mRNA_H-paniculata_contig14292.2598.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14292.2598.1
Unique NamemRNA_H-paniculata_contig14292.2598.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14292.2598.1 vs. uniprot
Match: A0A6H5L3Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y8_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 8.740e-16
Identity = 33/43 (76.74%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 GLHCGFRHSEAASNTQRICNRWAAGCVCDGRCNLRHPSAAELA 129
            G+HCGFRH+EA+ +T+R+CNRWAAG  CDGRCNLRHPSAAE+A
Sbjct:   18 GVHCGFRHNEASRHTERLCNRWAAGYTCDGRCNLRHPSAAEIA 60
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14292.2598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L3Y8_9PHAE8.740e-1676.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14292contigH-paniculata_contig14292:4828..5736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_006050.1
Exons2
Model size463
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929137.8365245-CDS-H-paniculata_contig14292:4828..52171622929137.8365245-CDS-H-paniculata_contig14292:4828..5217Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14292 4829..5217 -
1691480745.8297992-CDS-H-paniculata_contig14292:4828..52171691480745.8297992-CDS-H-paniculata_contig14292:4828..5217Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14292 4829..5217 -
1622929137.849792-CDS-H-paniculata_contig14292:5663..57361622929137.849792-CDS-H-paniculata_contig14292:5663..5736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14292 5664..5736 -
1691480745.8423228-CDS-H-paniculata_contig14292:5663..57361691480745.8423228-CDS-H-paniculata_contig14292:5663..5736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14292 5664..5736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14292.2598.1prot_H-paniculata_contig14292.2598.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14292 4829..5736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14292.2598.1

>prot_H-paniculata_contig14292.2598.1 ID=prot_H-paniculata_contig14292.2598.1|Name=mRNA_H-paniculata_contig14292.2598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp
GLHCGFRHSEAASNTQRICNRWAAGCVCDGRCNLRHPSAAELAVPPPTPP
SAMRRPRSHYYTHAQSPAAVAASPSSTSTTPPPCKFHAQGRCIKGDACPF
FHVPRSALDSATTLRAAALTARSADASPAAVNGDSGQKRIVSGGRGGGGQ
RDGR
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mRNA from alignment at H-paniculata_contig14292:4828..5736-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14292.2598.1 ID=mRNA_H-paniculata_contig14292.2598.1|Name=mRNA_H-paniculata_contig14292.2598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=909bp|location=Sequence derived from alignment at H-paniculata_contig14292:4828..5736- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCTTCACTGCGGTTTTCGCCACAGTGAGGCTGCCAGCAACACCCAGCG
AATATGCAATAGATGGGCAGCAGGTGAGAAGAGGAGGTTGGGGGCCTACT
GCCGTCCCTTCCTGTAGTTTGTCTTGCTCTACAACGGCTGTTGTTTATTA
TGTGTGTGAGCTGCGTTTATTTCACGTTTCGTTTCGTTTCGTTTCGTTTC
GTTTCGTTTTTTTTTTTGGTTTTTTTTTTTCCCCGGTTTCCTCTTTTAAG
GTACATACATTTAGCAATGTACATACCATAAATGCAAGCCCCTCTAATTC
GGAGGGGGGGGGGGAAATAGTTTGTTCGTCTGACTTTGGTGATACTCCAC
TAGTACTTGTACTTCTACTGCTGCTACTACTACTACTACTACTACTACTA
CTACTGCCAATTATAGTTATCTATAATCCACGCAGTCTTAATATACGTCA
CAGTACTCAAATGTATATATGTTTGCATATACGCATGTATGCATGTATGT
ATGTATGTCACTACTGCAGGATGCGTCTGTGACGGCCGCTGCAATCTCCG
GCACCCCTCCGCTGCGGAGCTCGCTGTTCCTCCGCCGACCCCGCCATCAG
CAATGAGGAGGCCAAGATCGCACTACTACACCCACGCTCAATCGCCGGCG
GCCGTGGCAGCGTCGCCGTCGTCGACCTCGACGACGCCCCCGCCGTGCAA
GTTTCATGCCCAGGGGAGGTGTATCAAAGGCGACGCCTGTCCCTTTTTTC
ATGTCCCGCGATCGGCGCTGGACAGCGCCACGACGCTTAGGGCGGCGGCG
CTCACTGCGCGATCTGCTGATGCTAGTCCCGCCGCGGTGAATGGGGACAG
TGGGCAGAAGAGAATTGTGAGCGGTGGCCGCGGTGGTGGTGGGCAGAGGG
ACGGGCGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig14292:4828..5736-

>mRNA_H-paniculata_contig14292.2598.1 ID=mRNA_H-paniculata_contig14292.2598.1|Name=mRNA_H-paniculata_contig14292.2598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at H-paniculata_contig14292:4828..5736- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCTTCACTGCGGTTTTCGCCACAGTGAGGCTGCCAGCAACACCCAGCG
AATATGCAATAGATGGGCAGCAGGGGCTTCACTGCGGTTTTCGCCACAGT
GAGGCTGCCAGCAACACCCAGCGAATATGCAATAGATGGGCAGCAGGATG
CGTCTGTGACGGCCGCTGCAATCTCCGGCACCCCTCCGCTGCGGAGCTCG
CTGTTCCTCCGCCGACCCCGCCATCAGCAATGAGGAGGCCAAGATCGCAC
TACTACACCCACGCTCAATCGCCGGCGGCCGTGGCAGCGTCGCCGTCGTC
GACCTCGACGACGCCCCCGCCGTGCAAGTTTCATGCCCAGGGGAGGTGTA
TCAAAGGCGACGCCTGTCCCTTTTTTCATGTCCCGCGATCGGCGCTGGAC
AGCGCCACGACGCTTAGGGCGGCGGCGCTCACTGCGCGATCTGCTGATGC
TAGTCCCGCCGCGGTGAATGGGGACAGTGGGCAGAAGAGAATTGTGAGCG
GTGGCCGCGGTGGTGGTGGGCAGAGGGACGGGCGTGATGCGTCTGTGACG
GCCGCTGCAATCTCCGGCACCCCTCCGCTGCGGAGCTCGCTGTTCCTCCG
CCGACCCCGCCATCAGCAATGAGGAGGCCAAGATCGCACTACTACACCCA
CGCTCAATCGCCGGCGGCCGTGGCAGCGTCGCCGTCGTCGACCTCGACGA
CGCCCCCGCCGTGCAAGTTTCATGCCCAGGGGAGGTGTATCAAAGGCGAC
GCCTGTCCCTTTTTTCATGTCCCGCGATCGGCGCTGGACAGCGCCACGAC
GCTTAGGGCGGCGGCGCTCACTGCGCGATCTGCTGATGCTAGTCCCGCCG
CGGTGAATGGGGACAGTGGGCAGAAGAGAATTGTGAGCGGTGGCCGCGGT
GGTGGTGGGCAGAGGGACGGGCGT
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