2608.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1412bp|location=Sequence derived from alignment at H-paniculata_contig14315:146..1557+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGATGGAGGCAATGAAGAAGGAACTGCACAGCTTAGACGAACACCAAGT CGCCGATTTCATCCCAGCTAGCTCCATTCCACCCAACCACACAGTCATCG GCACGCGCTGGGTGTTTAAAGTGAAAGCAGACGGAAAATTCAAGGCTCGA CTCGTGATACAAGGCTGGTCTCAAAAACACGGAATAGACTGCGGGAGCAC TTTTGCACCAGTATGCAGACTGGAGAGCCAGATAATGCTACTCGCGCTTG CAACAGCAAAGGATTGGACAGTCCACGCATTGGATGTTCAAGTTGCTTTT CTGAACGGCAAACTGAAGGAAAGCGTCTTCTGTAAACAAGCACCTGCTTC TAGAAGACAGACTCCACTACAAGACAAATCTACGTGATGAGCTTAAAGAG ATCGATATATGGGTTGCGCCAAAGCCCAATTGGAACCATACCATCGACAA TAAGCTGAGGAGTATGGGCTTTGCACCGACCATCTCGGATCCTTGTGTGT ACAGTAAATGAAGCAACGACGACGACATCCTAGTTACAGAACCAATGGAC GAACTACTAATGGATGTTCGCAACCAACTCATGAACAAGTTCACTATCAC GGACCTTGGAGAGGTATCGCTTGTTCTTGGCCTGGAGGTACTGCGCAACA AACAAACTAGCACCCTTCAGCTGTCACAGCACAAGTTCGTATAGGTTCAA CATGTCATCGGCAAATCCTACCAAGACGCCAGGTACTAAAACGGGCCAAA GCACTGCTAGTAATAATGACAGCCTACTGGATGCAGCAGTCACGACGGAA TATCAAGCCATGGTAGGGAGCCTCATCTTCCTGACTCAGTTTACAAGATT CGACATCTGCTTCAGCGTCATCCAAGCAGCACGGTTCATGAGTGCACCAA CCCAACAGCACTTGGCCGCAGTAAAGCGCACTCTTCGCTATTTGCGGGGC TACTCTGATATTTCAATCACTTACAGCAGAAGCAAACTGGAACTGGTCGG CTACTCTGACGCATCGTACTGCACAATGTCTACAACGGGCACGATGTTCT TCTCTGCTAACGAATTGGTACACTTTGCGTCTTGACTTCAGAATATCTCA GCTACAAGCACAACTAAGGCGGAACTCATCGCACTAGCCGCATGCACTAA ACAGGGTATTCACCTTCTAGGGATCTGCAGAGAACTTGAGCTTCAACTCA ACAGCTGTCAAGTTCGCAGTGACAACAGAGGCGCCCTCCATATCCCAGCA AATAGCAATCAATCCAGCCGCAGCATACATCTAGCCATCAGATTTGCAGC ATTTCGCGACTGGGTCAGGAGCAAGCAGCTCATCATCGACCACGTATCAA GTTCAGACCAGCTAGCCGACATCCTCATCAAGCGCTGTGAGAGAGTGACG TTTGCTCGGCTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig14315:146..1557+

>mRNA_H-paniculata_contig14315.2608.1 ID=mRNA_H-paniculata_contig14315.2608.1|Name=mRNA_H-paniculata_contig14315.2608.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at H-paniculata_contig14315:146..1557+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGCAATGAAGAAGGAACTGCACAGCTTAGACGAACACCAAGTCGC
CGATTTCATCCCAGCTAGCTCCATTCCACCCAACCACACAGTCATCGGCA
CGCGCTGGGTGTTTAAAGTGAAAGCAGACGGAAAATTCAAGGCTCGACTC
GTGATACAAGGCTGGTCTCAAAAACACGGAATAGACTGCGGGAGCACTTT
TGCACCAGTATGCAGACTGGAGAGCCAGATAATGCTACTCGCGCTTGCAA
CAGCAAAGGATTGGACAGTCCACGCATTGGATGTTCAAGTTGCTTTTCTG
AACGGCAAACTGAAGGAAAGCGTCTTCTATGGAGGCAATGAAGAAGGAAC
TGCACAGCTTAGACGAACACCAAGTCGCCGATTTCATCCCAGCTAGCTCC
ATTCCACCCAACCACACAGTCATCGGCACGCGCTGGGTGTTTAAAGTGAA
AGCAGACGGAAAATTCAAGGCTCGACTCGTGATACAAGGCTGGTCTCAAA
AACACGGAATAGACTGCGGGAGCACTTTTGCACCAGTATGCAGACTGGAG
AGCCAGATAATGCTACTCGCGCTTGCAACAGCAAAGGATTGGACAGTCCA
CGCATTGGATGTTCAAGTTGCTTTTCTGAACGGCAAACTGAAGGAAAGCG
TCTTCTACTCCACTACAAGACAAATCTACGTGATGAGCTTAAAGAGATCG
ATATATGGGTTGCGCCAAAGCCCAATTGGAACCATACCATCGACAATAAG
CTGAACTCCACTACAAGACAAATCTACGTGATGAGCTTAAAGAGATCGAT
ATATGGGTTGCGCCAAAGCCCAATTGGAACCATACCATCGACAATAAGCT
GA
back to top