prot_H-paniculata_contig14292.2598.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig14292.2598.1
Unique Nameprot_H-paniculata_contig14292.2598.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length154
Homology
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BLAST of mRNA_H-paniculata_contig14292.2598.1 vs. uniprot
Match: A0A6H5L3Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y8_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 8.740e-16
Identity = 33/43 (76.74%), Postives = 40/43 (93.02%), Query Frame = 0 
Query:    1 GLHCGFRHSEAASNTQRICNRWAAGCVCDGRCNLRHPSAAELA 43
            G+HCGFRH+EA+ +T+R+CNRWAAG  CDGRCNLRHPSAAE+A
Sbjct:   18 GVHCGFRHNEASRHTERLCNRWAAGYTCDGRCNLRHPSAAEIA 60
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14292.2598.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L3Y8_9PHAE8.740e-1676.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 78..104
e-value: 0.0019
score: 27.5
coord: 14..38
e-value: 24.0
score: 5.2
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 82..103
e-value: 1.4E-4
score: 21.7
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 13..39
score: 7.47
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 78..105
score: 15.047
NoneNo IPR availableGENE3D1.20.120.1350coord: 76..139
e-value: 3.1E-6
score: 28.7
NoneNo IPR availablePANTHERPTHR15725ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAININGcoord: 1..113
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 81..102

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14292contigH-paniculata_contig14292:4829..5736 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14292.2598.1mRNA_H-paniculata_contig14292.2598.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig14292 4828..5736 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig14292.2598.1 ID=prot_H-paniculata_contig14292.2598.1|Name=mRNA_H-paniculata_contig14292.2598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp
GLHCGFRHSEAASNTQRICNRWAAGCVCDGRCNLRHPSAAELAVPPPTPP
SAMRRPRSHYYTHAQSPAAVAASPSSTSTTPPPCKFHAQGRCIKGDACPF
FHVPRSALDSATTLRAAALTARSADASPAAVNGDSGQKRIVSGGRGGGGQ
RDGR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR036855Znf_CCCH_sf